Clone Sequence Records
BO08917.3prime Sequence
845 bp (804 high quality bases) assembled on 2006-01-10
> BO08917.3prime
ATGGTCTAGAAAGCTTGCGTGCTCTTGCAGGCTAAGCTTTAACGCCTGCT
CGATCATCTCCTGCTCCTGCTGCCGCTCCAGTTCGAACTTTCTCTGCTCT
TGCTGTGACAGTCGCATGGCCATGGCCAAATCGGGATCCACATACCGGAA
GCCACCATCGTCGTCTTCGTCGGAGGCGGGCGAACCGCTTTGGAGATTTG
CATGGGCGCCAAGCAGCGATTCCTGCAGGACTCGTTGCAGCTGCTCGTCA
TCTTCTGGCAGGAGATCGGAGCCCACGACGTTTTGGCCTCTCAACACTTC
CCAGATATCCACCTTGTCGTCGTCCCGAGCGTCCACGCCACAGGCTCCGC
TTGTTTCCACCAAACTCTGCTCAATTGCATACTGTAGCATGTCATCCTCG
TCAAGAGGAATTTGCCGACGGACATCGCTGCCCCTGTTTGTGTAGTGAGC
TGGGATATCGAAGCAGCGATCATCGACCAAACAAGTGACACGATCTTGCT
CCTGCAGCGTGGCCACGTGATCAACGGGCGTGGTTAAAGCAAATACGTTT
CCAAATGTAATACAGGCATTTAAAACATGGAAGAGCGGGATTTCCACTTT
GACTGGAAAACCAGCAGGCAGCTGCATGGTGATAAAGTCTCTCAGCTTGG
ACACATGTGGACTGGCCATGGTGGACATGAGATCCAAAATGGGAAGCACC
TGTTCCTGCAGTCGAATGGGATGCTCCTCGGCTAACCATAAGTTGGCTCT
AAAGCGCTGCACCTTTGTGCTCAGGTTCTTGGGACCGCCAACATCCCTTC
CGTGAAGATCAAACTCCTGAGTAAAATACTCCTCCGGAGTACAGA
BO08917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PC | 1914 | CG15118-RC | 1089..1911 | 841..19 | 4090 | 99.8 | Minus |
| CG15118-PA | 1914 | CG15118-RA | 1089..1911 | 841..19 | 4090 | 99.8 | Minus |
| CG15118-PB | 1914 | CG15118-RB | 1089..1911 | 841..19 | 4090 | 99.8 | Minus |
| CG15118-PD | 1779 | CG15118-RD | 954..1776 | 841..19 | 4090 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RD | 2345 | CG15118-RD | 1032..1854 | 841..19 | 4100 | 99.9 | Minus |
| CG15118-RB | 2528 | CG15118-RB | 1215..2037 | 841..19 | 4100 | 99.9 | Minus |
| CG15118-RA | 2475 | CG15118-RA | 1162..1984 | 841..19 | 4100 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19134883..19135491 | 233..841 | 3030 | 99.8 | Plus |
| 2R | 25286936 | 2R | 19134218..19134432 | 19..233 | 1075 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:43:37 has no hits.
