Clone Sequence Records
BO08919.3prime Sequence
934 bp (835 high quality bases) assembled on 2006-01-10
> BO08919.3prime
ATGGTCTAGAAAGCTTGCGTAAACGGGTCCGCTGAATCCCTCTGTGCCAG
AGATTATCCGCAGTTGATCGTTGAAGCTCTGCGCGGGCGGAATCTGATTC
TTCTTAGAATCCTTTTCCATTGAACGGGATCGCAGATGCGGCTTATTCTT
AACGCAACTGAGTGGAGTTCGCTTTTGTGCGGACAGGGGGGTACTGTTTG
TCTTGGGCGTAATGGATCCTCCGGTCACCGGGGACCCCTCCTCTTGGTCA
ACATAGATCTTTGGCTTGTTGGCTCTGGCGGGCTTGCGCGGTGGCACACG
ACGCTTGTGACCCAAACGCACTCGCTCCAAATGTTTGTTCGACGGCACTT
CTGGTAGCTGCTCCTCGCCAGCGACAAAGGAGGCCATGCTGCTGCCAGTG
CTGAGATTCAGGGTCAGTGTTTCCAGGATGTGCTCCAGCATCTGGGCCTC
GCGTGCCTCCTCCTCCTCGTCGTCGCAGAAGATGATGGGTGTGCGATCGA
CGCCCAGGCTGGGCGATCGGGGATCACCATGGGGCTGCTGTTCTGGCGGG
GGCGTGGCCATTTTCACCTGGCCCTGCTCCAGATTCGGCTCCTGATACGG
CAGCAGCTGTTGCTCGCAAGGCAAGGTTTCTTCCTGATCATAGGGCAGTG
AAACAATCTCCAGGGAAATATTGTTGTGTGCAGCAGACGGCGGTGTGCCG
AAGCTATCGCAGCTCTCCTCTAAATCCACTTGGGGCGGTGATGCAGGCAC
TGCTCTCTGTGCTGTACCCACCCTGGTGTCCACGAAGAGATCGGCGAATG
TGTCATCCATATTAAGCGAACGAACCTCATCGAGGACCAGTGGAGTGCGA
TTCAGCTGAGGAGAGCGAGGATCGTTCAGGGAGAAGCCCTTGAGCAAACG
TTTTCGCAGCATGGAGAAGGCATTTTCACTGGTG
BO08919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10364-PA | 1146 | msb1l-RA | 228..1143 | 934..19 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1366 | CG10364-RA | 325..1240 | 934..19 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19578090..19579005 | 934..19 | 4580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:18:24 has no hits.
BO08919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:58 Download gff for
BO08919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-PA | 228..1146 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:29 Download gff for
BO08919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10364-PA | 228..1146 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:22:48 Download gff for
BO08919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 325..1243 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:37:08 Download gff for
BO08919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 325..1243 | 15..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:37:08 Download gff for
BO08919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19578090..19579008 | 15..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:22:48 Download gff for
BO08919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19578090..19579008 | 15..934 | 99 | | Minus |
BO08919.5prime Sequence
908 bp (824 high quality bases) assembled on 2006-01-10
> BO08919.5prime
GAAGTTATCAGTCGACATGGGAGCAAAGGCAACAAAAATGGAAGGTGAAT
ATCTGCCGGATACGCCGACACTAAACAAAATGCGCCTGGCCAGCGAAAAG
CGAGAACAAATGGAAATGACGACGCCGAATCGAGAGCAAAACAACGCTTT
GCTCGATCCTCGATCACCAAATGGCTGCCGCACGCCTTTAACCTTCTTGC
AGGCGTCAAAACCTCGCGTTGAGGAGGAGGAGCAGCATGTGACCACCAGT
GAAAATGCCTTCTCCATGCTGCGAAAACGTTTGCTCAAGGGCTTCTCCCT
GAACGATCCTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATG
AGGTTCGTTCGCTTAATATGGATGACACATTCGCCGATCTCTTCGTGGAC
ACCAGGGTGGGTACAGCACAGAGAGCAGTGCCTGCATCACCGCCCCAAGT
GGATTTAGAGGAGAGCTGCGATAGCTTCGGCACACCGCCGTCTGCTGCAC
ACAACAATATTTCCCTGGAGATTGTTTCACTGCCCTATGATCAGGAAGAA
ACCTTGCCTTGCGAGCAACAGCTGCTGCCGTATCAGGAGCCGAATCTGGA
GCAGGGCCAGGTGAAAATGGCCACGCCCCCGCCAGAACAGCAGCCCCATG
GTGATCCCCGATCGCCCAGCCTGGGCGTCGATCGCACACCCATCATCTTC
TGCGACGACGAGGAGGAGGAGGCACGCGAGGCCCAGATGCTGGAGCACAT
CCTGGAAACACTGACCCTGAATCTCAGCACTGGCAGCAGCATGGCCTCCT
TTGTCGCTGGCGAGGAGCAGCTACCAGAAGTGCCGTCGAACAAACATTTG
GAGCGAGTGCGTTTGGGTCACAAGCGTCGTGTGCCACCGCGCAAGCCCGC
CAGAGTCA
BO08919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10364-PA | 1146 | msb1l-RA | 1..889 | 17..905 | 4445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:12:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1366 | CG10364-RA | 98..986 | 17..905 | 4445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19578040..19578751 | 194..905 | 3560 | 100 | Plus |
| 2L | 23513712 | 2L | 19577798..19577974 | 17..193 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:12:24 has no hits.
