Clone BO08918 Report

Search the DGRC for BO08918

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG8306-RA
Protein status:BO08918.pep: validated full length
Sequenced Size:1582

Clone Sequence Records

BO08918.3prime Sequence

979 bp (835 high quality bases) assembled on 2006-01-10

> BO08918.3prime
ATGGTCTAGAAAGCTTGCAAGCAGTCCAAAAAGGTAGTAAAGGACGGGCA
GGACAAGAGCTGCTTTAGCCGTCGAGATTCCGGTGAGGCACACGATCAAC
TTGAAGACTCCATACCAAAACGAGAGCTGCAGCGCCACATGAAGACCCAG
GAGAATTTTGTCCTTGCGACGCGCCTTCTCCAGATTCTTGATGGGCTCCT
TGCTGAGATACTGACGCACGCCGAGGATCGTATTGGAAAAGTACTCATCC
CACGCCAGCTCCCCGATGTCGATGAAGAACTTCTTCTTGTCCACTATGTT
CAAGGTCTTCGATAGCGCCAATAGACGCTTGCTGTCAAAGTGCCACTCGG
TGAAGATGAACTTTTCCAGGGTATTCAGTGAGTTCCAAACGTTCTTGTGC
AGACGAACCAAGATAGGCCTGCCGCCTCCAATTTTCGTGACCAGATCCAG
GATAATAGCGGGTATGAAATGAAACAGAATGGCGCTCAGTCGGAAGACCC
AGAGGCTCTTCACCAGACGCAGGTTGGGATACCAGACGGCACTGTTCAGA
GGATAGTCGTGCAGATAGCTGTTGATCTTGTCCGTCATCAGCTCAAAGCG
GAAGGGTTTGTATGTGCTGGAGGTCAGGTGGAAGATCTGCAGATCGGCCG
GGCGTCCTCCGTTCTTCGCCTGCAGCGAGTTGACATAATAGCCAGTGGTT
ATGATGCCATTGACCACCACATCGATGGGTATGTAGTCCATAATGATGCT
GGGATCCAGGGGAAGGCGACGCAGTACGCCCTTCGATGCGCCCATGAAGA
AGCCCTGCGGACCGTTCTTCGAAATGGTCCATCCGGGAATGGGTTCCTTC
CAAGCGGCGGTGATCATACTCGGACGAACAATGCCGCAGGGGGACTTGCT
GGNCACATTGGCCACCTCGTGCTCCGCCAGATGCTTTGTAAAAGTATAGG
TATTGGGGTGATCCTTCAGAAGTTTTGGT

BO08918.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-PA 1551 CG8306-RA 588..1548 979..19 4736 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:30:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 2211 CG8306-RA 1144..2104 979..19 4764 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16590138..16590588 413..863 2255 100 Plus
2R 25286936 2R 16589817..16590074 155..412 1290 100 Plus
2R 25286936 2R 16589625..16589760 19..154 680 100 Plus
2R 25286936 2R 16590653..16590762 864..973 509 97.3 Plus
Blast to na_te.dros performed on 2015-02-08 14:30:23 has no hits.

BO08918.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:57 Download gff for BO08918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 588..1551 15..979 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:27 Download gff for BO08918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 588..1551 15..979 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:56:37 Download gff for BO08918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 1144..2108 14..979 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:03 Download gff for BO08918.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 1144..2108 14..979 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:03 Download gff for BO08918.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16589621..16589760 14..154 98 <- Plus
2R 16589817..16590074 155..412 100 <- Plus
2R 16590138..16590588 413..863 100 <- Plus
2R 16590653..16590766 864..979 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:56:37 Download gff for BO08918.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12477126..12477265 14..154 98 <- Plus
arm_2R 12477322..12477579 155..412 100 <- Plus
arm_2R 12477643..12478093 413..863 100 <- Plus
arm_2R 12478158..12478271 864..979 94   Plus

BO08918.5prime Sequence

798 bp (797 high quality bases) assembled on 2006-01-10

> BO08918.5prime
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCAGGGCTTCTTCATGGGCGCATC

BO08918.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-PA 1551 CG8306-RA 1..782 17..798 3910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 2211 CG8306-RA 556..1338 16..798 3915 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16590826..16591413 609..22 2940 100 Minus
2R 25286936 2R 16590653..16590762 719..610 550 100 Minus
2R 25286936 2R 16590510..16590588 798..720 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:53:06 has no hits.