BO08917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:53 Download gff for
BO08917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PA | 1085..1914 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:24 Download gff for
BO08917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PD | 950..1779 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:33:02 Download gff for
BO08917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 1158..1987 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:52:48 Download gff for
BO08917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 1158..1987 | 15..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:52:48 Download gff for
BO08917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19134215..19134431 | 15..232 | 99 | <- | Plus |
| 2R | 19134883..19135495 | 233..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:33:02 Download gff for
BO08917.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15021720..15021936 | 15..232 | 99 | <- | Plus |
| arm_2R | 15022388..15023000 | 233..844 | 99 | | Plus |
BO08917.5prime Sequence
981 bp (808 high quality bases) assembled on 2006-01-10
> BO08917.5prime
GAAGTTATCAGTCGACATGAGGAGCGTCGAGGAGATCAAAGCGGAGTACC
CGCTGCACTGGCACATCTGGCACAACGAACTGGAGCAGCTGCAGGCGGCC
ATCGACCAGAACGATAAGGAGAAAATCGATCCCCGCGGCCGGACGCCACT
GATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTTCTGG
CGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGATTGTCCAG
GAAGCGGTCTGCACCGGCGATGTGGACATACTGACGGCCATCATCGAAGT
CCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCTAAGCTGC
TGCAGCACCTATTGGACGCACCAGATTTCTACATCGAGATGAAGTGGGAA
TTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCGACACCTA
CAAGGTCTACAAGCGGGGAGCCAACGTCCGGATAGATACCACCCTGCTGG
GCTTCGACAACAACACCTGGCAACGGGGCAATCGCTCTTACATCTTCAAG
GGGGCCAAAGAAACTGCCACGATGATCGAGATCGATCACGATACAAACGA
AGTAATGGTGGAGGAGATGAGCAGCGATATCGGTGATATTGTGGCCATTC
CACCAGCCTTGGGCACCGTGAGGGCGCGCCTCAATGCCCCGGTGATCACG
AACAACATCGAGATGGACAAGATTAGCTTCGAGCGCAACAAGTGCGGCAT
ATGGGGATGGCGTAGCGAGAAATCTGAGATGATCAACGGCTACAACTGCA
AGGTGTATGGNGCCAGCAACGTGGAGTTTGTTACAAAGACGCGAATGGAT
CACCTTAGCGAGGAGCAAATTAAGAACAAGACAGCGAGGACTCCACTGCA
TAGCCTGCTGGGAATTGCTGATGAGGATTATGTGTCACCCGCTGATGCTG
CTGCGGCACTAAAAGATCGTACACCATCGCC
BO08917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PC | 1914 | CG15118-RC | 1..965 | 17..981 | 4806 | 99.8 | Plus |
| CG15118-PA | 1914 | CG15118-RA | 1..965 | 17..981 | 4806 | 99.8 | Plus |
| CG15118-PB | 1914 | CG15118-RB | 1..965 | 17..981 | 4806 | 99.8 | Plus |
| CG15118-PD | 1779 | CG15118-RD | 1..830 | 152..981 | 4131 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:49:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 127..1091 | 17..981 | 4814 | 99.9 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 127..1091 | 17..981 | 4814 | 99.9 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 74..1038 | 17..981 | 4814 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:49:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19136323..19136637 | 557..243 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19135939..19136255 | 874..558 | 1574 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19136695..19136830 | 242..107 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19135685..19135786 | 970..869 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19136951..19137043 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:49:27 has no hits.
BO08917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:56 Download gff for
BO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PA | 1..965 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:25 Download gff for
BO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PB | 1..965 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:50:28 Download gff for
BO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1038 | 9..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:42:30 Download gff for
BO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 65..1038 | 9..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:42:30 Download gff for
