Clone Sequence Records
BO08925.3prime Sequence
909 bp (814 high quality bases) assembled on 2006-01-10
> BO08925.3prime
ATGGTCTAGAAAGCTTGCTAGATCGAAATCCTCGTTCTGAGGCGGATTTA
AAACTGATTTTTCAACTTCAGTAAGTAGTCCAATGGCCCGATAGTTATCA
TTTAACATGGCGTACTCCTGTAAGACCTTCACGTAGGCCAAGGCCATATT
TTTACAGTCGATGGATTTCAGTGAATTTTGTAAGGAAGCGACTACTTTGG
GGTCCACATCGTCTTGACTGGTCTCATTTTCCTCCTCAACTGCTGCCGTG
TCGTGAGATTCAACAGTCTCCTTGATCTCATCTTTTAAGGTCGTTTCCTT
TTCCAATGACCCAATTTCCTCTTCATCGGTAAATTCACCATGCTCTATCT
CTATTTTAATTATAGCTTCTTCAGAATCCGTACGCACGCGTACTTCTAAT
TTTTTCGACTTCGCCATTATTGGCGTTTTGTTGGCTTTCTTATTTCCTGC
CGCTTTTGCTTTTTCATCATCAGACCATTTTTTACACACCTTACAAAGTT
TGGATGGACGATTCTTAGTCAGCTTTCTTAGGTATTCACACCTCTTACAG
CCACTTTTAATTAGACCGCTTTGTTGCAAGCTTACAGCTTCCTTCCACTT
GTTGGTTTTTGCATTTAACATATTTCTAGGTTTATTGATCAGCTTTGGTT
TCTCAGTAAGTTGCTCAGTTTTGTCCATCTTGGCCTCCGTCAGCTGGACC
AGGCGATCCCGCCACCTGCGGCAGATTCTCTTGGTCTTGCGCTGTTCCTG
CACCAGTGAGATTGAGCTGCCCACTTGGAACTCGCGCTGTGTGGGATCGG
TCTTTGCCTGGATTTTGTTCCTCATCTCCACCATTTGCTCTATGTATTGT
TTGACCTTGATGATTTCGGCATCCTGCAGGCCAATCAGAATGTCCCTGTA
CTTCCCCAT
BO08925.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3217-PA | 1164 | CkIIalpha-i3-RA | 274..1161 | 906..19 | 4440 | 100 | Minus |
CG3217-PB | 1176 | CkIIalpha-i3-RB | 286..1173 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1540 | CG3217-RC | 598..1485 | 906..19 | 4440 | 100 | Minus |
CkIIalpha-i3-RB | 1289 | CG3217-RB | 290..1177 | 906..19 | 4440 | 100 | Minus |
CkIIalpha-i3-RA | 1275 | CG3217-RA | 333..1220 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 709738..710010 | 634..906 | 1365 | 100 | Plus |
3L | 28110227 | 3L | 708713..708930 | 19..236 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 709332..709495 | 414..577 | 820 | 100 | Plus |
3L | 28110227 | 3L | 709080..709156 | 268..344 | 385 | 100 | Plus |
3L | 28110227 | 3L | 709212..709284 | 343..415 | 365 | 100 | Plus |
3L | 28110227 | 3L | 709557..709613 | 577..633 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:29:00 has no hits.
BO08925.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:08 Download gff for
BO08925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PA | 271..1164 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:44 Download gff for
BO08925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PB | 283..1176 | 16..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:41:16 Download gff for
BO08925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 347..1244 | 11..909 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:47 Download gff for
BO08925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 330..1227 | 11..909 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:47 Download gff for
BO08925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 708706..708928 | 11..234 | 98 | <- | Plus |
3L | 708991..709023 | 235..267 | 100 | <- | Plus |
3L | 709080..709154 | 268..342 | 100 | <- | Plus |
3L | 709212..709283 | 343..414 | 100 | <- | Plus |
3L | 709333..709494 | 415..576 | 100 | <- | Plus |
3L | 709557..709613 | 577..633 | 100 | <- | Plus |
3L | 709738..710013 | 634..909 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:41:16 Download gff for
BO08925.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 708706..708928 | 11..234 | 98 | <- | Plus |
arm_3L | 708991..709023 | 235..267 | 100 | <- | Plus |
arm_3L | 709080..709154 | 268..342 | 100 | <- | Plus |
arm_3L | 709212..709283 | 343..414 | 100 | <- | Plus |
arm_3L | 709333..709494 | 415..576 | 100 | <- | Plus |
arm_3L | 709557..709613 | 577..633 | 100 | <- | Plus |
arm_3L | 709738..710013 | 634..909 | 99 | | Plus |
BO08925.5prime Sequence
874 bp (746 high quality bases) assembled on 2006-01-10
> BO08925.5prime
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAAATTAG
AAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATAAAAATAGAGATA
GAGCATGGTGAATTTACCGATGAA
BO08925.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3217-PA | 1164 | CkIIalpha-i3-RA | 1..858 | 17..874 | 4265 | 99.8 | Plus |
CG3217-PB | 1176 | CkIIalpha-i3-RB | 49..870 | 53..874 | 4085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1540 | CG3217-RC | 325..1182 | 17..874 | 4275 | 99.9 | Plus |
CkIIalpha-i3-RA | 1275 | CG3217-RA | 60..917 | 17..874 | 4275 | 99.9 | Plus |
CkIIalpha-i3-RB | 1289 | CG3217-RB | 53..874 | 53..874 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 709738..710283 | 562..17 | 2730 | 100 | Minus |
3L | 28110227 | 3L | 709332..709495 | 782..619 | 820 | 100 | Minus |
3L | 28110227 | 3L | 709212..709284 | 853..781 | 350 | 98.6 | Minus |
3L | 28110227 | 3L | 709557..709613 | 619..563 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:53:19 has no hits.
