Clone Sequence Records
BO08918.3prime Sequence
979 bp (835 high quality bases) assembled on 2006-01-10
> BO08918.3prime
ATGGTCTAGAAAGCTTGCAAGCAGTCCAAAAAGGTAGTAAAGGACGGGCA
GGACAAGAGCTGCTTTAGCCGTCGAGATTCCGGTGAGGCACACGATCAAC
TTGAAGACTCCATACCAAAACGAGAGCTGCAGCGCCACATGAAGACCCAG
GAGAATTTTGTCCTTGCGACGCGCCTTCTCCAGATTCTTGATGGGCTCCT
TGCTGAGATACTGACGCACGCCGAGGATCGTATTGGAAAAGTACTCATCC
CACGCCAGCTCCCCGATGTCGATGAAGAACTTCTTCTTGTCCACTATGTT
CAAGGTCTTCGATAGCGCCAATAGACGCTTGCTGTCAAAGTGCCACTCGG
TGAAGATGAACTTTTCCAGGGTATTCAGTGAGTTCCAAACGTTCTTGTGC
AGACGAACCAAGATAGGCCTGCCGCCTCCAATTTTCGTGACCAGATCCAG
GATAATAGCGGGTATGAAATGAAACAGAATGGCGCTCAGTCGGAAGACCC
AGAGGCTCTTCACCAGACGCAGGTTGGGATACCAGACGGCACTGTTCAGA
GGATAGTCGTGCAGATAGCTGTTGATCTTGTCCGTCATCAGCTCAAAGCG
GAAGGGTTTGTATGTGCTGGAGGTCAGGTGGAAGATCTGCAGATCGGCCG
GGCGTCCTCCGTTCTTCGCCTGCAGCGAGTTGACATAATAGCCAGTGGTT
ATGATGCCATTGACCACCACATCGATGGGTATGTAGTCCATAATGATGCT
GGGATCCAGGGGAAGGCGACGCAGTACGCCCTTCGATGCGCCCATGAAGA
AGCCCTGCGGACCGTTCTTCGAAATGGTCCATCCGGGAATGGGTTCCTTC
CAAGCGGCGGTGATCATACTCGGACGAACAATGCCGCAGGGGGACTTGCT
GGNCACATTGGCCACCTCGTGCTCCGCCAGATGCTTTGTAAAAGTATAGG
TATTGGGGTGATCCTTCAGAAGTTTTGGT
BO08918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-PA | 1551 | CG8306-RA | 588..1548 | 979..19 | 4736 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:30:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 2211 | CG8306-RA | 1144..2104 | 979..19 | 4764 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16590138..16590588 | 413..863 | 2255 | 100 | Plus |
2R | 25286936 | 2R | 16589817..16590074 | 155..412 | 1290 | 100 | Plus |
2R | 25286936 | 2R | 16589625..16589760 | 19..154 | 680 | 100 | Plus |
2R | 25286936 | 2R | 16590653..16590762 | 864..973 | 509 | 97.3 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:30:23 has no hits.
BO08918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:57 Download gff for
BO08918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 588..1551 | 15..979 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:27 Download gff for
BO08918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 588..1551 | 15..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:56:37 Download gff for
BO08918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 1144..2108 | 14..979 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:03 Download gff for
BO08918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 1144..2108 | 14..979 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:03 Download gff for
BO08918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16589621..16589760 | 14..154 | 98 | <- | Plus |
2R | 16589817..16590074 | 155..412 | 100 | <- | Plus |
2R | 16590138..16590588 | 413..863 | 100 | <- | Plus |
2R | 16590653..16590766 | 864..979 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:56:37 Download gff for
BO08918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12477126..12477265 | 14..154 | 98 | <- | Plus |
arm_2R | 12477322..12477579 | 155..412 | 100 | <- | Plus |
arm_2R | 12477643..12478093 | 413..863 | 100 | <- | Plus |
arm_2R | 12478158..12478271 | 864..979 | 94 | | Plus |
BO08918.5prime Sequence
798 bp (797 high quality bases) assembled on 2006-01-10
> BO08918.5prime
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCAGGGCTTCTTCATGGGCGCATC
BO08918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-PA | 1551 | CG8306-RA | 1..782 | 17..798 | 3910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 2211 | CG8306-RA | 556..1338 | 16..798 | 3915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16590826..16591413 | 609..22 | 2940 | 100 | Minus |
2R | 25286936 | 2R | 16590653..16590762 | 719..610 | 550 | 100 | Minus |
2R | 25286936 | 2R | 16590510..16590588 | 798..720 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:53:06 has no hits.