BO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19135685..19135780 | 875..970 | 100 | <- | Minus |
| 2R | 19135939..19136255 | 558..874 | 99 | <- | Minus |
| 2R | 19136323..19136637 | 243..557 | 100 | <- | Minus |
| 2R | 19136695..19136827 | 110..242 | 100 | <- | Minus |
| 2R | 19136951..19137047 | 9..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:50:28 Download gff for
BO08917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15023190..15023285 | 875..970 | 100 | <- | Minus |
| arm_2R | 15023444..15023760 | 558..874 | 99 | <- | Minus |
| arm_2R | 15023828..15024142 | 243..557 | 100 | <- | Minus |
| arm_2R | 15024200..15024332 | 110..242 | 100 | <- | Minus |
| arm_2R | 15024456..15024552 | 9..109 | 96 | | Minus |
BO08917.complete Sequence
1945 bp (1945 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631315
> BO08917.complete
GAAGTTATCAGTCGACATGAGGAGCGTCGAGGAGATCAAAGCGGAGTACC
CGCTGCACTGGCACATCTGGCACAACGAACTGGAGCAGCTGCAGGCGGCC
ATCGACCAGAACGATAAGGAGAAAATCGATCCCCGCGGCCGGACGCCACT
GATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGCCTTCTGG
CGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGATTGTCCAG
GAAGCGGTCTGCACCGGCGATGTGGACATACTGACGGCCATCATCGAAGT
CCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCTAAGCTGC
TGCAGCACCTATTGGACGCACCAGATTTCTACATCGAGATGAAGTGGGAA
TTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCGACACCTA
CAAGGTCTACAAGCGGGGAGCCAACGTCCGGATAGATACCACCCTGCTGG
GCTTCGACAACAACACCTGGCAACGGGGCAATCGCTCTTACATCTTCAAG
GGGGCCAAAGAAACTGCCACGATGATCGAGATCGATCACGATACAAACGA
AGTAATGGTGGAGGAGATGAGCAGCGATATCGGTGATATTGTGGCCATTC
CACCAGCCTTGGGCACCGTGAGGGCGCGCCTCAATGCCCCGGTGATCACG
AACAACATCGAGATGGACAAGATTAGCTTCGAGCGCAACAAGTGCGGCAT
ATGGGGATGGCGTAGCGAGAAATCTGAGATGATCAACGGCTACAACTGCA
AGGTGTATGGGGCCAGCAACGTGGAGTTTGTTACAAAGACGCGAATGGAT
CACCTTAGCGAGGAGCAAATTAAGAACAAGACAGCGAGGACTCCACTGCA
TAGCCTGCTGGGAATTGCTGATGAGGATTATGTGTCACCCGCTGATGCTG
CTGCGGCACTAAAAGATCGTACACCATCGCCCCGGTTGGAGGAAGCTTCC
AACGCTGGAGTTGAAAATGGTGGCCGAAACTCACCAGCCCCTGGAAATCA
AAGCAACGGAAGCTCCGCGGGTGCGTCGGGCACCAGTACTCCAAAGTCTT
CTGTTACTCCGGAGGAGTATTTTACTCAGGAGTTTGATCTTCACGGAAGG
GATGTTGGCGGTCCCAAGAACCTGAGCACAAAGGTGCAGCGCTTTAGAGC
CAACTTATGGTTAGCCGAGGAGCATCCCATTCGACTGCAGGAACAGGTGC
TTCCCATTTTGGATCTCATGTCCACCATGGCCAGTCCACATGTGTCCAAG
CTGAGAGACTTTATCACCATGCAGCTGCCTGCTGGTTTTCCAGTCAAAGT
GGAAATCCCGCTCTTCCATGTTTTAAATGCCTGTATTACATTTGGAAACG
TATTTGCTTTAACCACGCCCGTTGATCACGTGGCCACGCTGCAGGAGCAA
GATCGTGTCACTTGTTTGGTCGATGATCGCTGCTTCGATATCCCAGCTCA
CTACACAAACAGGGGCAGCGATGTCCGTCGGCAAATTCCTCTTGACGAGG
ATGACATGCTACAGTATGCAATTGAGCAGAGTTTGGTGGAAACAAGCGGA
GCCTGTGGCGTGGACGCTCGGGACGACGACAAGGTGGATATCTGGGAAGT
GTTGAGAGGCCAAAACGTCGTGGGCTCCGATCTCCTGCCAGAAGATGACG
AGCAGCTGCAACGAGTCCTGCAGGAATCGCTGCTTGGCGCCCATGCAAAT
CTCCAAAGCGGTTCGCCCGCCTCCGACGAAGACGACGATGGTGGCTTCCG
GTATGTGGATCCCGATTTGGCCATGGCCATGCGACTGTCACAGCAAGAGC
AGAGAAAGTTCGAACTGGAGCGGCAGCAGGAGCAGGAGATGATCGAGCAG
GCGTTAAAGCTTAGCCTGCAAGAGCACGCAAGCTTTCTAGACCAT
BO08917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RB | 1914 | CG15118-PB | 1..1911 | 17..1927 | 9540 | 99.9 | Plus |
| CG15118-RA | 1914 | CG15118-PA | 1..1911 | 17..1927 | 9540 | 99.9 | Plus |
| CG15118-RD | 1779 | CG15118-PD | 1..1776 | 152..1927 | 8865 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RB | 2528 | CG15118-RB | 127..2037 | 17..1927 | 9540 | 99.9 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 74..1984 | 17..1927 | 9540 | 99.9 | Plus |
| CG15118-RD | 2345 | CG15118-RD | 34..1854 | 107..1927 | 9090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19134883..19135625 | 1713..971 | 3700 | 99.9 | Minus |
| 2R | 25286936 | 2R | 19135939..19136255 | 874..558 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 19136323..19136637 | 557..243 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19134218..19134432 | 1927..1713 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 19136695..19136830 | 242..107 | 680 | 100 | Minus |
| 2R | 25286936 | 2R | 19135685..19135786 | 970..869 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19136951..19137043 | 109..17 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:33:38 has no hits.