BO08918.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:58 Download gff for BO08918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 1..782 17..798 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:28 Download gff for BO08918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-PA 1..782 17..798 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:37 Download gff for BO08918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 556..1338 16..798 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:14 Download gff for BO08918.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 556..1338 16..798 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:14 Download gff for BO08918.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16590510..16590588 720..798 100 <- Minus
2R 16590653..16590762 610..719 100 <- Minus
2R 16590826..16591410 25..609 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:37 Download gff for BO08918.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12478015..12478093 720..798 100 <- Minus
arm_2R 12478158..12478267 610..719 100 <- Minus
arm_2R 12478331..12478915 25..609 100 <- Minus

BO08918.complete Sequence

1582 bp (1582 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631316

> BO08918.complete
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCAGGGCTTCTTCATGGGCGCATCGA
AGGGCGTACTGCGTCGCCTTCCCCTGGATCCCAGCATCATTATGGACTAC
ATACCCATCGATGTGGTGGTCAATGGCATCATAACCACTGGCTATTATGT
CAACTCGCTGCAGGCGAAGAACGGAGGACGCCCGGCCGATCTGCAGATCT
TCCACCTGACCTCCAGCACATACAAACCCTTCCGCTTTGAGCTGATGACG
GACAAGATCAACAGCTATCTGCACGACTATCCTCTGAACAGTGCCGTCTG
GTATCCCAACCTGCGTCTGGTGAAGAGCCTCTGGGTCTTCCGACTGAGCG
CCATTCTGTTTCATTTCATACCCGCTATTATCCTGGATCTGGTCACGAAA
ATTGGAGGCGGCAGGCCTATCTTGGTTCGTCTGCACAAGAACGTTTGGAA
CTCACTGAATACCCTGGAAAAGTTCATCTTCACCGAGTGGCACTTTGACA
GCAAGCGTCTATTGGCGCTATCGAAGACCTTGAACATAGTGGACAAGAAG
AAGTTCTTCATCGACATCGGGGAGCTGGCGTGGGATGAGTACTTTTCCAA
TACGATCCTCGGCGTGCGTCAGTATCTCAGCAAGGAGCCCATCAAGAATC
TGGAGAAGGCGCGTCGCAAGGACAAAATTCTCCTGGGTCTTCATGTGGCG
CTGCAGCTCTCGTTTTGGTATGGAGTCTTCAAGTTGATCGTGTGCCTCAC
CGGAATCTCGACGGCTAAAGCAGCTCTTGTCCTGCCCGTCCTTTACTACC
TTTTTGGACTGCTTGCAAGCTTTCTAGACCAT

BO08918.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 1551 CG8306-PA 1..1548 17..1564 7740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-RA 2211 CG8306-RA 556..2104 16..1564 7745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16590826..16591413 609..22 2940 100 Minus
2R 25286936 2R 16590138..16590588 1170..720 2255 100 Minus
2R 25286936 2R 16589817..16590074 1428..1171 1290 100 Minus
2R 25286936 2R 16589625..16589760 1564..1429 680 100 Minus
2R 25286936 2R 16590653..16590762 719..610 550 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:07:36 has no hits.

BO08918.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:28 Download gff for BO08918.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 1..1551 17..1568 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:38 Download gff for BO08918.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 623..2175 16..1569 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:06 Download gff for BO08918.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 557..2104 17..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:28 Download gff for BO08918.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 623..2175 16..1569 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:29 Download gff for BO08918.complete
Subject Subject Range Query Range Percent Splice Strand
CG8306-RA 557..2104 17..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:29 Download gff for BO08918.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16589623..16589760 1429..1566 98 <- Minus
2R 16589817..16590074 1171..1428 100 <- Minus
2R 16590138..16590588 720..1170 100 <- Minus
2R 16590653..16590762 610..719 100 <- Minus
2R 16590826..16591417 17..609 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:06 Download gff for BO08918.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12477128..12477265 1429..1566 98 <- Minus
arm_2R 12477322..12477579 1171..1428 100 <- Minus
arm_2R 12477643..12478093 720..1170 100 <- Minus
arm_2R 12478158..12478267 610..719 100 <- Minus
arm_2R 12478331..12478922 17..609 99   Minus

BO08918.pep Sequence

Translation from 16 to 1582

> BO08918.pep
MASSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKK
GKSVQERLEELKKNSVFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKD
RQTLIDNVNVVFHSAATLDFFQSLKETTNINLRGTRRVVELCQQIKNLDA
LVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKELEPKLL
KDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISK
NGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQA
KNGGRPADLQIFHLTSSTYKPFRFELMTDKINSYLHDYPLNSAVWYPNLR
LVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRPILVRLHKNVWNSLNTL
EKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILGV
RQYLSKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFKLIVCLTGISTA
KAALVLPVLYYLFGLLASFLDH

BO08918.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8306-PA 516 CG8306-PA 1..516 1..516 2660 100 Plus
CG5065-PE 625 CG5065-PE 118..587 5..481 894 38.8 Plus
CG5065-PD 625 CG5065-PD 118..587 5..481 894 38.8 Plus
CG5065-PC 625 CG5065-PC 118..587 5..481 894 38.8 Plus
CG5065-PB 625 CG5065-PB 118..587 5..481 894 38.8 Plus