Clone Sequence Records
BO08911.3prime Sequence
884 bp (806 high quality bases) assembled on 2006-01-10
> BO08911.3prime
ATGGTCTAGAAAGCTTGCATTGGAGGCAACTGCTTCTTGGGGTTCCGCCG
GCTCTGTCTGCTTCTTGGCCCCATCCCTTTTCACCTTCGCCGTGCTCTTG
TCCCACATCTCTGGAACGTAGACAAAGGGATCGATTTTCAGCTGCTCACT
GCTTGGCGGGCTCTTCAGCAGGACACGTGTAATGAAACGTCCCTCGCGCT
TGGGCCTCATAGTGTTAATATCCTGCAGTAGGAACTTGATGTTCTCCTCA
AGCTTCTGGACATCCATGTCCAAAGTGCCCACACTGGCGGTGATCAGGCC
AAAGTTTTGCTGGTACTCATCCTTGGCTGCACTGTAACTAATGCCGCTGG
AGAATTTGACGATCATCTCGGCCAGGTTGGTGCCCAGCGTCTCGCTCTTT
GGATTTGGGAACTTGCGTTTCATCAGGCCTCGCAGGGCCACCAGCTCGGC
CAGTATATTCGGATGGGCAATGACGTACTGGTAGTCGGAGAGCAGCAGCT
CGCCGCTGGTAATATCCTTAATGAGCTCCACGCCGCCGACTAGCGAGGCG
CCAGCTTCCCTGGCCTCCAGGACTTCATTATTTCCCTTGGTGAAAACTAT
GATCTTCCGCTCCTCGCCGTGGTCAAACTTGTGTGGAATCATGGCCATGC
GCTGGAAGTTATCCACAAAACGTGTGATCTTCTCCGCCTGCATGTTGAGT
TCAATATCCAAATTGAGGGGAGCATTGGGTACGTTGTACATGCTGGGATG
ATGCGTCTCCCGATGGCACTGGATAGCTTCCTGCACCGAGTACACTGGCC
AGCGGTAGTAGCGCCCCACATAGCAGTCATCTTTGGGCACCTGTTTCCAG
AAGTCATCCACATGTTTGTCCGCCCGTTTCACAT
BO08911.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7494-PA | 1065 | mRpL1-RA | 197..1062 | 884..19 | 4305 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1220 | CG7494-RA | 269..1134 | 884..19 | 4315 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8302124..8302684 | 579..19 | 2805 | 100 | Minus |
3R | 32079331 | 3R | 8301762..8302066 | 884..580 | 1510 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:17:24 has no hits.
BO08911.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:44 Download gff for
BO08911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-PA | 197..1065 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:10 Download gff for
BO08911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7494-PA | 197..1065 | 18..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:59 Download gff for
BO08911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 269..1139 | 11..884 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:16 Download gff for
BO08911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 269..1139 | 11..884 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:16 Download gff for
BO08911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8301762..8302066 | 580..884 | 99 | -> | Minus |
3R | 8302124..8302689 | 11..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:59 Download gff for
BO08911.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4127484..4127788 | 580..884 | 99 | -> | Minus |
arm_3R | 4127846..4128411 | 11..579 | 99 | | Minus |
BO08911.5prime Sequence
948 bp (785 high quality bases) assembled on 2006-01-10
> BO08911.5prime
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG
GAGAACATCAAGTTCCTACTGCAGGATATTAACACTATGAGGCCCAAGCG
CGAGGGACGTTTCATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAG
BO08911.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7494-PA | 1065 | mRpL1-RA | 1..932 | 17..948 | 4660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1220 | CG7494-RA | 73..1004 | 17..948 | 4660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8302124..8302554 | 518..948 | 2155 | 100 | Plus |
3R | 32079331 | 3R | 8301757..8302066 | 208..517 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 8301512..8301702 | 17..207 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:28:46 has no hits.
BO08911.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:45 Download gff for
BO08911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-PA | 1..932 | 17..948 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:12 Download gff for
BO08911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7494-PA | 1..932 | 17..948 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:58 Download gff for
BO08911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 70..1004 | 14..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:57 Download gff for
BO08911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 70..1004 | 14..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:57 Download gff for
BO08911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8301509..8301702 | 14..207 | 99 | -> | Plus |
3R | 8301757..8302066 | 208..517 | 100 | -> | Plus |
3R | 8302124..8302554 | 518..948 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:58 Download gff for
BO08911.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4127231..4127424 | 14..207 | 99 | -> | Plus |
arm_3R | 4127479..4127788 | 208..517 | 100 | -> | Plus |
arm_3R | 4127846..4128276 | 518..948 | 100 | | Plus |
BO08911.complete Sequence
1096 bp (1096 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631313
> BO08911.complete
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG
GAGAACATCAAGTTCCTACTGCAGGATATTAACACTATGAGGCCCAAGCG
CGAGGGACGTTTCATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAGTG
AGCAGCTGAAAATCGATCCCTTTGTCTACGTTCCAGAGATGTGGGACAAG
AGCACGGCGAAGGTGAAAAGGGATGGGGCCAAGAAGCAGACAGAGCCGGC
GGAACCCCAAGAAGCAGTTGCCTCCAATGCAAGCTTTCTAGACCAT
BO08911.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1065 | CG7494-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-RA | 1220 | CG7494-RA | 73..1134 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8302124..8302684 | 518..1078 | 2805 | 100 | Plus |
3R | 32079331 | 3R | 8301757..8302066 | 208..517 | 1550 | 100 | Plus |
3R | 32079331 | 3R | 8301512..8301702 | 17..207 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:48:27 has no hits.
BO08911.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:27 Download gff for
BO08911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 1..1065 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:36 Download gff for
BO08911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 68..1137 | 14..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:25 Download gff for
BO08911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 73..1134 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:27 Download gff for
BO08911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 68..1137 | 14..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:19 Download gff for
BO08911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpL1-RA | 73..1134 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:19 Download gff for
BO08911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8301512..8301702 | 17..207 | 100 | -> | Plus |
3R | 8301757..8302066 | 208..517 | 100 | -> | Plus |
3R | 8302124..8302684 | 518..1080 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:25 Download gff for
BO08911.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4127234..4127424 | 17..207 | 100 | -> | Plus |
arm_3R | 4127479..4127788 | 208..517 | 100 | -> | Plus |
arm_3R | 4127846..4128406 | 518..1080 | 99 | | Plus |
BO08911.pep Sequence
Translation from 16 to 1096
> BO08911.pep
MQSILSSMRALALRQSTVEPLRLLHLSAVSEAARKGTREKARKKKVKVEV
KKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQ
EAIQCHRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPH
KFDHGEERKIIVFTKGNNEVLEAREAGASLVGGVELIKDITSGELLLSDY
QYVIAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYS
AAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLLQDINTMRPKREGRFI
TRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEPAEPQEA
VASNASFLDH
BO08911.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpL1-PA | 354 | CG7494-PA | 1..354 | 1..354 | 1813 | 100 | Plus |