Clone BO08925 Report

Search the DGRC for BO08925

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIalpha-i3-RA
Protein status:BO08925.pep: validated full length
Sequenced Size:1195

Clone Sequence Records

BO08925.3prime Sequence

909 bp (814 high quality bases) assembled on 2006-01-10

> BO08925.3prime
ATGGTCTAGAAAGCTTGCTAGATCGAAATCCTCGTTCTGAGGCGGATTTA
AAACTGATTTTTCAACTTCAGTAAGTAGTCCAATGGCCCGATAGTTATCA
TTTAACATGGCGTACTCCTGTAAGACCTTCACGTAGGCCAAGGCCATATT
TTTACAGTCGATGGATTTCAGTGAATTTTGTAAGGAAGCGACTACTTTGG
GGTCCACATCGTCTTGACTGGTCTCATTTTCCTCCTCAACTGCTGCCGTG
TCGTGAGATTCAACAGTCTCCTTGATCTCATCTTTTAAGGTCGTTTCCTT
TTCCAATGACCCAATTTCCTCTTCATCGGTAAATTCACCATGCTCTATCT
CTATTTTAATTATAGCTTCTTCAGAATCCGTACGCACGCGTACTTCTAAT
TTTTTCGACTTCGCCATTATTGGCGTTTTGTTGGCTTTCTTATTTCCTGC
CGCTTTTGCTTTTTCATCATCAGACCATTTTTTACACACCTTACAAAGTT
TGGATGGACGATTCTTAGTCAGCTTTCTTAGGTATTCACACCTCTTACAG
CCACTTTTAATTAGACCGCTTTGTTGCAAGCTTACAGCTTCCTTCCACTT
GTTGGTTTTTGCATTTAACATATTTCTAGGTTTATTGATCAGCTTTGGTT
TCTCAGTAAGTTGCTCAGTTTTGTCCATCTTGGCCTCCGTCAGCTGGACC
AGGCGATCCCGCCACCTGCGGCAGATTCTCTTGGTCTTGCGCTGTTCCTG
CACCAGTGAGATTGAGCTGCCCACTTGGAACTCGCGCTGTGTGGGATCGG
TCTTTGCCTGGATTTTGTTCCTCATCTCCACCATTTGCTCTATGTATTGT
TTGACCTTGATGATTTCGGCATCCTGCAGGCCAATCAGAATGTCCCTGTA
CTTCCCCAT

BO08925.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3217-PA 1164 CkIIalpha-i3-RA 274..1161 906..19 4440 100 Minus
CG3217-PB 1176 CkIIalpha-i3-RB 286..1173 906..19 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1540 CG3217-RC 598..1485 906..19 4440 100 Minus
CkIIalpha-i3-RB 1289 CG3217-RB 290..1177 906..19 4440 100 Minus
CkIIalpha-i3-RA 1275 CG3217-RA 333..1220 906..19 4440 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 709738..710010 634..906 1365 100 Plus
3L 28110227 3L 708713..708930 19..236 1090 100 Plus
3L 28110227 3L 709332..709495 414..577 820 100 Plus
3L 28110227 3L 709080..709156 268..344 385 100 Plus
3L 28110227 3L 709212..709284 343..415 365 100 Plus
3L 28110227 3L 709557..709613 577..633 285 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:29:00 has no hits.

BO08925.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:08 Download gff for BO08925.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PA 271..1164 16..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:44 Download gff for BO08925.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PB 283..1176 16..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:41:16 Download gff for BO08925.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 347..1244 11..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:15:47 Download gff for BO08925.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 330..1227 11..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:15:47 Download gff for BO08925.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 708706..708928 11..234 98 <- Plus
3L 708991..709023 235..267 100 <- Plus
3L 709080..709154 268..342 100 <- Plus
3L 709212..709283 343..414 100 <- Plus
3L 709333..709494 415..576 100 <- Plus
3L 709557..709613 577..633 100 <- Plus
3L 709738..710013 634..909 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:41:16 Download gff for BO08925.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 708706..708928 11..234 98 <- Plus
arm_3L 708991..709023 235..267 100 <- Plus
arm_3L 709080..709154 268..342 100 <- Plus
arm_3L 709212..709283 343..414 100 <- Plus
arm_3L 709333..709494 415..576 100 <- Plus
arm_3L 709557..709613 577..633 100 <- Plus
arm_3L 709738..710013 634..909 99   Plus

