Clone BO08927 Report

Search the DGRC for BO08927

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:27
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)35Bg-RA
Protein status:BO08927.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO08927.3prime Sequence

776 bp (775 high quality bases) assembled on 2006-01-10

> BO08927.3prime
ATGGTCTAGAAAGCTTGCAATGTCGGATTTCAGGAGGTTGTCGGCCAGTT
GCACCTTCTCACCGGGCTTAAAGGCGGGCATGCCCAAATAGGGGCAAGTG
GAGCAGCGGAAGGCGTCGCCGAGATAACAATTTCCACAGCTTGACTTGGC
ATTCTCGGTGGCCTTCTGGCTCTGTTTTTCAGTCTCCAATTCCTCGGCCA
GCCCGCAGGAGCAGTTTTTGCACGCCTTGCGCTTGCCCGTGGTGCTACAG
ACACGCAGACCAGCCGGATCCGGCTTCTGTTTGTCTTCCTCGTCCAGCAG
CTCCTCCTCATCGATCAGTTCCTCATCGTCACCGCTTATCTTCCACACAT
TGACTGCACTGGCGTTCTTCTTTGCGAATGACAACCTGGCTGAGGATCCT
GTCTCGTAGCCAGGCTTCTCGGCGGTCAAAGCATCTGGAGAGTCCTCGCG
ACAGTTTATGAATCCGGATAGCTTGATCTCCTGCAGCAAACTAGCCGCCG
GACCGATGTAGGACACCAAATGCAGTTTGCCACTCGGTTTCAGCATGTGC
AGCAGTTTTACGTAACTGTCGGTCAGCTGGGCGCACTCGATCACAATCAG
GTCGAAACTGGAGTTGGCATAGGAAGAAAACGAAAGGCGGTGCACATTTT
CCAAAGCCACATCGCCGCCAGTGGCCGCCTTTAGTTGCTCCACGCGCTTG
TCCAAGTCGGCGCTGTCCGTCCATATGTATAGGGATTTTTGTAGACCCTT
AAAGTTCTCCATGTCGACTGATAACT

BO08927.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4180-PA 747 l(2)35Bg-RA 1..744 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 2358 CG4180-RA 87..830 762..19 3720 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15038054..15038550 130..626 2485 100 Plus
2L 23513712 2L 15038640..15038775 627..762 680 100 Plus
2L 23513712 2L 15037875..15037985 19..129 555 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:03:41 has no hits.

BO08927.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:10 Download gff for BO08927.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 15..762 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:47 Download gff for BO08927.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 15..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:29 Download gff for BO08927.3prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 11..770 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:11 Download gff for BO08927.3prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 11..770 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:11 Download gff for BO08927.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15037869..15037985 11..129 97 <- Plus
2L 15038054..15038550 130..626 100 <- Plus
2L 15038640..15038783 627..770 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:29 Download gff for BO08927.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15037869..15037985 11..129 97 <- Plus
arm_2L 15038054..15038550 130..626 100 <- Plus
arm_2L 15038640..15038783 627..770 97   Plus

BO08927.5prime Sequence

776 bp (746 high quality bases) assembled on 2006-01-10

> BO08927.5prime
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTGCAAGCTTTCTAGACC

BO08927.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4180-PA 747 l(2)35Bg-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 2358 CG4180-RA 87..830 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15038054..15038550 649..153 2485 100 Minus
2L 23513712 2L 15038640..15038775 152..17 680 100 Minus
2L 23513712 2L 15037875..15037985 760..650 555 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:26:09 has no hits.

BO08927.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:11 Download gff for BO08927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 17..764 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:49 Download gff for BO08927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4180-PA 1..747 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:09 Download gff for BO08927.5prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 9..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:44 Download gff for BO08927.5prime
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 79..836 9..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:44 Download gff for BO08927.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15037869..15037985 650..768 97 <- Minus
2L 15038054..15038550 153..649 100 <- Minus
2L 15038640..15038783 9..152 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:09 Download gff for BO08927.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15038054..15038550 153..649 100 <- Minus
arm_2L 15037869..15037985 650..768 97 <- Minus
arm_2L 15038640..15038783 9..152 97   Minus

BO08927.complete Sequence

778 bp (778 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631320

> BO08927.complete
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTGCAAGCTTTCTAGACCAT

BO08927.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 747 CG4180-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-RA 2358 CG4180-RA 87..830 17..760 3720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15038054..15038550 649..153 2485 100 Minus
2L 23513712 2L 15038640..15038775 152..17 680 100 Minus
2L 23513712 2L 15037875..15037985 760..650 555 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:08:52 has no hits.

BO08927.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:41 Download gff for BO08927.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 1..747 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:10 Download gff for BO08927.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 75..832 9..768 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:44 Download gff for BO08927.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 87..830 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:41 Download gff for BO08927.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bg-RA 75..832 9..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:03 Download gff for BO08927.complete
Subject Subject Range Query Range Percent Splice Strand
CIAPIN1-RA 87..830 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:03 Download gff for BO08927.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15038640..15038775 17..152 100   Minus
2L 15037873..15037985 650..762 98 <- Minus
2L 15038054..15038550 153..649 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:44 Download gff for BO08927.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15037873..15037985 650..762 98 <- Minus
arm_2L 15038054..15038550 153..649 100 <- Minus
arm_2L 15038640..15038775 17..152 100   Minus

BO08927.pep Sequence

Translation from 16 to 778

> BO08927.pep
MENFKGLQKSLYIWTDSADLDKRVEQLKAATGGDVALENVHRLSFSSYAN
SSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSG
FINCREDSPDALTAEKPGYETGSSARLSFAKKNASAVNVWKISGDDEELI
DEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNCSCGLAEELETEKQSQK
ATENAKSSCGNCYLGDAFRCSTCPYLGMPAFKPGEKVQLADNLLKSDIAS
FLDH

BO08927.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
CIAPIN1-PA 248 CG4180-PA 1..248 1..248 1288 100 Plus