Clone BO08911 Report

Search the DGRC for BO08911

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptmRpL1-RA
Protein status:BO08911.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO08911.3prime Sequence

884 bp (806 high quality bases) assembled on 2006-01-10

> BO08911.3prime
ATGGTCTAGAAAGCTTGCATTGGAGGCAACTGCTTCTTGGGGTTCCGCCG
GCTCTGTCTGCTTCTTGGCCCCATCCCTTTTCACCTTCGCCGTGCTCTTG
TCCCACATCTCTGGAACGTAGACAAAGGGATCGATTTTCAGCTGCTCACT
GCTTGGCGGGCTCTTCAGCAGGACACGTGTAATGAAACGTCCCTCGCGCT
TGGGCCTCATAGTGTTAATATCCTGCAGTAGGAACTTGATGTTCTCCTCA
AGCTTCTGGACATCCATGTCCAAAGTGCCCACACTGGCGGTGATCAGGCC
AAAGTTTTGCTGGTACTCATCCTTGGCTGCACTGTAACTAATGCCGCTGG
AGAATTTGACGATCATCTCGGCCAGGTTGGTGCCCAGCGTCTCGCTCTTT
GGATTTGGGAACTTGCGTTTCATCAGGCCTCGCAGGGCCACCAGCTCGGC
CAGTATATTCGGATGGGCAATGACGTACTGGTAGTCGGAGAGCAGCAGCT
CGCCGCTGGTAATATCCTTAATGAGCTCCACGCCGCCGACTAGCGAGGCG
CCAGCTTCCCTGGCCTCCAGGACTTCATTATTTCCCTTGGTGAAAACTAT
GATCTTCCGCTCCTCGCCGTGGTCAAACTTGTGTGGAATCATGGCCATGC
GCTGGAAGTTATCCACAAAACGTGTGATCTTCTCCGCCTGCATGTTGAGT
TCAATATCCAAATTGAGGGGAGCATTGGGTACGTTGTACATGCTGGGATG
ATGCGTCTCCCGATGGCACTGGATAGCTTCCTGCACCGAGTACACTGGCC
AGCGGTAGTAGCGCCCCACATAGCAGTCATCTTTGGGCACCTGTTTCCAG
AAGTCATCCACATGTTTGTCCGCCCGTTTCACAT

BO08911.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7494-PA 1065 mRpL1-RA 197..1062 884..19 4305 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1220 CG7494-RA 269..1134 884..19 4315 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8302124..8302684 579..19 2805 100 Minus
3R 32079331 3R 8301762..8302066 884..580 1510 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 04:17:24 has no hits.

BO08911.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:44 Download gff for BO08911.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-PA 197..1065 18..884 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:10 Download gff for BO08911.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7494-PA 197..1065 18..884 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:59 Download gff for BO08911.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 269..1139 11..884 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:16 Download gff for BO08911.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 269..1139 11..884 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:16 Download gff for BO08911.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8301762..8302066 580..884 99 -> Minus
3R 8302124..8302689 11..579 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:59 Download gff for BO08911.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4127484..4127788 580..884 99 -> Minus
arm_3R 4127846..4128411 11..579 99   Minus

BO08911.5prime Sequence

948 bp (785 high quality bases) assembled on 2006-01-10

> BO08911.5prime
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG
GAGAACATCAAGTTCCTACTGCAGGATATTAACACTATGAGGCCCAAGCG
CGAGGGACGTTTCATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAG

BO08911.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7494-PA 1065 mRpL1-RA 1..932 17..948 4660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1220 CG7494-RA 73..1004 17..948 4660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8302124..8302554 518..948 2155 100 Plus
3R 32079331 3R 8301757..8302066 208..517 1550 100 Plus
3R 32079331 3R 8301512..8301702 17..207 955 100 Plus
Blast to na_te.dros performed on 2015-02-12 05:28:46 has no hits.

BO08911.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:45 Download gff for BO08911.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-PA 1..932 17..948 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:12 Download gff for BO08911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7494-PA 1..932 17..948 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:58 Download gff for BO08911.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 70..1004 14..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:57 Download gff for BO08911.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 70..1004 14..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:57 Download gff for BO08911.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8301509..8301702 14..207 99 -> Plus
3R 8301757..8302066 208..517 100 -> Plus
3R 8302124..8302554 518..948 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:58 Download gff for BO08911.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4127231..4127424 14..207 99 -> Plus
arm_3R 4127479..4127788 208..517 100 -> Plus
arm_3R 4127846..4128276 518..948 100   Plus