BO08925.5prime Sequence

874 bp (746 high quality bases) assembled on 2006-01-10

> BO08925.5prime
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAAATTAG
AAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATAAAAATAGAGATA
GAGCATGGTGAATTTACCGATGAA

BO08925.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3217-PA 1164 CkIIalpha-i3-RA 1..858 17..874 4265 99.8 Plus
CG3217-PB 1176 CkIIalpha-i3-RB 49..870 53..874 4085 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1540 CG3217-RC 325..1182 17..874 4275 99.9 Plus
CkIIalpha-i3-RA 1275 CG3217-RA 60..917 17..874 4275 99.9 Plus
CkIIalpha-i3-RB 1289 CG3217-RB 53..874 53..874 4095 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 709738..710283 562..17 2730 100 Minus
3L 28110227 3L 709332..709495 782..619 820 100 Minus
3L 28110227 3L 709212..709284 853..781 350 98.6 Minus
3L 28110227 3L 709557..709613 619..563 285 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:53:19 has no hits.

BO08925.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:10 Download gff for BO08925.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:45 Download gff for BO08925.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3217-PA 1..856 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:01:20 Download gff for BO08925.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 77..934 17..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:34 Download gff for BO08925.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 60..917 17..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:34 Download gff for BO08925.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 709134..709154 854..874 100 <- Minus
3L 709212..709283 782..853 98 <- Minus
3L 709333..709494 620..781 100 <- Minus
3L 709557..709613 563..619 100 <- Minus
3L 709738..710283 17..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:01:20 Download gff for BO08925.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 709134..709154 854..874 100 <- Minus
arm_3L 709212..709283 782..853 98 <- Minus
arm_3L 709333..709494 620..781 100 <- Minus
arm_3L 709557..709613 563..619 100 <- Minus
arm_3L 709738..710283 17..562 100   Minus

BO08925.complete Sequence

1195 bp (1195 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631319

> BO08925.complete
GAAGTTATCAGTCGACATGGAAAAGGAATCCAATTTATCGGACAACTTGC
AGTCCCGGTTATTTGCACTGGGTCCTGCCCCGCCAGGATTTCGTCCACCG
GATGCTACCGCCTTTGCCACAGCGGAGTCAAATCTTCGTAATGCCATCCG
CTACCTTAATGATACCTATGGCGAGCTCGATCAGCTGCGCACTGTCATCC
AGAAGGAGAAGAATAACTCGAAGCGTACGTCCTACAAGGCGCAGTCCATG
ATGCTTGCCATGCAAGTGATACGTTTCAAAGGACTTATTGGGAAGTACAG
GGACATTCTGATTGGCCTGCAGGATGCCGAAATCATCAAGGTCAAACAAT
ACATAGAGCAAATGGTGGAGATGAGGAACAAAATCCAGGCAAAGACCGAT
CCCACACAGCGCGAGTTCCAAGTGGGCAGCTCAATCTCACTGGTGCAGGA
ACAGCGCAAGACCAAGAGAATCTGCCGCAGGTGGCGGGATCGCCTGGTCC
AGCTGACGGAGGCCAAGATGGACAAAACTGAGCAACTTACTGAGAAACCA
AAGCTGATCAATAAACCTAGAAATATGTTAAATGCAAAAACCAACAAGTG
GAAGGAAGCTGTAAGCTTGCAACAAAGCGGTCTAATTAAAAGTGGCTGTA
AGAGGTGTGAATACCTAAGAAAGCTGACTAAGAATCGTCCATCCAAACTT
TGTAAGGTGTGTAAAAAATGGTCTGATGATGAAAAAGCAAAAGCGGCAGG
AAATAAGAAAGCCAACAAAACGCCAATAATGGCGAAGTCGAAAAAATTAG
AAGTACGCGTGCGTACGGATTCTGAAGAAGCTATAATTAAAATAGAGATA
GAGCATGGTGAATTTACCGATGAAGAGGAAATTGGGTCATTGGAAAAGGA
AACGACCTTAAAAGATGAGATCAAGGAGACTGTTGAATCTCACGACACGG
CAGCAGTTGAGGAGGAAAATGAGACCAGTCAAGACGATGTGGACCCCAAA
GTAGTCGCTTCCTTACAAAATTCACTGAAATCCATCGACTGTAAAAATAT
GGCCTTGGCCTACGTGAAGGTCTTACAGGAGTACGCCATGTTAAATGATA
ACTATCGGGCCATTGGACTACTTACTGAAGTTGAAAAATCAGTTTTAAAT
CCGCCTCAGAACGAGGATTTCGATCTAGCAAGCTTTCTAGACCAT

