Clone Sequence Records
BO08927.3prime Sequence
776 bp (775 high quality bases) assembled on 2006-01-10
> BO08927.3prime
ATGGTCTAGAAAGCTTGCAATGTCGGATTTCAGGAGGTTGTCGGCCAGTT
GCACCTTCTCACCGGGCTTAAAGGCGGGCATGCCCAAATAGGGGCAAGTG
GAGCAGCGGAAGGCGTCGCCGAGATAACAATTTCCACAGCTTGACTTGGC
ATTCTCGGTGGCCTTCTGGCTCTGTTTTTCAGTCTCCAATTCCTCGGCCA
GCCCGCAGGAGCAGTTTTTGCACGCCTTGCGCTTGCCCGTGGTGCTACAG
ACACGCAGACCAGCCGGATCCGGCTTCTGTTTGTCTTCCTCGTCCAGCAG
CTCCTCCTCATCGATCAGTTCCTCATCGTCACCGCTTATCTTCCACACAT
TGACTGCACTGGCGTTCTTCTTTGCGAATGACAACCTGGCTGAGGATCCT
GTCTCGTAGCCAGGCTTCTCGGCGGTCAAAGCATCTGGAGAGTCCTCGCG
ACAGTTTATGAATCCGGATAGCTTGATCTCCTGCAGCAAACTAGCCGCCG
GACCGATGTAGGACACCAAATGCAGTTTGCCACTCGGTTTCAGCATGTGC
AGCAGTTTTACGTAACTGTCGGTCAGCTGGGCGCACTCGATCACAATCAG
GTCGAAACTGGAGTTGGCATAGGAAGAAAACGAAAGGCGGTGCACATTTT
CCAAAGCCACATCGCCGCCAGTGGCCGCCTTTAGTTGCTCCACGCGCTTG
TCCAAGTCGGCGCTGTCCGTCCATATGTATAGGGATTTTTGTAGACCCTT
AAAGTTCTCCATGTCGACTGATAACT
BO08927.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4180-PA | 747 | l(2)35Bg-RA | 1..744 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 2358 | CG4180-RA | 87..830 | 762..19 | 3720 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15038054..15038550 | 130..626 | 2485 | 100 | Plus |
2L | 23513712 | 2L | 15038640..15038775 | 627..762 | 680 | 100 | Plus |
2L | 23513712 | 2L | 15037875..15037985 | 19..129 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:03:41 has no hits.
BO08927.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:10 Download gff for
BO08927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:47 Download gff for
BO08927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:29 Download gff for
BO08927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 11..770 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:11 Download gff for
BO08927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 11..770 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:11 Download gff for
BO08927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15037869..15037985 | 11..129 | 97 | <- | Plus |
2L | 15038054..15038550 | 130..626 | 100 | <- | Plus |
2L | 15038640..15038783 | 627..770 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:29 Download gff for
BO08927.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15037869..15037985 | 11..129 | 97 | <- | Plus |
arm_2L | 15038054..15038550 | 130..626 | 100 | <- | Plus |
arm_2L | 15038640..15038783 | 627..770 | 97 | | Plus |
BO08927.5prime Sequence
776 bp (746 high quality bases) assembled on 2006-01-10
> BO08927.5prime
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTGCAAGCTTTCTAGACC
BO08927.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4180-PA | 747 | l(2)35Bg-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 2358 | CG4180-RA | 87..830 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:26:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15038054..15038550 | 649..153 | 2485 | 100 | Minus |
2L | 23513712 | 2L | 15038640..15038775 | 152..17 | 680 | 100 | Minus |
2L | 23513712 | 2L | 15037875..15037985 | 760..650 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:26:09 has no hits.