BO08917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:06 Download gff for
BO08917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 1..1914 | 17..1931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:10 Download gff for
BO08917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 73..1995 | 9..1931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:48 Download gff for
BO08917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 74..1984 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:06 Download gff for
BO08917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 73..1995 | 9..1931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:43 Download gff for
BO08917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 74..1984 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:43 Download gff for
BO08917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19134216..19134431 | 1714..1929 | 99 | <- | Minus |
| 2R | 19134883..19135625 | 971..1713 | 99 | <- | Minus |
| 2R | 19135685..19135780 | 875..970 | 100 | <- | Minus |
| 2R | 19135939..19136255 | 558..874 | 100 | <- | Minus |
| 2R | 19136323..19136637 | 243..557 | 100 | <- | Minus |
| 2R | 19136695..19136827 | 110..242 | 100 | <- | Minus |
| 2R | 19136951..19137043 | 17..109 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:48 Download gff for
BO08917.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15024200..15024332 | 110..242 | 100 | <- | Minus |
| arm_2R | 15024456..15024548 | 17..109 | 100 | | Minus |
| arm_2R | 15021721..15021936 | 1714..1929 | 99 | <- | Minus |
| arm_2R | 15022388..15023130 | 971..1713 | 99 | <- | Minus |
| arm_2R | 15023190..15023285 | 875..970 | 100 | <- | Minus |
| arm_2R | 15023444..15023760 | 558..874 | 100 | <- | Minus |
| arm_2R | 15023828..15024142 | 243..557 | 100 | <- | Minus |
BO08917.pep Sequence
Translation from 16 to 1945
> BO08917.pep
MRSVEEIKAEYPLHWHIWHNELEQLQAAIDQNDKEKIDPRGRTPLMLAVR
LANLPCVKCLLAAKCNATYEYEGWSIVQEAVCTGDVDILTAIIEVRDLQR
HVQRVTHVPKLLQHLLDAPDFYIEMKWEFTSWVPLMSRLCPSDTYKVYKR
GANVRIDTTLLGFDNNTWQRGNRSYIFKGAKETATMIEIDHDTNEVMVEE
MSSDIGDIVAIPPALGTVRARLNAPVITNNIEMDKISFERNKCGIWGWRS
EKSEMINGYNCKVYGASNVEFVTKTRMDHLSEEQIKNKTARTPLHSLLGI
ADEDYVSPADAAAALKDRTPSPRLEEASNAGVENGGRNSPAPGNQSNGSS
AGASGTSTPKSSVTPEEYFTQEFDLHGRDVGGPKNLSTKVQRFRANLWLA
EEHPIRLQEQVLPILDLMSTMASPHVSKLRDFITMQLPAGFPVKVEIPLF
HVLNACITFGNVFALTTPVDHVATLQEQDRVTCLVDDRCFDIPAHYTNRG
SDVRRQIPLDEDDMLQYAIEQSLVETSGACGVDARDDDKVDIWEVLRGQN
VVGSDLLPEDDEQLQRVLQESLLGAHANLQSGSPASDEDDDGGFRYVDPD
LAMAMRLSQQEQRKFELERQQEQEMIEQALKLSLQEHASFLDH
BO08917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PB | 637 | CG15118-PB | 1..637 | 1..637 | 3337 | 100 | Plus |
| CG15118-PA | 637 | CG15118-PA | 1..637 | 1..637 | 3337 | 100 | Plus |
| CG15118-PD | 592 | CG15118-PD | 1..592 | 46..637 | 3090 | 100 | Plus |
| CG15118-PE | 630 | CG15118-PE | 1..578 | 1..576 | 2984 | 98.6 | Plus |
| CG5742-PB | 543 | CG5742-PB | 84..539 | 10..505 | 495 | 27.1 | Plus |
