Clone BO08906 Report

Search the DGRC for BO08906

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCdk4-RA
Protein status:BO08906.pep: validated full length
Sequenced Size:985

Clone Sequence Records

BO08906.3prime Sequence

896 bp (868 high quality bases) assembled on 2006-01-10

> BO08906.3prime
ATGGTCTAGAAAGCTTGCTAGGGGTTCCTGCTGAAAGTAATCGTGCTCCA
AACAGGCCAAGGCGGATGGTCGCAGGTGGAGGTCGTAGGAAAGCATTTTA
TTCAACAGATCATCGGCGTACTTGCACAGGTGTGGGCAAAAGTCTTTTGG
TCTCTTTGGATGCCGCTGGGGAAAGTGTTCCAGGGCCACGGAAATGGTCT
GTGGCCACTGTTGCTCGGTGGGTCTACCGGTCAGTTCGAAGATGCGGTCC
AGCTGATTCTTTTCGGAGGTGCCCGGGAATAGGGCGCGCCGATTGAACAT
CTCGAAGATGATGCAGGCGGCACTCCAGATGTCCACGGTGCTGTTGTAGG
GCTGGGCGAGCAGAACCTCGGGTGCGCGGTACCACAAGGTGACCACCACG
GAGGTGAGCTTCATCTCCGAACCGTAGGTCTTGGCCAAGCCAAAGTCGGC
GATCTTGAGGTGGCCCTGCGAGGAGACCAGCAGGTTTTGCGGCTTAAGAT
CCCGATGGATGATACGGTGTGAGTGTAAGAAGTCCACACCGGTCAGTAGT
TCCCTTGACAAGCGCTGAATTGTGGGCGGCGACATGCCCGATTTGGGAAG
TCTGTCTATAAGATCCGAAAGATCCTGCTCCACATGTTCGAAAACCAACA
GAATCAGCAATTGGCCGTCGCGCTCCAGAAACTGGCATACTTCGTACAGT
TTGACAATATTCGCATGATTGCTGGCATTCAGCTGCTTCAGCAGCGAAAT
CTCCCGCAGCGTGGACATTGGCACACCGTTCTCGTTCAGCGATATCCTAA
CCTTCTTCAGCGCCACTATGTTGCCGGTGATCACATCGCGGGCTCTGTAA
ACCGTTCCATAGGCACCTTCGCCGATGATGTTGAGCTCCTGGTAGT

BO08906.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5072-PC 954 Cdk4-RC 74..951 896..19 4390 100 Minus
CG5072-PA 954 Cdk4-RA 74..951 896..19 4390 100 Minus
CG5072-PB 954 Cdk4-RB 74..951 896..19 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 1600 CG5072-RE 307..1184 896..19 4390 100 Minus
Cdk4-RD 1447 CG5072-RD 154..1031 896..19 4390 100 Minus
Cdk4-RB 2026 CG5072-RB 733..1610 896..19 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16584347..16584678 567..236 1660 100 Minus
2R 25286936 2R 16582869..16583036 868..701 840 100 Minus
2R 25286936 2R 16584148..16584287 704..565 685 99.3 Minus
2R 25286936 2R 16584744..16584879 235..100 680 100 Minus
2R 25286936 2R 16584952..16585032 99..19 405 100 Minus
Blast to na_te.dros performed on 2015-02-08 14:34:20 has no hits.

BO08906.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:33 Download gff for BO08906.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-PA 74..954 18..896 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:56 Download gff for BO08906.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5072-PB 74..954 18..896 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:57:18 Download gff for BO08906.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RA 508..1385 19..896 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:34 Download gff for BO08906.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 733..1610 19..896 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:34 Download gff for BO08906.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16580986..16581015 867..896 100 -> Minus
2R 16582871..16583036 701..866 100 -> Minus
2R 16584152..16584287 565..700 100 -> Minus
2R 16584350..16584678 236..564 100 -> Minus
2R 16584744..16584879 100..235 100 -> Minus
2R 16584952..16585032 19..99 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:57:18 Download gff for BO08906.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12468491..12468520 867..896 100 -> Minus
arm_2R 12470376..12470541 701..866 100 -> Minus
arm_2R 12471657..12471792 565..700 100 -> Minus
arm_2R 12471855..12472183 236..564 100 -> Minus
arm_2R 12472249..12472384 100..235 100 -> Minus
arm_2R 12472457..12472537 19..99 100   Minus

BO08906.5prime Sequence

975 bp (832 high quality bases) assembled on 2006-01-10

> BO08906.5prime
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
CCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACCAAAAGACTTTTGC
CCACACCTGTGCAAGTACGCCGATGATCTGTTGAATAAATGCTTTCCTAC
GACCTCCACCTGCGACCATCCGCCTTGGCCTGTTTGGAGCACGATTACTT
TCAGCAGGAACCCCTAGCAAGCTTT

BO08906.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5072-PC 954 Cdk4-RC 1..873 17..889 4365 100 Plus
CG5072-PA 954 Cdk4-RA 1..873 17..889 4365 100 Plus
CG5072-PB 954 Cdk4-RB 1..873 17..889 4365 100 Plus
CG5072-PC 954 Cdk4-RC 872..951 887..966 400 100 Plus
CG5072-PA 954 Cdk4-RA 872..951 887..966 400 100 Plus
CG5072-PB 954 Cdk4-RB 872..951 887..966 400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 1600 CG5072-RE 234..1184 17..966 4730 99.9 Plus
Cdk4-RD 1447 CG5072-RD 81..1031 17..966 4730 99.9 Plus
Cdk4-RB 2026 CG5072-RB 660..1610 17..966 4730 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16584347..16584678 419..750 1660 100 Plus
2R 25286936 2R 16582869..16583036 118..285 840 100 Plus
2R 25286936 2R 16584148..16584287 282..421 685 99.3 Plus
2R 25286936 2R 16584744..16584879 751..886 680 100 Plus
2R 25286936 2R 16580913..16581018 17..122 530 100 Plus
2R 25286936 2R 16584953..16585032 887..966 400 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:57:22 has no hits.

