Clone Sequence Records
BO08924.3prime Sequence
915 bp (802 high quality bases) assembled on 2006-01-10
> BO08924.3prime
ATGGTCTAGAAAGCTTGCGCATCTGACAAAAAAGCGCTGCTTATGCAGGT
GTAGTTGCTGCTGCTTCCGGCGATAATCCGGCACATTGCGGAGCATGAAA
ACGGCTGCGAAGAGAACGTAGAGCGACGACAGCATGAGGAGTACGGGAAA
GGAGAAGACGATGTGCGCCATTCGGACCTTCCGCTGCGCTGTTGGAGGCG
AATAGATGTAGTCACCATTCCAGCTCTTGTAGGCGCACCGCTCTCCATCG
TAGTCGTTAACGCAGAGGCAGGAATGGAAGACTGTGTTGTTCACCATCGG
ATGCTGGAAGCAGTGGCCGCCGTTCAGGCAAAAGCTAGTATTGTAAGCTT
CGCTGCAGGGCAGCATCTGAATCTCTGTCTCCTTGTCGTTCGGGCTGGGA
GTCGTGGAGTCAGGCGTGCTGGACGAACTGGGGTCAGGTGGCGGTTCTCC
GGTGTGGGTAACAGTTTCGGGTGTTGTCACTGTCTCGGAATCAGTGATTG
GTGTGCTGCTTTCGCTGGCCAACCAGGTGTCGGTACTGGATCCGAGAATT
ATCCCATCCTGTTCCGGATCCGCAGCAATGGAGTCGTCTGCGTTTGGCAG
TTGGCCGCCCGAGTCCGGATTGGGATCCGTATCGGGATGCAGCTGGTCTG
CCTCCTCCTGGGCCGAGGCCTCCAGTTGCTTGCGCTGCAGCTCCAGGCGA
TTGAGCAACTCAACCGCGGTCTCCTGGATCTGCTGCTGCAGCTCGTGCGC
ATGCTCGTGCATGTGGCTGTGCTGATGCTGCACAATTTTCAGCGTATGCT
CTCGGAGAAGTAAGATTCGGCTCGAACAACAATCTGTGACGGCGACAATT
GTTGAGAGCACGAAAATACTTTGAAAATCCGAGTAAATGGGATTTGCATC
ATGTCGACTGATAAC
BO08924.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17610-PA | 888 | grk-RA | 37..885 | 867..19 | 4245 | 100 | Minus |
CG17610-PA | 888 | grk-RA | 1..36 | 902..867 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grk-RA | 1718 | CG17610-RA | 375..1259 | 902..19 | 4400 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:26:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8431875..8432497 | 214..836 | 3115 | 100 | Plus |
2L | 23513712 | 2L | 8431545..8431742 | 19..216 | 990 | 100 | Plus |
2L | 23513712 | 2L | 8433013..8433082 | 834..902 | 300 | 98.6 | Plus |
Blast to na_te.dros performed 2015-02-11 17:26:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2419 | 781..731 | 119 | 75 | Minus |
BO08924.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:07 Download gff for
BO08924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17610-PA | 1..888 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:41 Download gff for
BO08924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17610-PA | 1..888 | 16..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:13 Download gff for
BO08924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 371..1267 | 10..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:51 Download gff for
BO08924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 371..1267 | 10..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:51 Download gff for
BO08924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8431537..8431741 | 10..215 | 98 | <- | Plus |
2L | 8431877..8432494 | 216..833 | 100 | <- | Plus |
2L | 8433013..8433086 | 834..907 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:13 Download gff for
BO08924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8431537..8431741 | 10..215 | 98 | <- | Plus |
arm_2L | 8431877..8432494 | 216..833 | 100 | <- | Plus |
arm_2L | 8433013..8433086 | 834..907 | 96 | | Plus |
BO08924.5prime Sequence
895 bp (771 high quality bases) assembled on 2006-01-10
> BO08924.5prime
GAAGTTATCAGTCGACATGATGCAAATCCCATTTACTCGGATTTTCAAAG
TAATTTTCGTGCTCTCAACAATTGTCGCCGTCACAGATTGTTGTTCGAGC
CGAATCTTACTTCTCCGAGAGCATACGCTGAAAATTGTGCAGCATCAGCA
CAGCCACATGCACGAGCATGCGCACGAGCTGCAGCAGCAGATCCAGGAGA
CCGCGGTTGAGTTGCTCAATCGCCTGGAGCTGCAGCGCAAGCAACTGGAG
GCCTCGGCCCAGGAGGAGGCAGACCAGCTGCATCCCGATACGGATCCCAA
TCCGGACTCGGGCGGCCAACTGCCAAACGCAGACGACTCCATTGCTGCGG
ATCCGGAACAGGATGGGATAATTCTCGGATCCAGTACCGACACCTGGTTG
GCCAGCGAAAGCAGCACACCAATCACTGATTCCGAGACAGTGACAACACC
CGAAACTGTTACCCACACCGGAGAACCGCCACCTGACCCCAGTTCGTCCA
GCACGCCTGACTCCACGACTCCCAGCCCGAACGACAAGGAGACAGAGATT
CAGATGCTGCCCTGCAGCGAAGCTTACAATACTAGCTTTTGCCTGAACGG
CGGCCACTGCTTCCAGCATCCGATGGTGAACAACACAGTCTTCCATTCCT
GCCTCTGCGTTAACGACTACGATGGAGAGCGGTGCGCCTACAAGAGCTGG
AATGGTGACTACATCTATTCGCCTCCAACAGCGCAGCGGAAGGTCCGAAT
GGCGCACATCGTCTTCTCCTTTCCCGTACTCCTCATGCTGTCGTCGCTCT
ACGTTCTCTTCGCAGCCGTTTTCATGCTCCGCAATGTGCCGGATTATCGC
CGGAAGCAGCAGCAACTACACCTGCATAAGCAGCGCTTTTTTGTC
BO08924.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17610-PA | 888 | grk-RA | 1..879 | 17..895 | 4395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grk-RA | 1718 | CG17610-RA | 375..1253 | 17..895 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8431875..8432497 | 706..84 | 3115 | 100 | Minus |
2L | 23513712 | 2L | 8431551..8431742 | 895..704 | 960 | 100 | Minus |
2L | 23513712 | 2L | 8433013..8433082 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 10:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2419 | 139..189 | 119 | 75 | Plus |
