Clone Sequence Records
BO08906.3prime Sequence
896 bp (868 high quality bases) assembled on 2006-01-10
> BO08906.3prime
ATGGTCTAGAAAGCTTGCTAGGGGTTCCTGCTGAAAGTAATCGTGCTCCA
AACAGGCCAAGGCGGATGGTCGCAGGTGGAGGTCGTAGGAAAGCATTTTA
TTCAACAGATCATCGGCGTACTTGCACAGGTGTGGGCAAAAGTCTTTTGG
TCTCTTTGGATGCCGCTGGGGAAAGTGTTCCAGGGCCACGGAAATGGTCT
GTGGCCACTGTTGCTCGGTGGGTCTACCGGTCAGTTCGAAGATGCGGTCC
AGCTGATTCTTTTCGGAGGTGCCCGGGAATAGGGCGCGCCGATTGAACAT
CTCGAAGATGATGCAGGCGGCACTCCAGATGTCCACGGTGCTGTTGTAGG
GCTGGGCGAGCAGAACCTCGGGTGCGCGGTACCACAAGGTGACCACCACG
GAGGTGAGCTTCATCTCCGAACCGTAGGTCTTGGCCAAGCCAAAGTCGGC
GATCTTGAGGTGGCCCTGCGAGGAGACCAGCAGGTTTTGCGGCTTAAGAT
CCCGATGGATGATACGGTGTGAGTGTAAGAAGTCCACACCGGTCAGTAGT
TCCCTTGACAAGCGCTGAATTGTGGGCGGCGACATGCCCGATTTGGGAAG
TCTGTCTATAAGATCCGAAAGATCCTGCTCCACATGTTCGAAAACCAACA
GAATCAGCAATTGGCCGTCGCGCTCCAGAAACTGGCATACTTCGTACAGT
TTGACAATATTCGCATGATTGCTGGCATTCAGCTGCTTCAGCAGCGAAAT
CTCCCGCAGCGTGGACATTGGCACACCGTTCTCGTTCAGCGATATCCTAA
CCTTCTTCAGCGCCACTATGTTGCCGGTGATCACATCGCGGGCTCTGTAA
ACCGTTCCATAGGCACCTTCGCCGATGATGTTGAGCTCCTGGTAGT
BO08906.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5072-PC | 954 | Cdk4-RC | 74..951 | 896..19 | 4390 | 100 | Minus |
CG5072-PA | 954 | Cdk4-RA | 74..951 | 896..19 | 4390 | 100 | Minus |
CG5072-PB | 954 | Cdk4-RB | 74..951 | 896..19 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 1600 | CG5072-RE | 307..1184 | 896..19 | 4390 | 100 | Minus |
Cdk4-RD | 1447 | CG5072-RD | 154..1031 | 896..19 | 4390 | 100 | Minus |
Cdk4-RB | 2026 | CG5072-RB | 733..1610 | 896..19 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:34:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16584347..16584678 | 567..236 | 1660 | 100 | Minus |
2R | 25286936 | 2R | 16582869..16583036 | 868..701 | 840 | 100 | Minus |
2R | 25286936 | 2R | 16584148..16584287 | 704..565 | 685 | 99.3 | Minus |
2R | 25286936 | 2R | 16584744..16584879 | 235..100 | 680 | 100 | Minus |
2R | 25286936 | 2R | 16584952..16585032 | 99..19 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:34:20 has no hits.
