Clone Sequence Records
BO08909.3prime Sequence
881 bp (838 high quality bases) assembled on 2006-01-10
> BO08909.3prime
ATGGTCTAGAAAGCTTGCATTGGTGCGTAGCTGATAGTCGCCGTTCTGCG
TGATGTACCGCACCCATGGCAGCGCCTGATAGCCGCTCTTCTCGATGATC
TTCAGATAGCGCACCTGGATGCCCGACGTGGTAAAGTAGGGAATCTCGAA
GCGCACCTGAATTGGCGGCTTGCCCTCCGTATTGTCCTCGCTTTCCACGC
TCGGCAGACCGAAATGTGCCCGCATTAGATACTCCTTGCCACCCGGGAAC
GATTTGATCGTCCAGATGATTGCGTTCTGCTCCGGTGCGTACTTGCAGCT
TCCAATGGTGGTCTTGAACTTGGGTGAGTCCGCGTCGGCGGGCACTGGTA
TGACGATTTCCACGTTGTTGGCCGTCGATCTTCGCTTGAACTGAGACTTC
GCCTTAATCATGTACTCCACACGGGAGTGGGCATGCCGCTCGATCACTGA
TTCGATCCAAATCAGGGGTTTGACATGCGTGTTCAGACGATAGGACATCA
GTTCGAACTCGCCGTCCGGAGGAATGAACGAGATTGTCCGGTCATTCTCG
AAGCGTGACAACCGCACGCACTGGTGGAACTTGACGTCCTCCAGCTCTAC
GGACTTTGACTTGCCGCGGCCCGTGCTCTCGAACAGAACCTTGTCGTTGA
GACCCAGTCGCAGCTCTGGCATTCCCGACAAGTAGACGCGCATCTTAATG
GCGCCCACGATCTCGCTGCGCAGCACATTGCCATTGGCGTTTGCGAGAAG
ATTCACCGACTCGATAACGTCCAGGAACACCTCGTTCTTGCGATACTTAA
TGCCCTCGGACCGCCAGGATACTGCATTGGTCACGGCCACCGGGATGCGG
GGCTGTAGCTCCAGCTTATGACCCTCCTGCG
BO08909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9388-PA | 1281 | AP-47-RA | 416..1278 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1mu-RA | 1755 | CG9388-RA | 692..1554 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9557913..9558368 | 19..474 | 2280 | 100 | Plus |
| 3R | 32079331 | 3R | 9558426..9558834 | 473..881 | 2045 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:33:22 has no hits.
BO08909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:40 Download gff for
BO08909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-47-PA | 416..1281 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:05 Download gff for
BO08909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9388-PA | 416..1281 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:53:36 Download gff for
BO08909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 692..1560 | 14..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:26 Download gff for
BO08909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 692..1560 | 14..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:26 Download gff for
BO08909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9557907..9558368 | 14..474 | 99 | <- | Plus |
| 3R | 9558428..9558834 | 475..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:53:36 Download gff for
BO08909.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5383629..5384090 | 14..474 | 99 | <- | Plus |
| arm_3R | 5384150..5384556 | 475..881 | 100 | | Plus |
BO08909.5prime Sequence
906 bp (764 high quality bases) assembled on 2006-01-10
> BO08909.5prime
GAAGTTATCAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGA
AGGGCAAGGTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATG
GCCGTGATCGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGG
CCTAATCACTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCA
AAACGAACAATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTT
AATATCGCTCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGT
GGAATACTTCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGA
TCATCTACGAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACC
ACCGACTCGAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCT
GGAGCTACAGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGC
GGTCCGAGGGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATC
GAGTCGGTGAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGA
GATCGTGGGCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGC
TGCGACTGGGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGC
AAGTCAAAGTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCG
GTTGTCACGCTTCGAGAATGACCGGACAATCTCGTTCATTCCTCCGGACG
GCGAGTTCGAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCTG
ATTTGGATCGAATCAGTGATCGAAGCGCATGCCCACTCCCGTGTGGAGTA
CATGAT
BO08909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9388-PA | 1281 | AP-47-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
| CG9388-PA | 1281 | AP-47-RA | 861..890 | 877..906 | 150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1mu-RA | 1755 | CG9388-RA | 274..1166 | 14..906 | 4420 | 99.8 | Plus |
| AP-2mu-RC | 1976 | CG7057-RC | 461..525 | 344..408 | 235 | 90.8 | Plus |
| AP-2mu-RB | 2025 | CG7057-RB | 461..525 | 344..408 | 235 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9558426..9559252 | 840..14 | 4135 | 100 | Minus |
| 3R | 32079331 | 3R | 9558301..9558368 | 906..839 | 295 | 95.6 | Minus |
| 3R | 32079331 | 3R | 22462983..22463047 | 344..408 | 235 | 90.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:52:59 has no hits.