BO08924.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:07 Download gff for
BO08924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17610-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:42 Download gff for
BO08924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17610-PA | 1..879 | 17..895 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:01:10 Download gff for
BO08924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 371..1253 | 12..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:57 Download gff for
BO08924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 371..1253 | 12..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:57 Download gff for
BO08924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8431551..8431741 | 705..895 | 100 | <- | Minus |
2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
2L | 8433013..8433086 | 12..86 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:01:10 Download gff for
BO08924.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8431551..8431741 | 705..895 | 100 | <- | Minus |
arm_2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
arm_2L | 8433013..8433086 | 12..86 | 97 | | Minus |
BO08924.complete Sequence
919 bp (919 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631318
> BO08924.complete
GAAGTTATCAGTCGACATGATGCAAATCCCATTTACTCGGATTTTCAAAG
TAATTTTCGTGCTCTCAACAATTGTCGCCGTCACAGATTGTTGTTCGAGC
CGAATCTTACTTCTCCGAGAGCATACGCTGAAAATTGTGCAGCATCAGCA
CAGCCACATGCACGAGCATGCGCACGAGCTGCAGCAGCAGATCCAGGAGA
CCGCGGTTGAGTTGCTCAATCGCCTGGAGCTGCAGCGCAAGCAACTGGAG
GCCTCGGCCCAGGAGGAGGCAGACCAGCTGCATCCCGATACGGATCCCAA
TCCGGACTCGGGCGGCCAACTGCCAAACGCAGACGACTCCATTGCTGCGG
ATCCGGAACAGGATGGGATAATTCTCGGATCCAGTACCGACACCTGGTTG
GCCAGCGAAAGCAGCACACCAATCACTGATTCCGAGACAGTGACAACACC
CGAAACTGTTACCCACACCGGAGAACCGCCACCTGACCCCAGTTCGTCCA
GCACGCCTGACTCCACGACTCCCAGCCCGAACGACAAGGAGACAGAGATT
CAGATGCTGCCCTGCAGCGAAGCTTACAATACTAGCTTTTGCCTGAACGG
CGGCCACTGCTTCCAGCATCCGATGGTGAACAACACAGTCTTCCATTCCT
GCCTCTGCGTTAACGACTACGATGGAGAGCGGTGCGCCTACAAGAGCTGG
AATGGTGACTACATCTATTCGCCTCCAACAGCGCAGCGGAAGGTCCGAAT
GGCGCACATCGTCTTCTCCTTTCCCGTACTCCTCATGCTGTCGTCGCTCT
ACGTTCTCTTCGCAGCCGTTTTCATGCTCCGCAATGTGCCGGATTATCGC
CGGAAGCAGCAGCAACTACACCTGCATAAGCAGCGCTTTTTTGTCAGATG
CGCAAGCTTTCTAGACCAT
BO08924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grk-RA | 888 | CG17610-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grk-RA | 1718 | CG17610-RA | 375..1259 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8431875..8432497 | 706..84 | 3115 | 100 | Minus |
2L | 23513712 | 2L | 8431545..8431742 | 901..704 | 990 | 100 | Minus |
2L | 23513712 | 2L | 8433013..8433082 | 86..17 | 350 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2419 | 139..189 | 119 | 75 | Plus |
BO08924.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:55 Download gff for
BO08924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:52 Download gff for
BO08924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 371..1267 | 12..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:14:35 Download gff for
BO08924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 375..1259 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:55 Download gff for
BO08924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 371..1267 | 12..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:52 Download gff for
BO08924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grk-RA | 375..1259 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:52 Download gff for
BO08924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8431542..8431741 | 705..903 | 99 | <- | Minus |
2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
2L | 8433013..8433082 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:14:35 Download gff for
BO08924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8431542..8431741 | 705..903 | 99 | <- | Minus |
arm_2L | 8431877..8432494 | 87..704 | 100 | <- | Minus |
arm_2L | 8433013..8433082 | 17..86 | 100 | | Minus |
BO08924.pep Sequence
Translation from 16 to 919
> BO08924.pep
MMQIPFTRIFKVIFVLSTIVAVTDCCSSRILLLREHTLKIVQHQHSHMHE
HAHELQQQIQETAVELLNRLELQRKQLEASAQEEADQLHPDTDPNPDSGG
QLPNADDSIAADPEQDGIILGSSTDTWLASESSTPITDSETVTTPETVTH
TGEPPPDPSSSSTPDSTTPSPNDKETEIQMLPCSEAYNTSFCLNGGHCFQ
HPMVNNTVFHSCLCVNDYDGERCAYKSWNGDYIYSPPTAQRKVRMAHIVF
SFPVLLMLSSLYVLFAAVFMLRNVPDYRRKQQQLHLHKQRFFVRCASFLD
H
BO08924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grk-PA | 295 | CG17610-PA | 1..295 | 1..295 | 1573 | 100 | Plus |