BO08906.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:34 Download gff for BO08906.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-PA 1..954 17..967 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:57 Download gff for BO08906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5072-PB 1..954 17..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:52 Download gff for BO08906.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RA 428..1385 9..966 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:35:22 Download gff for BO08906.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 653..1610 9..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:35:22 Download gff for BO08906.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16582871..16583036 120..285 100 -> Plus
2R 16584152..16584287 286..421 100 -> Plus
2R 16580906..16581015 9..119 97 -> Plus
2R 16584952..16585032 887..966 98   Plus
2R 16584350..16584678 422..750 100 -> Plus
2R 16584744..16584879 751..886 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:52 Download gff for BO08906.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12468411..12468520 9..119 97 -> Plus
arm_2R 12470376..12470541 120..285 100 -> Plus
arm_2R 12471657..12471792 286..421 100 -> Plus
arm_2R 12471855..12472183 422..750 100 -> Plus
arm_2R 12472249..12472384 751..886 100 -> Plus
arm_2R 12472457..12472537 887..966 98   Plus

BO08906.complete Sequence

985 bp (985 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631311

> BO08906.complete
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
CCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACCAAAAGACTTTTGC
CCACACCTGTGCAAGTACGCCGATGATCTGTTGAATAAAATGCTTTCCTA
CGACCTCCACCTGCGACCATCCGCCTTGGCCTGTTTGGAGCACGATTACT
TTCAGCAGGAACCCCTAGCAAGCTTTCTAGACCAT

BO08906.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 954 CG5072-PE 1..951 17..967 4755 100 Plus
Cdk4-RD 954 CG5072-PD 1..951 17..967 4755 100 Plus
Cdk4-RB 954 CG5072-PB 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-RE 1600 CG5072-RE 234..1184 17..967 4755 100 Plus
Cdk4-RD 1447 CG5072-RD 81..1031 17..967 4755 100 Plus
Cdk4-RB 2026 CG5072-RB 660..1610 17..967 4755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16584347..16584678 419..750 1660 100 Plus
2R 25286936 2R 16582869..16583036 118..285 840 100 Plus
2R 25286936 2R 16584148..16584287 282..421 685 99.3 Plus
2R 25286936 2R 16584744..16584879 751..886 680 100 Plus
2R 25286936 2R 16580913..16581018 17..122 530 100 Plus
2R 25286936 2R 16584952..16585032 887..967 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:29:25 has no hits.

BO08906.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:36 Download gff for BO08906.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 1..954 17..968 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:27 Download gff for BO08906.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 635..1592 9..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:22 Download gff for BO08906.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RA 435..1385 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:36 Download gff for BO08906.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 635..1592 9..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:21 Download gff for BO08906.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk4-RB 660..1610 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:21 Download gff for BO08906.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16580913..16581015 17..119 100 -> Plus
2R 16582871..16583036 120..285 100 -> Plus
2R 16584152..16584287 286..421 100 -> Plus
2R 16584350..16584678 422..750 100 -> Plus
2R 16584744..16584879 751..886 100 -> Plus
2R 16584952..16585032 887..969 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:22 Download gff for BO08906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12468418..12468520 17..119 100 -> Plus
arm_2R 12470376..12470541 120..285 100 -> Plus
arm_2R 12471657..12471792 286..421 100 -> Plus
arm_2R 12471855..12472183 422..750 100 -> Plus
arm_2R 12472249..12472384 751..886 100 -> Plus
arm_2R 12472457..12472537 887..969 97   Plus

BO08906.pep Sequence

Translation from 16 to 985

> BO08906.pep
MSYVRQLKRQKMSQAKKFGDGDPFNYQELNIIGEGAYGTVYRARDVITGN
IVALKKVRISLNENGVPMSTLREISLLKQLNASNHANIVKLYEVCQFLER
DGQLLILLVFEHVEQDLSDLIDRLPKSGMSPPTIQRLSRELLTGVDFLHS
HRIIHRDLKPQNLLVSSQGHLKIADFGLAKTYGSEMKLTSVVVTLWYRAP
EVLLAQPYNSTVDIWSAACIIFEMFNRRALFPGTSEKNQLDRIFELTGRP
TEQQWPQTISVALEHFPQRHPKRPKDFCPHLCKYADDLLNKMLSYDLHLR
PSALACLEHDYFQQEPLASFLDH

BO08906.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk4-PE 317 CG5072-PE 1..317 1..317 1653 100 Plus
Cdk4-PD 317 CG5072-PD 1..317 1..317 1653 100 Plus
Cdk4-PB 317 CG5072-PB 1..317 1..317 1653 100 Plus
Cdk4-PA 317 CG5072-PA 1..317 1..317 1653 100 Plus
Cdk4-PC 317 CG5072-PC 1..317 1..317 1653 100 Plus