Clone BO08924 Report

Search the DGRC for BO08924

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:24
Vector:pDNR-Dual
Associated Gene/Transcriptgrk-RA
Protein status:BO08924.pep: validated full length
Sequenced Size:919

Clone Sequence Records

BO08924.3prime Sequence

915 bp (802 high quality bases) assembled on 2006-01-10

> BO08924.3prime
ATGGTCTAGAAAGCTTGCGCATCTGACAAAAAAGCGCTGCTTATGCAGGT
GTAGTTGCTGCTGCTTCCGGCGATAATCCGGCACATTGCGGAGCATGAAA
ACGGCTGCGAAGAGAACGTAGAGCGACGACAGCATGAGGAGTACGGGAAA
GGAGAAGACGATGTGCGCCATTCGGACCTTCCGCTGCGCTGTTGGAGGCG
AATAGATGTAGTCACCATTCCAGCTCTTGTAGGCGCACCGCTCTCCATCG
TAGTCGTTAACGCAGAGGCAGGAATGGAAGACTGTGTTGTTCACCATCGG
ATGCTGGAAGCAGTGGCCGCCGTTCAGGCAAAAGCTAGTATTGTAAGCTT
CGCTGCAGGGCAGCATCTGAATCTCTGTCTCCTTGTCGTTCGGGCTGGGA
GTCGTGGAGTCAGGCGTGCTGGACGAACTGGGGTCAGGTGGCGGTTCTCC
GGTGTGGGTAACAGTTTCGGGTGTTGTCACTGTCTCGGAATCAGTGATTG
GTGTGCTGCTTTCGCTGGCCAACCAGGTGTCGGTACTGGATCCGAGAATT
ATCCCATCCTGTTCCGGATCCGCAGCAATGGAGTCGTCTGCGTTTGGCAG
TTGGCCGCCCGAGTCCGGATTGGGATCCGTATCGGGATGCAGCTGGTCTG
CCTCCTCCTGGGCCGAGGCCTCCAGTTGCTTGCGCTGCAGCTCCAGGCGA
TTGAGCAACTCAACCGCGGTCTCCTGGATCTGCTGCTGCAGCTCGTGCGC
ATGCTCGTGCATGTGGCTGTGCTGATGCTGCACAATTTTCAGCGTATGCT
CTCGGAGAAGTAAGATTCGGCTCGAACAACAATCTGTGACGGCGACAATT
GTTGAGAGCACGAAAATACTTTGAAAATCCGAGTAAATGGGATTTGCATC
ATGTCGACTGATAAC

BO08924.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17610-PA 888 grk-RA 37..885 867..19 4245 100 Minus
CG17610-PA 888 grk-RA 1..36 902..867 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
grk-RA 1718 CG17610-RA 375..1259 902..19 4400 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8431875..8432497 214..836 3115 100 Plus
2L 23513712 2L 8431545..8431742 19..216 990 100 Plus
2L 23513712 2L 8433013..8433082 834..902 300 98.6 Plus
Blast to na_te.dros performed 2015-02-11 17:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2419 781..731 119 75 Minus

BO08924.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:07 Download gff for BO08924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17610-PA 1..888 16..902 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:41 Download gff for BO08924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17610-PA 1..888 16..902 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:13 Download gff for BO08924.3prime
Subject Subject Range Query Range Percent Splice Strand
grk-RA 371..1267 10..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:51 Download gff for BO08924.3prime
Subject Subject Range Query Range Percent Splice Strand
grk-RA 371..1267 10..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:51 Download gff for BO08924.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8431537..8431741 10..215 98 <- Plus
2L 8431877..8432494 216..833 100 <- Plus
2L 8433013..8433086 834..907 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:13 Download gff for BO08924.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8431537..8431741 10..215 98 <- Plus
arm_2L 8431877..8432494 216..833 100 <- Plus
arm_2L 8433013..8433086 834..907 96   Plus

BO08924.5prime Sequence

895 bp (771 high quality bases) assembled on 2006-01-10

> BO08924.5prime
GAAGTTATCAGTCGACATGATGCAAATCCCATTTACTCGGATTTTCAAAG
TAATTTTCGTGCTCTCAACAATTGTCGCCGTCACAGATTGTTGTTCGAGC
CGAATCTTACTTCTCCGAGAGCATACGCTGAAAATTGTGCAGCATCAGCA
CAGCCACATGCACGAGCATGCGCACGAGCTGCAGCAGCAGATCCAGGAGA
CCGCGGTTGAGTTGCTCAATCGCCTGGAGCTGCAGCGCAAGCAACTGGAG
GCCTCGGCCCAGGAGGAGGCAGACCAGCTGCATCCCGATACGGATCCCAA
TCCGGACTCGGGCGGCCAACTGCCAAACGCAGACGACTCCATTGCTGCGG
ATCCGGAACAGGATGGGATAATTCTCGGATCCAGTACCGACACCTGGTTG
GCCAGCGAAAGCAGCACACCAATCACTGATTCCGAGACAGTGACAACACC
CGAAACTGTTACCCACACCGGAGAACCGCCACCTGACCCCAGTTCGTCCA
GCACGCCTGACTCCACGACTCCCAGCCCGAACGACAAGGAGACAGAGATT
CAGATGCTGCCCTGCAGCGAAGCTTACAATACTAGCTTTTGCCTGAACGG
CGGCCACTGCTTCCAGCATCCGATGGTGAACAACACAGTCTTCCATTCCT
GCCTCTGCGTTAACGACTACGATGGAGAGCGGTGCGCCTACAAGAGCTGG
AATGGTGACTACATCTATTCGCCTCCAACAGCGCAGCGGAAGGTCCGAAT
GGCGCACATCGTCTTCTCCTTTCCCGTACTCCTCATGCTGTCGTCGCTCT
ACGTTCTCTTCGCAGCCGTTTTCATGCTCCGCAATGTGCCGGATTATCGC
CGGAAGCAGCAGCAACTACACCTGCATAAGCAGCGCTTTTTTGTC