BO08927.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:11 Download gff for
BO08927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:49 Download gff for
BO08927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4180-PA | 1..747 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:09 Download gff for
BO08927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:44 Download gff for
BO08927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 79..836 | 9..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:44 Download gff for
BO08927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15037869..15037985 | 650..768 | 97 | <- | Minus |
2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
2L | 15038640..15038783 | 9..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:09 Download gff for
BO08927.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
arm_2L | 15037869..15037985 | 650..768 | 97 | <- | Minus |
arm_2L | 15038640..15038783 | 9..152 | 97 | | Minus |
BO08927.complete Sequence
778 bp (778 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631320
> BO08927.complete
GAAGTTATCAGTCGACATGGAGAACTTTAAGGGTCTACAAAAATCCCTAT
ACATATGGACGGACAGCGCCGACTTGGACAAGCGCGTGGAGCAACTAAAG
GCGGCCACTGGCGGCGATGTGGCTTTGGAAAATGTGCACCGCCTTTCGTT
TTCTTCCTATGCCAACTCCAGTTTCGACCTGATTGTGATCGAGTGCGCCC
AGCTGACCGACAGTTACGTAAAACTGCTGCACATGCTGAAACCGAGTGGC
AAACTGCATTTGGTGTCCTACATCGGTCCGGCGGCTAGTTTGCTGCAGGA
GATCAAGCTATCCGGATTCATAAACTGTCGCGAGGACTCTCCAGATGCTT
TGACCGCCGAGAAGCCTGGCTACGAGACAGGATCCTCAGCCAGGTTGTCA
TTCGCAAAGAAGAACGCCAGTGCAGTCAATGTGTGGAAGATAAGCGGTGA
CGATGAGGAACTGATCGATGAGGAGGAGCTGCTGGACGAGGAAGACAAAC
AGAAGCCGGATCCGGCTGGTCTGCGTGTCTGTAGCACCACGGGCAAGCGC
AAGGCGTGCAAAAACTGCTCCTGCGGGCTGGCCGAGGAATTGGAGACTGA
AAAACAGAGCCAGAAGGCCACCGAGAATGCCAAGTCAAGCTGTGGAAATT
GTTATCTCGGCGACGCCTTCCGCTGCTCCACTTGCCCCTATTTGGGCATG
CCCGCCTTTAAGCCCGGTGAGAAGGTGCAACTGGCCGACAACCTCCTGAA
ATCCGACATTGCAAGCTTTCTAGACCAT
BO08927.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 747 | CG4180-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-RA | 2358 | CG4180-RA | 87..830 | 17..760 | 3720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15038054..15038550 | 649..153 | 2485 | 100 | Minus |
2L | 23513712 | 2L | 15038640..15038775 | 152..17 | 680 | 100 | Minus |
2L | 23513712 | 2L | 15037875..15037985 | 760..650 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:08:52 has no hits.
BO08927.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:41 Download gff for
BO08927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bg-RA | 1..747 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:10 Download gff for
BO08927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bg-RA | 75..832 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:44 Download gff for
BO08927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 87..830 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:41 Download gff for
BO08927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bg-RA | 75..832 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:03 Download gff for
BO08927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CIAPIN1-RA | 87..830 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:03 Download gff for
BO08927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15038640..15038775 | 17..152 | 100 | | Minus |
2L | 15037873..15037985 | 650..762 | 98 | <- | Minus |
2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:44 Download gff for
BO08927.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15037873..15037985 | 650..762 | 98 | <- | Minus |
arm_2L | 15038054..15038550 | 153..649 | 100 | <- | Minus |
arm_2L | 15038640..15038775 | 17..152 | 100 | | Minus |
BO08927.pep Sequence
Translation from 16 to 778
> BO08927.pep
MENFKGLQKSLYIWTDSADLDKRVEQLKAATGGDVALENVHRLSFSSYAN
SSFDLIVIECAQLTDSYVKLLHMLKPSGKLHLVSYIGPAASLLQEIKLSG
FINCREDSPDALTAEKPGYETGSSARLSFAKKNASAVNVWKISGDDEELI
DEEELLDEEDKQKPDPAGLRVCSTTGKRKACKNCSCGLAEELETEKQSQK
ATENAKSSCGNCYLGDAFRCSTCPYLGMPAFKPGEKVQLADNLLKSDIAS
FLDH
BO08927.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CIAPIN1-PA | 248 | CG4180-PA | 1..248 | 1..248 | 1288 | 100 | Plus |