BO08918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:58 Download gff for
BO08918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:28 Download gff for
BO08918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-PA | 1..782 | 17..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:37 Download gff for
BO08918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 556..1338 | 16..798 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:14 Download gff for
BO08918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 556..1338 | 16..798 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:14 Download gff for
BO08918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16590510..16590588 | 720..798 | 100 | <- | Minus |
2R | 16590653..16590762 | 610..719 | 100 | <- | Minus |
2R | 16590826..16591410 | 25..609 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:37 Download gff for
BO08918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12478015..12478093 | 720..798 | 100 | <- | Minus |
arm_2R | 12478158..12478267 | 610..719 | 100 | <- | Minus |
arm_2R | 12478331..12478915 | 25..609 | 100 | <- | Minus |
BO08918.complete Sequence
1582 bp (1582 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631316
> BO08918.complete
GAAGTTATCAGTCGACATGGCCAGCTCACCCATCACAGACTTCTATGCGG
GTCGCAATGTCTTCATCACGGGCGCCACTGGCTTCGTGGGCGTCACCATT
GTGGAGAAACTATTGCGCGATGTTCCCAACGTGGGCACACTGTACCTGCT
GATGCGCGCCAAGAAGGGCAAGAGTGTGCAGGAGCGACTGGAGGAGCTGA
AGAAGAACTCCGTTTTCGACAAGTTCAAGGAACTGCAGCTGCAGTCGCGT
CTCTCCAAGATCGTGCCCATCGAAGGCGATGTCGGCTTGGAGCATCTGGG
CATCTCGCCGAAGGATCGCCAGACCCTGATCGACAACGTGAATGTTGTCT
TTCACTCGGCTGCCACTTTGGACTTCTTTCAATCTCTGAAGGAGACCACC
AACATCAACTTGAGGGGCACTCGGCGAGTTGTGGAGCTGTGCCAGCAGAT
CAAGAACCTGGATGCTTTGGTCCATGTGTCCAGCGCCTATGTGAATGCCT
ATCTGACCAAGGTCGAGGAGAAGCTATATCCCGCGCCCGAAGATCCAGAG
AAGATCATCCAGCTCTCGGAGACGCTCAACGATGATGCCCTCAAGGAACT
GGAACCAAAACTTCTGAAGGATCACCCCAATACCTATACCTTTACAAAGC
ATCTGGCGGAGCACGAGGTGGCCAATGTGGCCAGCAAGTTCCCCTGCGGC
ATTGTTCGTCCGAGTATGATCACCGCCGCTTGGAAGGAACCCATTCCCGG
ATGGACCATTTCGAAGAACGGTCCGCAGGGCTTCTTCATGGGCGCATCGA
AGGGCGTACTGCGTCGCCTTCCCCTGGATCCCAGCATCATTATGGACTAC
ATACCCATCGATGTGGTGGTCAATGGCATCATAACCACTGGCTATTATGT
CAACTCGCTGCAGGCGAAGAACGGAGGACGCCCGGCCGATCTGCAGATCT
TCCACCTGACCTCCAGCACATACAAACCCTTCCGCTTTGAGCTGATGACG
GACAAGATCAACAGCTATCTGCACGACTATCCTCTGAACAGTGCCGTCTG
GTATCCCAACCTGCGTCTGGTGAAGAGCCTCTGGGTCTTCCGACTGAGCG
CCATTCTGTTTCATTTCATACCCGCTATTATCCTGGATCTGGTCACGAAA
ATTGGAGGCGGCAGGCCTATCTTGGTTCGTCTGCACAAGAACGTTTGGAA
CTCACTGAATACCCTGGAAAAGTTCATCTTCACCGAGTGGCACTTTGACA
GCAAGCGTCTATTGGCGCTATCGAAGACCTTGAACATAGTGGACAAGAAG
AAGTTCTTCATCGACATCGGGGAGCTGGCGTGGGATGAGTACTTTTCCAA
TACGATCCTCGGCGTGCGTCAGTATCTCAGCAAGGAGCCCATCAAGAATC
TGGAGAAGGCGCGTCGCAAGGACAAAATTCTCCTGGGTCTTCATGTGGCG
CTGCAGCTCTCGTTTTGGTATGGAGTCTTCAAGTTGATCGTGTGCCTCAC
CGGAATCTCGACGGCTAAAGCAGCTCTTGTCCTGCCCGTCCTTTACTACC
TTTTTGGACTGCTTGCAAGCTTTCTAGACCAT
BO08918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 1551 | CG8306-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-RA | 2211 | CG8306-RA | 556..2104 | 16..1564 | 7745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16590826..16591413 | 609..22 | 2940 | 100 | Minus |