BO08919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:56:59 Download gff for
BO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:31 Download gff for
BO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10364-PA | 1..890 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:36 Download gff for
BO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..987 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:38 Download gff for
BO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..987 | 17..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:38 Download gff for
BO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19577800..19577974 | 19..193 | 100 | -> | Plus |
| 2L | 19578040..19578752 | 194..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:36 Download gff for
BO08919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19577800..19577974 | 19..193 | 100 | -> | Plus |
| arm_2L | 19578040..19578752 | 194..907 | 99 | | Plus |
BO08919.complete Sequence
1177 bp (1177 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631317
> BO08919.complete
GAAGTTATCAGTCGACATGGGAGCAAAGGCAACAAAAATGGAAGGTGAAT
ATCTGCCGGATACGCCGACACTAAACAAAATGCGCCTGGCCAGCGAAAAG
CGAGAACAAATGGAAATGACGACGCCGAATCGAGAGCAAAACAACGCTTT
GCTCGATCCTCGATCACCAAATGGCTGCCGCACGCCTTTAACCTTCTTGC
AGGCGTCAAAACCTCGCGTTGAGGAGGAGGAGCAGCATGTGACCACCAGT
GAAAATGCCTTCTCCATGCTGCGAAAACGTTTGCTCAAGGGCTTCTCCCT
GAACGATCCTCGCTCTCCTCAGCTGAATCGCACTCCACTGGTCCTCGATG
AGGTTCGTTCGCTTAATATGGATGACACATTCGCCGATCTCTTCGTGGAC
ACCAGGGTGGGTACAGCACAGAGAGCAGTGCCTGCATCACCGCCCCAAGT
GGATTTAGAGGAGAGCTGCGATAGCTTCGGCACACCGCCGTCTGCTGCAC
ACAACAATATTTCCCTGGAGATTGTTTCACTGCCCTATGATCAGGAAGAA
ACCTTGCCTTGCGAGCAACAGCTGCTGCCGTATCAGGAGCCGAATCTGGA
GCAGGGCCAGGTGAAAATGGCCACGCCCCCGCCAGAACAGCAGCCCCATG
GTGATCCCCGATCGCCCAGCCTGGGCGTCGATCGCACACCCATCATCTTC
TGCGACGACGAGGAGGAGGAGGCACGCGAGGCCCAGATGCTGGAGCACAT
CCTGGAAACACTGACCCTGAATCTCAGCACTGGCAGCAGCATGGCCTCCT
TTGTCGCTGGCGAGGAGCAGCTACCAGAAGTGCCGTCGAACAAACATTTG
GAGCGAGTGCGTTTGGGTCACAAGCGTCGTGTGCCACCGCGCAAGCCCGC
CAGAGCCAACAAGCCAAAGATCTATGTTGACCAAGAGGAGGGGTCCCCGG
TGACCGGAGGATCCATTACGCCCAAGACAAACAGTACCCCCCTGTCCGCA
CAAAAGCGAACTCCACTCAGTTGCGTTAAGAATAAGCCGCATCTGCGATC
CCGTTCAATGGAAAAGGATTCTAAGAAGAATCAGATTCCGCCCGCGCAGA
GCTTCAACGATCAACTGCGGATAATCTCTGGCACAGAGGGATTCAGCGGA
CCCGTTTACGCAAGCTTTCTAGACCAT
BO08919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1146 | CG10364-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-RA | 1366 | CG10364-RA | 98..1240 | 17..1159 | 5715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19578040..19579005 | 194..1159 | 4830 | 100 | Plus |
| 2L | 23513712 | 2L | 19577798..19577974 | 17..193 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:42 has no hits.
BO08919.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:14 Download gff for
BO08919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 1..1146 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:19 Download gff for
BO08919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 94..1239 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:24 Download gff for
BO08919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..1240 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:15 Download gff for
BO08919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 94..1239 | 17..1163 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:27 Download gff for
BO08919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msb1l-RA | 98..1240 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:27 Download gff for
BO08919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19577798..19577974 | 17..193 | 100 | -> | Plus |
| 2L | 19578040..19579005 | 194..1161 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:24 Download gff for
BO08919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19577798..19577974 | 17..193 | 100 | -> | Plus |
| arm_2L | 19578040..19579005 | 194..1161 | 99 | | Plus |
BO08919.pep Sequence
Translation from 16 to 1177
> BO08919.pep
MGAKATKMEGEYLPDTPTLNKMRLASEKREQMEMTTPNREQNNALLDPRS
PNGCRTPLTFLQASKPRVEEEEQHVTTSENAFSMLRKRLLKGFSLNDPRS
PQLNRTPLVLDEVRSLNMDDTFADLFVDTRVGTAQRAVPASPPQVDLEES
CDSFGTPPSAAHNNISLEIVSLPYDQEETLPCEQQLLPYQEPNLEQGQVK
MATPPPEQQPHGDPRSPSLGVDRTPIIFCDDEEEEAREAQMLEHILETLT
LNLSTGSSMASFVAGEEQLPEVPSNKHLERVRLGHKRRVPPRKPARANKP
KIYVDQEEGSPVTGGSITPKTNSTPLSAQKRTPLSCVKNKPHLRSRSMEK
DSKKNQIPPAQSFNDQLRIISGTEGFSGPVYASFLDH
BO08919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msb1l-PA | 381 | CG10364-PA | 1..381 | 1..381 | 1983 | 100 | Plus |
