Clone Sequence Records
BO08932.3prime Sequence
886 bp (840 high quality bases) assembled on 2006-01-10
> BO08932.3prime
ATGGTCTAGAAAGCTTGCCTTGGCTTTGTTGGTCTTGAAGCTGACCTGCA
GCACCCGATTGCCCATGGTGTAGCCGTTGAGCGCCCGAATGGCCATGGCC
GCCTCATCGTAGTTGGTCATCGAAACGAAGCCGTAGCCCTTGCACTGATT
CGTTGTGGGATCCTTGACAATCTTTACCGATTGCACAGCTCCAAATGGAC
CAAACAGCTGCCACAGGGCAGCCTCCTCCGTTTCCGGCGCCAAGTTGTAG
ATGAAAATGGGATACGCGCCGCCAGGCCCACTGGCCAGCGTTGTGGCCGC
CGCCGCCGCCGCTCCTAGTCCATTGGGCAGCATTACGTCCAGCATGTCGC
CCGCCATTGGTGAAAACCGGGCCAGACCCTTGTTAACTGGCGTGTGCATG
GCGCCCCCGATGCGTCGCACCAGTTGGGGATTGAGGAAAGCGGGCAGCTG
CGGCTGGATGATCTTACTGGTGCTGCCGGGCGTATTGGAGAATTTTACCA
CTATGGGGTCTGTGCAGCTGGATGGTGTAGTACCGTTCAAGGCAATGATA
GCCCTTGTGGCCTCCTCCCGCTTATCGAATCGAATAAAGCCTACTCCTTT
CGTCTGCGTATCGTTGCCAGCGTTCTGCAGAATGCGCGATGTGATTATTG
CTCCGAATGGTGCGAAGATGGCCTCCAGTTCCTGCTGGGTCATCGTCTTT
GGCAGCCCCGACACATAAAGGTTGGCGCCTTTAATGGCATCGGACGACGG
GCGGGCAAACGACACCTTTATGGTTTTGTTCTGCAGTCGCAGGCCGTTTA
GAACATTAACAGCCTGCTCGGCATCTTGCGGCCGGACATAGTTAACAAAG
CCGTACCCCAGACTTTTGGCCTTGCTGGGCGCCTGC
BO08932.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4262-PA | 1452 | elav-RA | 582..1449 | 886..19 | 4265 | 99.6 | Minus |
CG4262-PB | 1440 | elav-RB | 570..1437 | 886..19 | 4265 | 99.6 | Minus |
CG4396-PA | 1071 | fne-RA | 1016..1055 | 65..26 | 150 | 95 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RC | 2248 | CG4262-RC | 822..1689 | 886..19 | 4295 | 99.7 | Minus |
elav-RB | 2602 | CG4262-RB | 790..1657 | 886..19 | 4295 | 99.7 | Minus |
elav-RA | 2505 | CG4262-RA | 1079..1946 | 886..19 | 4295 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 517795..518662 | 19..886 | 4295 | 99.7 | Plus |
X | 23542271 | X | 12945241..12945474 | 259..26 | 375 | 77.4 | Minus |
2L | 23513712 | 2L | 2963250..2963370 | 146..26 | 275 | 81.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:36:20 has no hits.
BO08932.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:16 Download gff for
BO08932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PA | 582..1452 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:55 Download gff for
BO08932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PB | 570..1440 | 18..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:54:14 Download gff for
BO08932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 1079..1952 | 13..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:20 Download gff for
BO08932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 1079..1952 | 13..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:20 Download gff for
BO08932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 517789..518662 | 13..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:54:14 Download gff for
BO08932.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 411822..412695 | 13..886 | 99 | | Plus |
BO08932.5prime Sequence
880 bp (806 high quality bases) assembled on 2006-01-10
> BO08932.5prime
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAAAACGCTGGCAACGATACGCAG
BO08932.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4262-PA | 1452 | elav-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
CG4262-PB | 1440 | elav-RB | 1..852 | 29..880 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RA | 2505 | CG4262-RA | 498..1361 | 17..880 | 4305 | 99.9 | Plus |
elav-RD | 10506 | CG4262-RD | 498..1361 | 17..880 | 4305 | 99.9 | Plus |
elav-RC | 2248 | CG4262-RC | 242..1104 | 18..880 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 518380..519242 | 880..18 | 4300 | 99.9 | Minus |
X | 23542271 | X | 12942724..12942810 | 452..538 | 195 | 81.6 | Plus |
Blast to na_te.dros performed 2015-02-11 17:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6929 | 136..332 | 264 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6900 | 167..327 | 264 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 167..393 | 252 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6889 | 199..364 | 216 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6912 | 249..449 | 188 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2654 | 64..328 | 169 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2884 | 177..348 | 158 | 60.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1141 | 259..338 | 151 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6939 | 227..449 | 150 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2374 | 224..327 | 139 | 65.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1046..1154 | 222..326 | 138 | 62.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 211..387 | 134 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1586 | 267..338 | 123 | 65.3 | Plus |
BO08932.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:17 Download gff for
BO08932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:56 Download gff for
BO08932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4262-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:53 Download gff for
BO08932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1361 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:28 Download gff for
