Clone Sequence Records
BO08904.3prime Sequence
897 bp (814 high quality bases) assembled on 2006-01-10
> BO08904.3prime
ATGGTCTAGAAAGCTTGCATGACATCCGCACTCCTTGGCCACTGCCTTTT
GGTATTTGGTCAGGTCGATGATGTCCTCATTGAGATACCGCAGAATAGTG
ATGGCACCCAAAACTGTGGGCACACAGCAGGGCTTGGGCAGATGCGGCTG
CTTCAGGTGCATCAGGGTTTGGACGATGGCGTGGTTGGTGGCATTCATTT
TGGTGCCCAGCGGGAAGTTGCAACCGCCGCCGCAGAAATAGGCCTCGAAC
TTTTTGGGCGCTATCACCCAGTTGTGCATGTGCAGCTCCTTGAAATCCAC
AGTGAAGTTAAGGCGCTCGCAGGACTGCGGTGGTCTGTACAGATCCACGG
GCGGCGGCGGAGGAGGTGGTGGCGAACCACCACCGGCCCTTCGCTTCTCG
AGATCTCTCTTGAAACGAAGTTTCTGTATTTTGACCAGCAGCTCGGGGCC
GTTGAAATAGCCGACAATAAAGGGCTCTAAACTGGTGCGGCTGGCCTGTG
GTGTCACCAATCCAGCTGCAAAGGTGCTCAGCTGGGAATCGCCAATTGAT
ATCCTTAGCTCATTTCGACGTTGCAGTCCCTTATTGTGTAACCAATACCG
CAGCGTATCTGTCAAATTGAATTCCAGCCAGCCACGTTGGCTGCTCGTAG
TATTCACAGAGCCCAGGATGCGATAGGAAAAGTCCTGGCGATTGTCCAGT
TTTCGGTACACGGACACGGTAAAGTTCGCCCTTCTGTCCACCAGACTTGG
TTGCTTGTATATCCTGAGCATGGCCTGAACCAAACTCAAATCCACTGGCA
CATCGTTGGTGTTGAAGGTAATGTGCATATCAAGCTCGTTGTCCAGTTGC
TCGGGTTTCAAGCGGCTCGAAAAGGTAAGGATGCTGTTGCAACTGGC
BO08904.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31695-PA | 1203 | scw-RA | 322..1200 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scw-RB | 1590 | CG31695-RB | 368..1246 | 897..19 | 4395 | 100 | Minus |
| scw-RA | 1342 | CG31695-RA | 368..1246 | 897..19 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19699723..19700601 | 19..897 | 4395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:45:03 has no hits.
BO08904.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:31 Download gff for
BO08904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-PA | 322..1203 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:53 Download gff for
BO08904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31695-PA | 322..1203 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:49 Download gff for
BO08904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 368..1253 | 10..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:45 Download gff for
BO08904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 368..1253 | 10..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:45 Download gff for
BO08904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19699716..19700601 | 10..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:49 Download gff for
BO08904.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19699716..19700601 | 10..897 | 99 | | Plus |
BO08904.5prime Sequence
872 bp (755 high quality bases) assembled on 2006-01-10
> BO08904.5prime
GAAGTTATCAGTCGACATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTT
ATGCTGCAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATG
CCCATATACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATAT
CCTGGATTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACA
ATTCAGCATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGAC
CAAGAGCCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGA
TGACATCCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACA
GCATCCTTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAG
CTTGATATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAG
TTTGGTTCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACA
GAAGGGCGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAG
GACTTTTCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACG
TGGCTGGCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACA
ATAAGGGACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCC
CAGCTGAGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCAC
CAGTTTAGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGG
TCAAAATACAGAAACTTCGTTTCAAGAGAGATCTCGAGAAGCGAAGGGCC
GGTGGTGGTTCGCCACCACCTC
BO08904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31695-PA | 1203 | scw-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scw-RB | 1590 | CG31695-RB | 47..902 | 17..872 | 4280 | 100 | Plus |
| scw-RA | 1342 | CG31695-RA | 47..902 | 17..872 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19700067..19700922 | 872..17 | 4280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:53:44 has no hits.