BO08924.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17610-PA 888 grk-RA 1..879 17..895 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
grk-RA 1718 CG17610-RA 375..1253 17..895 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8431875..8432497 706..84 3115 100 Minus
2L 23513712 2L 8431551..8431742 895..704 960 100 Minus
2L 23513712 2L 8433013..8433082 86..17 350 100 Minus
Blast to na_te.dros performed 2015-02-11 10:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2419 139..189 119 75 Plus

BO08924.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:07 Download gff for BO08924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17610-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:42 Download gff for BO08924.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17610-PA 1..879 17..895 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:01:10 Download gff for BO08924.5prime
Subject Subject Range Query Range Percent Splice Strand
grk-RA 371..1253 12..895 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:57 Download gff for BO08924.5prime
Subject Subject Range Query Range Percent Splice Strand
grk-RA 371..1253 12..895 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:57 Download gff for BO08924.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8431551..8431741 705..895 100 <- Minus
2L 8431877..8432494 87..704 100 <- Minus
2L 8433013..8433086 12..86 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:01:10 Download gff for BO08924.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8431551..8431741 705..895 100 <- Minus
arm_2L 8431877..8432494 87..704 100 <- Minus
arm_2L 8433013..8433086 12..86 97   Minus

BO08924.complete Sequence

919 bp (919 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631318

> BO08924.complete
GAAGTTATCAGTCGACATGATGCAAATCCCATTTACTCGGATTTTCAAAG
TAATTTTCGTGCTCTCAACAATTGTCGCCGTCACAGATTGTTGTTCGAGC
CGAATCTTACTTCTCCGAGAGCATACGCTGAAAATTGTGCAGCATCAGCA
CAGCCACATGCACGAGCATGCGCACGAGCTGCAGCAGCAGATCCAGGAGA
CCGCGGTTGAGTTGCTCAATCGCCTGGAGCTGCAGCGCAAGCAACTGGAG
GCCTCGGCCCAGGAGGAGGCAGACCAGCTGCATCCCGATACGGATCCCAA
TCCGGACTCGGGCGGCCAACTGCCAAACGCAGACGACTCCATTGCTGCGG
ATCCGGAACAGGATGGGATAATTCTCGGATCCAGTACCGACACCTGGTTG
GCCAGCGAAAGCAGCACACCAATCACTGATTCCGAGACAGTGACAACACC
CGAAACTGTTACCCACACCGGAGAACCGCCACCTGACCCCAGTTCGTCCA
GCACGCCTGACTCCACGACTCCCAGCCCGAACGACAAGGAGACAGAGATT
CAGATGCTGCCCTGCAGCGAAGCTTACAATACTAGCTTTTGCCTGAACGG
CGGCCACTGCTTCCAGCATCCGATGGTGAACAACACAGTCTTCCATTCCT
GCCTCTGCGTTAACGACTACGATGGAGAGCGGTGCGCCTACAAGAGCTGG
AATGGTGACTACATCTATTCGCCTCCAACAGCGCAGCGGAAGGTCCGAAT
GGCGCACATCGTCTTCTCCTTTCCCGTACTCCTCATGCTGTCGTCGCTCT
ACGTTCTCTTCGCAGCCGTTTTCATGCTCCGCAATGTGCCGGATTATCGC
CGGAAGCAGCAGCAACTACACCTGCATAAGCAGCGCTTTTTTGTCAGATG
CGCAAGCTTTCTAGACCAT

BO08924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
grk-RA 888 CG17610-PA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
grk-RA 1718 CG17610-RA 375..1259 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8431875..8432497 706..84 3115 100 Minus
2L 23513712 2L 8431545..8431742 901..704 990 100 Minus
2L 23513712 2L 8433013..8433082 86..17 350 100 Minus
Blast to na_te.dros performed 2014-11-27 10:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2419 139..189 119 75 Plus

BO08924.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:55 Download gff for BO08924.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:52 Download gff for BO08924.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 371..1267 12..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:14:35 Download gff for BO08924.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 375..1259 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:55 Download gff for BO08924.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 371..1267 12..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:52 Download gff for BO08924.complete
Subject Subject Range Query Range Percent Splice Strand
grk-RA 375..1259 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:52 Download gff for BO08924.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8431542..8431741 705..903 99 <- Minus
2L 8431877..8432494 87..704 100 <- Minus
2L 8433013..8433082 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:14:35 Download gff for BO08924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8431542..8431741 705..903 99 <- Minus
arm_2L 8431877..8432494 87..704 100 <- Minus
arm_2L 8433013..8433082 17..86 100   Minus

BO08924.pep Sequence

Translation from 16 to 919

> BO08924.pep
MMQIPFTRIFKVIFVLSTIVAVTDCCSSRILLLREHTLKIVQHQHSHMHE
HAHELQQQIQETAVELLNRLELQRKQLEASAQEEADQLHPDTDPNPDSGG
QLPNADDSIAADPEQDGIILGSSTDTWLASESSTPITDSETVTTPETVTH
TGEPPPDPSSSSTPDSTTPSPNDKETEIQMLPCSEAYNTSFCLNGGHCFQ
HPMVNNTVFHSCLCVNDYDGERCAYKSWNGDYIYSPPTAQRKVRMAHIVF
SFPVLLMLSSLYVLFAAVFMLRNVPDYRRKQQQLHLHKQRFFVRCASFLD
H

BO08924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
grk-PA 295 CG17610-PA 1..295 1..295 1573 100 Plus