BO08906.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:33 Download gff for
BO08906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-PA | 74..954 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:56 Download gff for
BO08906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5072-PB | 74..954 | 18..896 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:57:18 Download gff for
BO08906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RA | 508..1385 | 19..896 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:34 Download gff for
BO08906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 733..1610 | 19..896 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:34 Download gff for
BO08906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16580986..16581015 | 867..896 | 100 | -> | Minus |
2R | 16582871..16583036 | 701..866 | 100 | -> | Minus |
2R | 16584152..16584287 | 565..700 | 100 | -> | Minus |
2R | 16584350..16584678 | 236..564 | 100 | -> | Minus |
2R | 16584744..16584879 | 100..235 | 100 | -> | Minus |
2R | 16584952..16585032 | 19..99 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:57:18 Download gff for
BO08906.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12468491..12468520 | 867..896 | 100 | -> | Minus |
arm_2R | 12470376..12470541 | 701..866 | 100 | -> | Minus |
arm_2R | 12471657..12471792 | 565..700 | 100 | -> | Minus |
arm_2R | 12471855..12472183 | 236..564 | 100 | -> | Minus |
arm_2R | 12472249..12472384 | 100..235 | 100 | -> | Minus |
arm_2R | 12472457..12472537 | 19..99 | 100 | | Minus |
BO08906.5prime Sequence
975 bp (832 high quality bases) assembled on 2006-01-10
> BO08906.5prime
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
CCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACCAAAAGACTTTTGC
CCACACCTGTGCAAGTACGCCGATGATCTGTTGAATAAATGCTTTCCTAC
GACCTCCACCTGCGACCATCCGCCTTGGCCTGTTTGGAGCACGATTACTT
TCAGCAGGAACCCCTAGCAAGCTTT
BO08906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5072-PC | 954 | Cdk4-RC | 1..873 | 17..889 | 4365 | 100 | Plus |
CG5072-PA | 954 | Cdk4-RA | 1..873 | 17..889 | 4365 | 100 | Plus |
CG5072-PB | 954 | Cdk4-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
CG5072-PC | 954 | Cdk4-RC | 872..951 | 887..966 | 400 | 100 | Plus |
CG5072-PA | 954 | Cdk4-RA | 872..951 | 887..966 | 400 | 100 | Plus |
CG5072-PB | 954 | Cdk4-RB | 872..951 | 887..966 | 400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 1600 | CG5072-RE | 234..1184 | 17..966 | 4730 | 99.9 | Plus |
Cdk4-RD | 1447 | CG5072-RD | 81..1031 | 17..966 | 4730 | 99.9 | Plus |
Cdk4-RB | 2026 | CG5072-RB | 660..1610 | 17..966 | 4730 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16584347..16584678 | 419..750 | 1660 | 100 | Plus |
2R | 25286936 | 2R | 16582869..16583036 | 118..285 | 840 | 100 | Plus |
2R | 25286936 | 2R | 16584148..16584287 | 282..421 | 685 | 99.3 | Plus |
2R | 25286936 | 2R | 16584744..16584879 | 751..886 | 680 | 100 | Plus |
2R | 25286936 | 2R | 16580913..16581018 | 17..122 | 530 | 100 | Plus |
2R | 25286936 | 2R | 16584953..16585032 | 887..966 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:57:22 has no hits.
BO08906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:34 Download gff for
BO08906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-PA | 1..954 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:54:57 Download gff for
BO08906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5072-PB | 1..954 | 17..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:25:52 Download gff for
BO08906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RA | 428..1385 | 9..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:35:22 Download gff for
BO08906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 653..1610 | 9..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:35:22 Download gff for
BO08906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16582871..16583036 | 120..285 | 100 | -> | Plus |
2R | 16584152..16584287 | 286..421 | 100 | -> | Plus |
2R | 16580906..16581015 | 9..119 | 97 | -> | Plus |
2R | 16584952..16585032 | 887..966 | 98 | | Plus |
2R | 16584350..16584678 | 422..750 | 100 | -> | Plus |
2R | 16584744..16584879 | 751..886 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:25:52 Download gff for
BO08906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12468411..12468520 | 9..119 | 97 | -> | Plus |
arm_2R | 12470376..12470541 | 120..285 | 100 | -> | Plus |
arm_2R | 12471657..12471792 | 286..421 | 100 | -> | Plus |
arm_2R | 12471855..12472183 | 422..750 | 100 | -> | Plus |
arm_2R | 12472249..12472384 | 751..886 | 100 | -> | Plus |
arm_2R | 12472457..12472537 | 887..966 | 98 | | Plus |
BO08906.complete Sequence
985 bp (985 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631311