BO08932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1361 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:28 Download gff for
BO08932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 518380..519252 | 6..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:53 Download gff for
BO08932.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 412413..413285 | 6..880 | 99 | | Minus |
BO08932.complete Sequence
1483 bp (1483 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631322
> BO08932.complete
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAGAACGCTGGCAACGATACGCAGACGAAAGGAGTAGGCTTTAT
TCGATTCGATAAGCGGGAGGAGGCCACAAGGGCTATCATTGCCTTGAACG
GTACTACACCATCCAGCTGCACAGACCCCATAGTGGTAAAATTCTCCAAT
ACGCCCGGCAGCACCAGTAAGATCATCCAGCCGCAGCTGCCCGCTTTCCT
CAATCCCCAACTGGTGCGACGCATCGGGGGCGCCATGCACACGCCAGTTA
ACAAGGGTCTGGCCCGGTTTTCACCAATGGCGGGCGACATGCTGGACGTA
ATGCTGCCCAATGGACTAGGAGCGGCGGCGGCGGCGGCCACAACGCTGGC
CAGTGGGCCTGGCGGCGCGTATCCCATTTTCATCTACAACTTGGCGCCGG
AAACGGAGGAGGCTGCCCTGTGGCAGCTGTTTGGTCCATTTGGAGCTGTG
CAATCGGTAAAGATTGTCAAGGATCCCACAACGAATCAGTGCAAGGGCTA
CGGCTTCGTTTCGATGACCAACTACGATGAGGCGGCCATGGCCATTCGGG
CGCTCAACGGCTACACCATGGGCAATCGGGTGCTGCAGGTCAGCTTCAAG
ACCAACAAAGCCAAGGCAAGCTTTCTAGACCAT
BO08932.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RA | 1452 | CG4262-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
elav-RD | 1452 | CG4262-PD | 1..1449 | 17..1465 | 7245 | 100 | Plus |
elav-RC | 1440 | CG4262-PC | 1..1437 | 29..1465 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-RA | 2505 | CG4262-RA | 498..1946 | 17..1465 | 7245 | 100 | Plus |
elav-RD | 10506 | CG4262-RD | 498..1946 | 17..1465 | 7245 | 100 | Plus |
elav-RC | 2248 | CG4262-RC | 242..1689 | 18..1465 | 7240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 517795..519242 | 1465..18 | 7240 | 100 | Minus |
X | 23542271 | X | 12945241..12945474 | 1225..1458 | 375 | 77.4 | Plus |
2L | 23513712 | 2L | 2963250..2963370 | 1338..1458 | 275 | 81.8 | Plus |
X | 23542271 | X | 12942724..12942810 | 452..538 | 195 | 81.6 | Plus |
Blast to na_te.dros performed 2014-11-27 12:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6929 | 136..332 | 264 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6900 | 167..327 | 264 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2539 | 167..393 | 252 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6889 | 199..364 | 216 | 63.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6912 | 249..449 | 188 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2381..2654 | 64..328 | 169 | 58.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2724..2884 | 177..348 | 158 | 60.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1141 | 259..338 | 151 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6939 | 227..449 | 150 | 56.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2275..2374 | 224..327 | 139 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2473 | 211..387 | 134 | 57.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1586 | 267..338 | 123 | 65.3 | Plus |
BO08932.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:20 Download gff for
BO08932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 1..1452 | 17..1466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:30 Download gff for
BO08932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 498..1952 | 17..1471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:30 Download gff for
BO08932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1946 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:20 Download gff for
BO08932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RA | 498..1952 | 17..1471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:26 Download gff for
BO08932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
elav-RD | 498..1946 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:26 Download gff for
BO08932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 517793..519242 | 17..1467 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:30 Download gff for
BO08932.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 411826..413275 | 17..1467 | 99 | | Minus |
BO08932.pep Sequence
Translation from 16 to 1483
> BO08932.pep
MDFIMANTGAGGGVDTQAQLMQSAAAAAAVAATNAAAAPVQNAAAVAAAA
QLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQ
QQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTN
LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG
QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANL
YVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKR
EEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLV
RRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGG
AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSM
TNYDEAAMAIRALNGYTMGNRVLQVSFKTNKAKASFLDH
BO08932.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
elav-PA | 483 | CG4262-PA | 1..483 | 1..483 | 2404 | 100 | Plus |
elav-PD | 483 | CG4262-PD | 1..483 | 1..483 | 2404 | 100 | Plus |
elav-PC | 479 | CG4262-PC | 1..479 | 5..483 | 2383 | 100 | Plus |
elav-PB | 479 | CG4262-PB | 1..479 | 5..483 | 2383 | 100 | Plus |
fne-PJ | 353 | CG4396-PJ | 10..353 | 130..485 | 1018 | 60.4 | Plus |