BO08909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:41 Download gff for
BO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-47-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:06 Download gff for
BO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9388-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:36 Download gff for
BO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 271..1166 | 10..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:07 Download gff for
BO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 271..1166 | 10..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:07 Download gff for
BO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9558301..9558368 | 839..906 | 97 | <- | Minus |
| 3R | 9558428..9559255 | 10..838 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:36 Download gff for
BO08909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5384023..5384090 | 839..906 | 97 | <- | Minus |
| arm_3R | 5384150..5384977 | 10..838 | 99 | | Minus |
BO08909.complete Sequence
1312 bp (1312 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631312
> BO08909.complete
GAAGTTATCAGTCGACATGTCTTCGTCGGCCATTTTCGTTCTGGACGTGA
AGGGCAAGGTGCTGATATCGCGGAACTACCGCGGTGACAACATCGACATG
GCCGTGATCGACAAATTCATGCCATTGCTGATGGAGCGCGAGGAGGAGGG
CCTAATCACTCCGATCCTTCAGACGGCGGAGACTACATTTGCCTACATCA
AAACGAACAATCTTTATATCGTATCCACGACGCCGCGCAATAAGAACGTT
AATATCGCTCTGGTCTTCGTCTTTCTGCACAAGATCGCGCAGGTCTTTGT
GGAATACTTCAAGGAGCTGGAGGAGGAGTCCATTCGGGACAATTTCGTGA
TCATCTACGAGCTGCTGGATGAATTGCTCGACTTTGGCTACCCGCAGACC
ACCGACTCGAAAATTCTACAGGAATACATTACGCAGGAGGGTCATAAGCT
GGAGCTACAGCCCCGCATCCCGGTGGCCGTGACCAATGCAGTATCCTGGC
GGTCCGAGGGCATTAAGTATCGCAAGAACGAGGTGTTCCTGGACGTTATC
GAGTCGGTGAATCTTCTCGCAAACGCCAATGGCAATGTGCTGCGCAGCGA
GATCGTGGGCGCCATTAAGATGCGCGTCTACTTGTCGGGAATGCCAGAGC
TGCGACTGGGTCTCAACGACAAGGTTCTGTTCGAGAGCACGGGCCGCGGC
AAGTCAAAGTCCGTAGAGCTGGAGGACGTCAAGTTCCACCAGTGCGTGCG
GTTGTCACGCTTCGAGAATGACCGGACAATCTCGTTCATTCCTCCGGACG
GCGAGTTCGAACTGATGTCCTATCGTCTGAACACGCATGTCAAACCCCTG
ATTTGGATCGAATCAGTGATCGAGCGGCATGCCCACTCCCGTGTGGAGTA
CATGATTAAGGCGAAGTCTCAGTTCAAGCGAAGATCGACGGCCAACAACG
TGGAAATCGTCATACCAGTGCCCGCCGACGCGGACTCACCCAAGTTCAAG
ACCACCATTGGAAGCTGCAAGTACGCACCGGAGCAGAACGCAATCATCTG
GACGATCAAATCGTTCCCGGGTGGCAAGGAGTATCTAATGCGGGCACATT
TCGGTCTGCCGAGCGTGGAAAGCGAGGACAATACGGAGGGCAAGCCGCCA
ATTCAGGTGCGCTTCGAGATTCCCTACTTTACCACGTCGGGCATCCAGGT
GCGCTATCTGAAGATCATCGAGAAGAGCGGCTATCAGGCGCTGCCATGGG
TGCGGTACATCACGCAGAACGGCGACTATCAGCTACGCACCAATGCAAGC
TTTCTAGACCAT
BO08909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1mu-RA | 1281 | CG9388-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
| AP-2mu-RC | 1314 | CG7057-PC | 313..377 | 344..408 | 235 | 90.8 | Plus |