BO08925.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:10 Download gff for
BO08925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:45 Download gff for
BO08925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3217-PA | 1..856 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:01:20 Download gff for
BO08925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 77..934 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:34 Download gff for
BO08925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 60..917 | 17..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:34 Download gff for
BO08925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 709134..709154 | 854..874 | 100 | <- | Minus |
3L | 709212..709283 | 782..853 | 98 | <- | Minus |
3L | 709333..709494 | 620..781 | 100 | <- | Minus |
3L | 709557..709613 | 563..619 | 100 | <- | Minus |
3L | 709738..710283 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:01:20 Download gff for
BO08925.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 709134..709154 | 854..874 | 100 | <- | Minus |
arm_3L | 709212..709283 | 782..853 | 98 | <- | Minus |
arm_3L | 709333..709494 | 620..781 | 100 | <- | Minus |
arm_3L | 709557..709613 | 563..619 | 100 | <- | Minus |
arm_3L | 709738..710283 | 17..562 | 100 | | Minus |
BO08925.complete Sequence
1195 bp (1195 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631319
> BO08925.complete
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAAATTAG
AAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAATAGAGATA
GAGCATGGTGAATTTACCGATGAAGAGGAAATTGGGTCATTGGAAAAGGA
AACGACCTTAAAAGATGAGATCAAGGAGACTGTTGAATCTCACGACACGG
CAGCAGTTGAGGAGGAAAATGAGACCAGTCAAGACGATGTGGACCCCAAA
GTAGTCGCTTCCTTACAAAATTCACTGAAATCCATCGACTGTAAAAATAT
GGCCTTGGCCTACGTGAAGGTCTTACAGGAGTACGCCATGTTAAATGATA
ACTATCGGGCCATTGGACTACTTACTGAAGTTGAAAAATCAGTTTTAAAT
CCGCCTCAGAACGAGGATTTCGATCTAGCAAGCTTTCTAGACCAT
BO08925.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1164 | CG3217-PC | 1..1161 | 17..1177 | 5805 | 100 | Plus |
CkIIalpha-i3-RA | 1164 | CG3217-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
CkIIalpha-i3-RB | 1176 | CG3217-PB | 49..1173 | 53..1177 | 5625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-RC | 1540 | CG3217-RC | 325..1485 | 17..1177 | 5805 | 100 | Plus |
CkIIalpha-i3-RA | 1275 | CG3217-RA | 60..1220 | 17..1177 | 5805 | 100 | Plus |
CkIIalpha-i3-RB | 1289 | CG3217-RB | 53..1177 | 53..1177 | 5625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 709738..710283 | 562..17 | 2730 | 100 | Minus |
3L | 28110227 | 3L | 708713..708930 | 1177..960 | 1090 | 100 | Minus |
3L | 28110227 | 3L | 709332..709495 | 782..619 | 820 | 100 | Minus |
3L | 28110227 | 3L | 709080..709156 | 928..852 | 385 | 100 | Minus |
3L | 28110227 | 3L | 709212..709284 | 853..781 | 365 | 100 | Minus |
3L | 28110227 | 3L | 709557..709613 | 619..563 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:44:18 has no hits.
BO08925.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:29 Download gff for
BO08925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 1..1164 | 17..1180 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:35 Download gff for
BO08925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 173..1340 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:35 Download gff for
BO08925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 77..1237 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:29 Download gff for
BO08925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 173..1340 | 17..1185 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:22 Download gff for
BO08925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIalpha-i3-RA | 60..1220 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:22 Download gff for
BO08925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 708710..708928 | 962..1179 | 99 | <- | Minus |
3L | 708991..709023 | 929..961 | 100 | <- | Minus |
3L | 709080..709154 | 854..928 | 100 | <- | Minus |
3L | 709212..709283 | 782..853 | 100 | <- | Minus |
3L | 709333..709494 | 620..781 | 100 | <- | Minus |
3L | 709557..709613 | 563..619 | 100 | <- | Minus |
3L | 709738..710283 | 17..562 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:35 Download gff for
BO08925.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 709333..709494 | 620..781 | 100 | <- | Minus |
arm_3L | 709557..709613 | 563..619 | 100 | <- | Minus |
arm_3L | 708710..708928 | 962..1179 | 99 | <- | Minus |
arm_3L | 708991..709023 | 929..961 | 100 | <- | Minus |
arm_3L | 709080..709154 | 854..928 | 100 | <- | Minus |
arm_3L | 709212..709283 | 782..853 | 100 | <- | Minus |
arm_3L | 709738..710283 | 17..562 | 100 | | Minus |
BO08925.pep Sequence
Translation from 16 to 1195
> BO08925.pep
MEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNAIRYLNDT
YGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGKYRDILIG
LQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLVQEQRKTK
RICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTNKWKEAVS
LQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKAAGNKKAN
KTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLEKETTLKD
EIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCKNMALAYV
KVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDLASFLDH
BO08925.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIalpha-i3-PC | 387 | CG3217-PC | 1..387 | 1..387 | 1962 | 100 | Plus |
CkIIalpha-i3-PA | 387 | CG3217-PA | 1..387 | 1..387 | 1962 | 100 | Plus |
CkIIalpha-i3-PB | 391 | CG3217-PB | 17..391 | 13..387 | 1903 | 100 | Plus |