BO08904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:32 Download gff for
BO08904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:54 Download gff for
BO08904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31695-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:58 Download gff for
BO08904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 41..902 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:46:31 Download gff for
BO08904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 41..902 | 9..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:46:31 Download gff for
BO08904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19700067..19700928 | 9..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:58 Download gff for
BO08904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19700067..19700928 | 9..872 | 99 | | Minus |
BO08904.complete Sequence
1234 bp (1234 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631310
> BO08904.complete
GAAGTTATCAGTCGACATGTTGAATGTGTTTTTTTTAACCAGCCTCTTTT
ATGCTGCAAGTGCCACCACATATGTGACCACCAATAATCACATCGAGATG
CCCATATACCAGAAGCGTCCTTTGAGCGAGCAAATGGAGATGATTGATAT
CCTGGATTTGGGTGACCGTCCGAGACGACAGGCGGAGCCCAATCTCCACA
ATTCAGCATCGAAATTCCTTCTCGAAGTTTACAACGAGATTAGCGAGGAC
CAAGAGCCCAAAGAGGTCCTGCATCAGCGCCACAAACGCTCGCTGGACGA
TGACATCCTGATTTCCAACGAGGATCGACAGGAGATTGCCAGTTGCAACA
GCATCCTTACCTTTTCGAGCCGCTTGAAACCCGAGCAACTGGACAACGAG
CTTGATATGCACATTACCTTCAACACCAACGATGTGCCAGTGGATTTGAG
TTTGGTTCAGGCCATGCTCAGGATATACAAGCAACCAAGTCTGGTGGACA
GAAGGGCGAACTTTACCGTGTCCGTGTACCGAAAACTGGACAATCGCCAG
GACTTTTCCTATCGCATCCTGGGCTCTGTGAATACTACGAGCAGCCAACG
TGGCTGGCTGGAATTCAATTTGACAGATACGCTGCGGTATTGGTTACACA
ATAAGGGACTGCAACGTCGAAATGAGCTAAGGATATCAATTGGCGATTCC
CAGCTGAGCACCTTTGCAGCTGGATTGGTGACACCACAGGCCAGCCGCAC
CAGTTTAGAGCCCTTTATTGTCGGCTATTTCAACGGCCCCGAGCTGCTGG
TCAAAATACAGAAACTTCGTTTCAAGAGAGATCTCGAGAAGCGAAGGGCC
GGTGGTGGTTCGCCACCACCTCCTCCGCCGCCGCCCGTGGATCTGTACAG
ACCACCGCAGTCCTGCGAGCGCCTTAACTTCACTGTGGATTTCAAGGAGC
TGCACATGCACAACTGGGTGATAGCGCCCAAAAAGTTCGAGGCCTATTTC
TGCGGCGGCGGTTGCAACTTCCCGCTGGGCACCAAAATGAATGCCACCAA
CCACGCCATCGTCCAAACCCTGATGCACCTGAAGCAGCCGCATCTGCCCA
AGCCCTGCTGTGTGCCCACAGTTTTGGGTGCCATCACTATTCTGCGGTAT
CTCAATGAGGACATCATCGACCTGACCAAATACCAAAAGGCAGTGGCCAA
GGAGTGCGGATGTCATGCAAGCTTTCTAGACCAT
BO08904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scw-RB | 1203 | CG31695-PB | 1..1200 | 17..1216 | 6000 | 100 | Plus |
| scw-RA | 1203 | CG31695-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scw-RB | 1590 | CG31695-RB | 47..1246 | 17..1216 | 6000 | 100 | Plus |
| scw-RA | 1342 | CG31695-RA | 47..1246 | 17..1216 | 6000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19699723..19700922 | 1216..17 | 6000 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:38:46 has no hits.
BO08904.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:35 Download gff for
BO08904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 1..1203 | 17..1217 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:46 Download gff for
BO08904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 108..1320 | 9..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:53 Download gff for
BO08904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 52..1246 | 22..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:35 Download gff for
BO08904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 108..1320 | 9..1225 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:25 Download gff for
BO08904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scw-RA | 52..1246 | 22..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:25 Download gff for
BO08904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19699721..19700917 | 22..1218 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:53 Download gff for
BO08904.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19699721..19700917 | 22..1218 | 99 | | Minus |
BO08904.pep Sequence
Translation from 16 to 1234
> BO08904.pep
MLNVFFLTSLFYAASATTYVTTNNHIEMPIYQKRPLSEQMEMIDILDLGD
RPRRQAEPNLHNSASKFLLEVYNEISEDQEPKEVLHQRHKRSLDDDILIS
NEDRQEIASCNSILTFSSRLKPEQLDNELDMHITFNTNDVPVDLSLVQAM
LRIYKQPSLVDRRANFTVSVYRKLDNRQDFSYRILGSVNTTSSQRGWLEF
NLTDTLRYWLHNKGLQRRNELRISIGDSQLSTFAAGLVTPQASRTSLEPF
IVGYFNGPELLVKIQKLRFKRDLEKRRAGGGSPPPPPPPPVDLYRPPQSC
ERLNFTVDFKELHMHNWVIAPKKFEAYFCGGGCNFPLGTKMNATNHAIVQ
TLMHLKQPHLPKPCCVPTVLGAITILRYLNEDIIDLTKYQKAVAKECGCH
ASFLDH
BO08904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scw-PB | 400 | CG31695-PB | 1..400 | 1..400 | 2113 | 100 | Plus |
| scw-PA | 400 | CG31695-PA | 1..400 | 1..400 | 2113 | 100 | Plus |
| gbb-PB | 455 | CG5562-PB | 62..455 | 36..400 | 532 | 33.6 | Plus |
| gbb-PA | 455 | CG5562-PA | 62..455 | 36..400 | 532 | 33.6 | Plus |
| dpp-PA | 588 | CG9885-PA | 451..587 | 266..399 | 244 | 36.5 | Plus |