| AP-2mu-RB | 1314 | CG7057-PB | 313..377 | 344..408 | 235 | 90.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1mu-RA | 1755 | CG9388-RA | 274..1554 | 14..1294 | 6405 | 100 | Plus |
| AP-2mu-RC | 1976 | CG7057-RC | 461..525 | 344..408 | 235 | 90.8 | Plus |
| AP-2mu-RB | 2025 | CG7057-RB | 461..525 | 344..408 | 235 | 90.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9558426..9559252 | 840..14 | 4135 | 100 | Minus |
| 3R | 32079331 | 3R | 9557913..9558368 | 1294..839 | 2280 | 100 | Minus |
| 3R | 32079331 | 3R | 22462983..22463047 | 344..408 | 235 | 90.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:42:40 has no hits.
BO08909.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:37 Download gff for
BO08909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-47-RA | 1..1281 | 17..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:48 Download gff for
BO08909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-47-RA | 269..1558 | 10..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:50 Download gff for
BO08909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 277..1554 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:38 Download gff for
BO08909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-47-RA | 269..1558 | 10..1299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:33 Download gff for
BO08909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1mu-RA | 277..1554 | 17..1296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:33 Download gff for
BO08909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9557910..9558368 | 839..1296 | 99 | <- | Minus |
| 3R | 9558428..9559249 | 17..838 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:50 Download gff for
BO08909.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5383632..5384090 | 839..1296 | 99 | <- | Minus |
| arm_3R | 5384150..5384971 | 17..838 | 100 | | Minus |
BO08909.pep Sequence
Translation from 16 to 1312
> BO08909.pep
MSSSAIFVLDVKGKVLISRNYRGDNIDMAVIDKFMPLLMEREEEGLITPI
LQTAETTFAYIKTNNLYIVSTTPRNKNVNIALVFVFLHKIAQVFVEYFKE
LEEESIRDNFVIIYELLDELLDFGYPQTTDSKILQEYITQEGHKLELQPR
IPVAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLANANGNVLRSEIVGAI
KMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQCVRLSRFE
NDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIERHAHSRVEYMIKAK
SQFKRRSTANNVEIVIPVPADADSPKFKTTIGSCKYAPEQNAIIWTIKSF
PGGKEYLMRAHFGLPSVESEDNTEGKPPIQVRFEIPYFTTSGIQVRYLKI
IEKSGYQALPWVRYITQNGDYQLRTNASFLDH
BO08909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1mu-PA | 426 | CG9388-PA | 1..426 | 1..426 | 2184 | 100 | Plus |
| AP-2mu-PC | 437 | CG7057-PC | 5..436 | 6..424 | 852 | 42.2 | Plus |
| AP-2mu-PB | 437 | CG7057-PB | 5..436 | 6..424 | 852 | 42.2 | Plus |
| AP-2mu-PA | 437 | CG7057-PA | 5..436 | 6..424 | 852 | 42.2 | Plus |
| cm-PB | 415 | CG3035-PB | 4..414 | 5..424 | 450 | 27.4 | Plus |