2R | 25286936 | 2R | 16590138..16590588 | 1170..720 | 2255 | 100 | Minus |
2R | 25286936 | 2R | 16589817..16590074 | 1428..1171 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 16589625..16589760 | 1564..1429 | 680 | 100 | Minus |
2R | 25286936 | 2R | 16590653..16590762 | 719..610 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:07:36 has no hits.
BO08918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:28 Download gff for
BO08918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 1..1551 | 17..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:38 Download gff for
BO08918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 623..2175 | 16..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:29:06 Download gff for
BO08918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 557..2104 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:28 Download gff for
BO08918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 623..2175 | 16..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:11:29 Download gff for
BO08918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8306-RA | 557..2104 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:29 Download gff for
BO08918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16589623..16589760 | 1429..1566 | 98 | <- | Minus |
2R | 16589817..16590074 | 1171..1428 | 100 | <- | Minus |
2R | 16590138..16590588 | 720..1170 | 100 | <- | Minus |
2R | 16590653..16590762 | 610..719 | 100 | <- | Minus |
2R | 16590826..16591417 | 17..609 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:29:06 Download gff for
BO08918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12477128..12477265 | 1429..1566 | 98 | <- | Minus |
arm_2R | 12477322..12477579 | 1171..1428 | 100 | <- | Minus |
arm_2R | 12477643..12478093 | 720..1170 | 100 | <- | Minus |
arm_2R | 12478158..12478267 | 610..719 | 100 | <- | Minus |
arm_2R | 12478331..12478922 | 17..609 | 99 | | Minus |
BO08918.pep Sequence
Translation from 16 to 1582
> BO08918.pep
MASSPITDFYAGRNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKK
GKSVQERLEELKKNSVFDKFKELQLQSRLSKIVPIEGDVGLEHLGISPKD
RQTLIDNVNVVFHSAATLDFFQSLKETTNINLRGTRRVVELCQQIKNLDA
LVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDALKELEPKLL
KDHPNTYTFTKHLAEHEVANVASKFPCGIVRPSMITAAWKEPIPGWTISK
NGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQA
KNGGRPADLQIFHLTSSTYKPFRFELMTDKINSYLHDYPLNSAVWYPNLR
LVKSLWVFRLSAILFHFIPAIILDLVTKIGGGRPILVRLHKNVWNSLNTL
EKFIFTEWHFDSKRLLALSKTLNIVDKKKFFIDIGELAWDEYFSNTILGV
RQYLSKEPIKNLEKARRKDKILLGLHVALQLSFWYGVFKLIVCLTGISTA
KAALVLPVLYYLFGLLASFLDH
BO08918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8306-PA | 516 | CG8306-PA | 1..516 | 1..516 | 2660 | 100 | Plus |
CG5065-PE | 625 | CG5065-PE | 118..587 | 5..481 | 894 | 38.8 | Plus |
CG5065-PD | 625 | CG5065-PD | 118..587 | 5..481 | 894 | 38.8 | Plus |
CG5065-PC | 625 | CG5065-PC | 118..587 | 5..481 | 894 | 38.8 | Plus |
CG5065-PB | 625 | CG5065-PB | 118..587 | 5..481 | 894 | 38.8 | Plus |