BO08925.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1164 CG3217-PC 1..1161 17..1177 5805 100 Plus
CkIIalpha-i3-RA 1164 CG3217-PA 1..1161 17..1177 5805 100 Plus
CkIIalpha-i3-RB 1176 CG3217-PB 49..1173 53..1177 5625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-RC 1540 CG3217-RC 325..1485 17..1177 5805 100 Plus
CkIIalpha-i3-RA 1275 CG3217-RA 60..1220 17..1177 5805 100 Plus
CkIIalpha-i3-RB 1289 CG3217-RB 53..1177 53..1177 5625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 709738..710283 562..17 2730 100 Minus
3L 28110227 3L 708713..708930 1177..960 1090 100 Minus
3L 28110227 3L 709332..709495 782..619 820 100 Minus
3L 28110227 3L 709080..709156 928..852 385 100 Minus
3L 28110227 3L 709212..709284 853..781 365 100 Minus
3L 28110227 3L 709557..709613 619..563 285 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:44:18 has no hits.

BO08925.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:29 Download gff for BO08925.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 1..1164 17..1180 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:35 Download gff for BO08925.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 173..1340 17..1185 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:35 Download gff for BO08925.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 77..1237 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:29 Download gff for BO08925.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 173..1340 17..1185 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:22 Download gff for BO08925.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIalpha-i3-RA 60..1220 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:22 Download gff for BO08925.complete
Subject Subject Range Query Range Percent Splice Strand
3L 708710..708928 962..1179 99 <- Minus
3L 708991..709023 929..961 100 <- Minus
3L 709080..709154 854..928 100 <- Minus
3L 709212..709283 782..853 100 <- Minus
3L 709333..709494 620..781 100 <- Minus
3L 709557..709613 563..619 100 <- Minus
3L 709738..710283 17..562 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:35 Download gff for BO08925.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 709333..709494 620..781 100 <- Minus
arm_3L 709557..709613 563..619 100 <- Minus
arm_3L 708710..708928 962..1179 99 <- Minus
arm_3L 708991..709023 929..961 100 <- Minus
arm_3L 709080..709154 854..928 100 <- Minus
arm_3L 709212..709283 782..853 100 <- Minus
arm_3L 709738..710283 17..562 100   Minus

BO08925.pep Sequence

Translation from 16 to 1195

> BO08925.pep
MEKESNLSDNLQSRLFALGPAPPGFRPPDATAFATAESNLRNAIRYLNDT
YGELDQLRTVIQKEKNNSKRTSYKAQSMMLAMQVIRFKGLIGKYRDILIG
LQDAEIIKVKQYIEQMVEMRNKIQAKTDPTQREFQVGSSISLVQEQRKTK
RICRRWRDRLVQLTEAKMDKTEQLTEKPKLINKPRNMLNAKTNKWKEAVS
LQQSGLIKSGCKRCEYLRKLTKNRPSKLCKVCKKWSDDEKAKAAGNKKAN
KTPIMAKSKKLEVRVRTDSEEAIIKIEIEHGEFTDEEEIGSLEKETTLKD
EIKETVESHDTAAVEEENETSQDDVDPKVVASLQNSLKSIDCKNMALAYV
KVLQEYAMLNDNYRAIGLLTEVEKSVLNPPQNEDFDLASFLDH

BO08925.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIalpha-i3-PC 387 CG3217-PC 1..387 1..387 1962 100 Plus
CkIIalpha-i3-PA 387 CG3217-PA 1..387 1..387 1962 100 Plus
CkIIalpha-i3-PB 391 CG3217-PB 17..391 13..387 1903 100 Plus