> BO08906.complete
GAAGTTATCAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAA
TGTCCCAGGCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAG
CTCAACATCATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGA
TGTGATCACCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGA
ACGAGAACGGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAG
CAGCTGAATGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATG
CCAGTTTCTGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAAC
ATGTGGAGCAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGC
ATGTCGCCGCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGT
GGACTTCTTACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAA
ACCTGCTGGTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTG
GCCAAGACCTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTT
GTGGTACCGCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCG
TGGACATCTGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGC
GCCCTATTCCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGA
ACTGACCGGTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGG
CCCTGGAACACTTTCCCCAGCGGCATCCAAAGAGACCAAAAGACTTTTGC
CCACACCTGTGCAAGTACGCCGATGATCTGTTGAATAAAATGCTTTCCTA
CGACCTCCACCTGCGACCATCCGCCTTGGCCTGTTTGGAGCACGATTACT
TTCAGCAGGAACCCCTAGCAAGCTTTCTAGACCAT
BO08906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 954 | CG5072-PE | 1..951 | 17..967 | 4755 | 100 | Plus |
Cdk4-RD | 954 | CG5072-PD | 1..951 | 17..967 | 4755 | 100 | Plus |
Cdk4-RB | 954 | CG5072-PB | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-RE | 1600 | CG5072-RE | 234..1184 | 17..967 | 4755 | 100 | Plus |
Cdk4-RD | 1447 | CG5072-RD | 81..1031 | 17..967 | 4755 | 100 | Plus |
Cdk4-RB | 2026 | CG5072-RB | 660..1610 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16584347..16584678 | 419..750 | 1660 | 100 | Plus |
2R | 25286936 | 2R | 16582869..16583036 | 118..285 | 840 | 100 | Plus |
2R | 25286936 | 2R | 16584148..16584287 | 282..421 | 685 | 99.3 | Plus |
2R | 25286936 | 2R | 16584744..16584879 | 751..886 | 680 | 100 | Plus |
2R | 25286936 | 2R | 16580913..16581018 | 17..122 | 530 | 100 | Plus |
2R | 25286936 | 2R | 16584952..16585032 | 887..967 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:29:25 has no hits.
BO08906.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:36 Download gff for
BO08906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 1..954 | 17..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:27 Download gff for
BO08906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 635..1592 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:22 Download gff for
BO08906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RA | 435..1385 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:36 Download gff for
BO08906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 635..1592 | 9..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:21 Download gff for
BO08906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk4-RB | 660..1610 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:21 Download gff for
BO08906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16580913..16581015 | 17..119 | 100 | -> | Plus |
2R | 16582871..16583036 | 120..285 | 100 | -> | Plus |
2R | 16584152..16584287 | 286..421 | 100 | -> | Plus |
2R | 16584350..16584678 | 422..750 | 100 | -> | Plus |
2R | 16584744..16584879 | 751..886 | 100 | -> | Plus |
2R | 16584952..16585032 | 887..969 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:22 Download gff for
BO08906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12468418..12468520 | 17..119 | 100 | -> | Plus |
arm_2R | 12470376..12470541 | 120..285 | 100 | -> | Plus |
arm_2R | 12471657..12471792 | 286..421 | 100 | -> | Plus |
arm_2R | 12471855..12472183 | 422..750 | 100 | -> | Plus |
arm_2R | 12472249..12472384 | 751..886 | 100 | -> | Plus |
arm_2R | 12472457..12472537 | 887..969 | 97 | | Plus |
BO08906.pep Sequence
Translation from 16 to 985
> BO08906.pep
MSYVRQLKRQKMSQAKKFGDGDPFNYQELNIIGEGAYGTVYRARDVITGN
IVALKKVRISLNENGVPMSTLREISLLKQLNASNHANIVKLYEVCQFLER
DGQLLILLVFEHVEQDLSDLIDRLPKSGMSPPTIQRLSRELLTGVDFLHS
HRIIHRDLKPQNLLVSSQGHLKIADFGLAKTYGSEMKLTSVVVTLWYRAP
EVLLAQPYNSTVDIWSAACIIFEMFNRRALFPGTSEKNQLDRIFELTGRP
TEQQWPQTISVALEHFPQRHPKRPKDFCPHLCKYADDLLNKMLSYDLHLR
PSALACLEHDYFQQEPLASFLDH
BO08906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk4-PE | 317 | CG5072-PE | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PD | 317 | CG5072-PD | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PB | 317 | CG5072-PB | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PA | 317 | CG5072-PA | 1..317 | 1..317 | 1653 | 100 | Plus |
Cdk4-PC | 317 | CG5072-PC | 1..317 | 1..317 | 1653 | 100 | Plus |