BO08911.complete Sequence

1096 bp (1096 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631313

> BO08911.complete
GAAGTTATCAGTCGACATGCAGTCCATTCTGTCTTCAATGAGGGCACTGG
CCCTGCGCCAGAGCACGGTGGAGCCCCTCCGCCTGCTGCATCTTTCCGCC
GTGAGCGAGGCGGCCCGTAAAGGAACTCGGGAGAAGGCCCGCAAGAAGAA
AGTCAAGGTGGAAGTGAAGAAGGTTGGATTCATCCCGCACAACCAGCGCA
ACAAGAAAATCAATGTGAAACGGGCGGACAAACATGTGGATGACTCCTGG
AAACAGGTGCCCAAAGATGACTGCTATGTGGGGCGCTACTACCGCTGGCC
AGTGTACTCGGTGCAGGAAGCTATCCAGTGCCATCGGGAGACGCATCATC
CCAGCATGTACAACGTACCCAATGCTCCCCTCAATTTGGATATTGAACTC
AACATGCAGGCGGAGAAGATCACACGTTTTGTGGATAACTTCCAGCGCAT
GGCCATGATTCCACACAAGTTTGACCACGGCGAGGAGCGGAAGATCATAG
TTTTCACCAAGGGAAATAATGAAGTCCTGGAGGCCAGGGAAGCTGGCGCC
TCGCTAGTCGGCGGCGTGGAGCTCATTAAGGATATTACCAGCGGCGAGCT
GCTGCTCTCCGACTACCAGTACGTCATTGCCCATCCGAATATACTGGCCG
AGCTGGTGGCCCTGCGAGGCCTGATGAAACGCAAGTTCCCAAATCCAAAG
AGCGAGACGCTGGGCACCAACCTGGCCGAGATGATCGTCAAATTCTCCAG
CGGCATTAGTTACAGTGCAGCCAAGGATGAGTACCAGCAAAACTTTGGCC
TGATCACCGCCAGTGTGGGCACTTTGGACATGGATGTCCAGAAGCTTGAG
GAGAACATCAAGTTCCTACTGCAGGATATTAACACTATGAGGCCCAAGCG
CGAGGGACGTTTCATTACACGTGTCCTGCTGAAGAGCCCGCCAAGCAGTG
AGCAGCTGAAAATCGATCCCTTTGTCTACGTTCCAGAGATGTGGGACAAG
AGCACGGCGAAGGTGAAAAGGGATGGGGCCAAGAAGCAGACAGAGCCGGC
GGAACCCCAAGAAGCAGTTGCCTCCAATGCAAGCTTTCTAGACCAT

BO08911.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1065 CG7494-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-RA 1220 CG7494-RA 73..1134 17..1078 5310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8302124..8302684 518..1078 2805 100 Plus
3R 32079331 3R 8301757..8302066 208..517 1550 100 Plus
3R 32079331 3R 8301512..8301702 17..207 955 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:48:27 has no hits.

BO08911.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:27 Download gff for BO08911.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 1..1065 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:36 Download gff for BO08911.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 68..1137 14..1086 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:25 Download gff for BO08911.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 73..1134 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:27 Download gff for BO08911.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 68..1137 14..1086 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:19 Download gff for BO08911.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL1-RA 73..1134 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:19 Download gff for BO08911.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8301512..8301702 17..207 100 -> Plus
3R 8301757..8302066 208..517 100 -> Plus
3R 8302124..8302684 518..1080 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:25 Download gff for BO08911.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4127234..4127424 17..207 100 -> Plus
arm_3R 4127479..4127788 208..517 100 -> Plus
arm_3R 4127846..4128406 518..1080 99   Plus

BO08911.pep Sequence

Translation from 16 to 1096

> BO08911.pep
MQSILSSMRALALRQSTVEPLRLLHLSAVSEAARKGTREKARKKKVKVEV
KKVGFIPHNQRNKKINVKRADKHVDDSWKQVPKDDCYVGRYYRWPVYSVQ
EAIQCHRETHHPSMYNVPNAPLNLDIELNMQAEKITRFVDNFQRMAMIPH
KFDHGEERKIIVFTKGNNEVLEAREAGASLVGGVELIKDITSGELLLSDY
QYVIAHPNILAELVALRGLMKRKFPNPKSETLGTNLAEMIVKFSSGISYS
AAKDEYQQNFGLITASVGTLDMDVQKLEENIKFLLQDINTMRPKREGRFI
TRVLLKSPPSSEQLKIDPFVYVPEMWDKSTAKVKRDGAKKQTEPAEPQEA
VASNASFLDH

BO08911.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL1-PA 354 CG7494-PA 1..354 1..354 1813 100 Plus