Clone BO08932 Report

Search the DGRC for BO08932

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptelav-RA
Protein status:BO08932.pep: validated full length
Sequenced Size:1483

Clone Sequence Records

BO08932.3prime Sequence

886 bp (840 high quality bases) assembled on 2006-01-10

> BO08932.3prime
ATGGTCTAGAAAGCTTGCCTTGGCTTTGTTGGTCTTGAAGCTGACCTGCA
GCACCCGATTGCCCATGGTGTAGCCGTTGAGCGCCCGAATGGCCATGGCC
GCCTCATCGTAGTTGGTCATCGAAACGAAGCCGTAGCCCTTGCACTGATT
CGTTGTGGGATCCTTGACAATCTTTACCGATTGCACAGCTCCAAATGGAC
CAAACAGCTGCCACAGGGCAGCCTCCTCCGTTTCCGGCGCCAAGTTGTAG
ATGAAAATGGGATACGCGCCGCCAGGCCCACTGGCCAGCGTTGTGGCCGC
CGCCGCCGCCGCTCCTAGTCCATTGGGCAGCATTACGTCCAGCATGTCGC
CCGCCATTGGTGAAAACCGGGCCAGACCCTTGTTAACTGGCGTGTGCATG
GCGCCCCCGATGCGTCGCACCAGTTGGGGATTGAGGAAAGCGGGCAGCTG
CGGCTGGATGATCTTACTGGTGCTGCCGGGCGTATTGGAGAATTTTACCA
CTATGGGGTCTGTGCAGCTGGATGGTGTAGTACCGTTCAAGGCAATGATA
GCCCTTGTGGCCTCCTCCCGCTTATCGAATCGAATAAAGCCTACTCCTTT
CGTCTGCGTATCGTTGCCAGCGTTCTGCAGAATGCGCGATGTGATTATTG
CTCCGAATGGTGCGAAGATGGCCTCCAGTTCCTGCTGGGTCATCGTCTTT
GGCAGCCCCGACACATAAAGGTTGGCGCCTTTAATGGCATCGGACGACGG
GCGGGCAAACGACACCTTTATGGTTTTGTTCTGCAGTCGCAGGCCGTTTA
GAACATTAACAGCCTGCTCGGCATCTTGCGGCCGGACATAGTTAACAAAG
CCGTACCCCAGACTTTTGGCCTTGCTGGGCGCCTGC

BO08932.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4262-PA 1452 elav-RA 582..1449 886..19 4265 99.6 Minus
CG4262-PB 1440 elav-RB 570..1437 886..19 4265 99.6 Minus
CG4396-PA 1071 fne-RA 1016..1055 65..26 150 95 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RC 2248 CG4262-RC 822..1689 886..19 4295 99.7 Minus
elav-RB 2602 CG4262-RB 790..1657 886..19 4295 99.7 Minus
elav-RA 2505 CG4262-RA 1079..1946 886..19 4295 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 517795..518662 19..886 4295 99.7 Plus
X 23542271 X 12945241..12945474 259..26 375 77.4 Minus
2L 23513712 2L 2963250..2963370 146..26 275 81.8 Minus
Blast to na_te.dros performed on 2015-02-11 11:36:20 has no hits.

BO08932.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:16 Download gff for BO08932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PA 582..1452 18..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:55 Download gff for BO08932.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PB 570..1440 18..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:54:14 Download gff for BO08932.3prime
Subject Subject Range Query Range Percent Splice Strand
elav-RA 1079..1952 13..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:51:20 Download gff for BO08932.3prime
Subject Subject Range Query Range Percent Splice Strand
elav-RA 1079..1952 13..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:51:20 Download gff for BO08932.3prime
Subject Subject Range Query Range Percent Splice Strand
X 517789..518662 13..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:54:14 Download gff for BO08932.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 411822..412695 13..886 99   Plus

BO08932.5prime Sequence

880 bp (806 high quality bases) assembled on 2006-01-10

> BO08932.5prime
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAAAACGCTGGCAACGATACGCAG

BO08932.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4262-PA 1452 elav-RA 1..864 17..880 4295 99.8 Plus
CG4262-PB 1440 elav-RB 1..852 29..880 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RA 2505 CG4262-RA 498..1361 17..880 4305 99.9 Plus
elav-RD 10506 CG4262-RD 498..1361 17..880 4305 99.9 Plus
elav-RC 2248 CG4262-RC 242..1104 18..880 4300 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 518380..519242 880..18 4300 99.9 Minus
X 23542271 X 12942724..12942810 452..538 195 81.6 Plus
Blast to na_te.dros performed 2015-02-11 17:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6929 136..332 264 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6900 167..327 264 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2539 167..393 252 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6889 199..364 216 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6912 249..449 188 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2654 64..328 169 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2724..2884 177..348 158 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1060..1141 259..338 151 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6939 227..449 150 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2374 224..327 139 65.7 Plus
roo 9092 roo DM_ROO 9092bp 1046..1154 222..326 138 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2473 211..387 134 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1586 267..338 123 65.3 Plus

BO08932.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:17 Download gff for BO08932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:56 Download gff for BO08932.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4262-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:53 Download gff for BO08932.5prime
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1361 17..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:28:28 Download gff for BO08932.5prime
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1361 17..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:28:28 Download gff for BO08932.5prime
Subject Subject Range Query Range Percent Splice Strand
X 518380..519252 6..880 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:53 Download gff for BO08932.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 412413..413285 6..880 99   Minus

BO08932.complete Sequence

1483 bp (1483 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631322

> BO08932.complete
GAAGTTATCAGTCGACATGGACTTTATTATGGCAAATACCGGAGCTGGCG
GCGGAGTAGACACACAGGCACAGCTAATGCAGAGTGCCGCTGCAGCCGCA
GCAGTGGCGGCAACAAACGCGGCCGCCGCTCCCGTACAGAATGCAGCCGC
CGTGGCGGCCGCCGCCCAGCTGCAGCAGCAACAGGTGCAACAGGCAATCC
TGCAGGTGCAGCAGCAGCAGACACAGCAAGCGGTGGCCGCGGCCGCTGCC
GCAGTGACCCAGCAGCTCCAACAGCAACAGCAGGCTGTCGTGGCCCAACA
GGCTGTAGTGCAGCAGCAACAACAGCAGGCGGCGGCAGTGGTGCAACAGG
CGGCGGTCCAACAGGCTGTGGTGCCCCAGCCGCAGCAGGCGCAGCCCAAT
ACGAATGGCAATGCAGGATCGGGATCGCAAAATGGCAGCAACGGCAGCAC
GGAGACGCGCACAAACCTTATTGTCAACTACTTGCCGCAAACAATGACCG
AAGACGAGATCCGTTCGCTCTTCTCCAGCGTCGGCGAGATTGAGTCGGTG
AAGCTGATACGCGACAAGTCGCAGGTCTACATCGATCCTCTCAATCCGCA
GGCGCCCAGCAAGGGCCAAAGTCTGGGCTACGGCTTTGTTAACTATGTCC
GGCCGCAAGATGCCGAGCAGGCTGTTAATGTTCTAAACGGCCTGCGACTG
CAGAACAAAACCATAAAGGTGTCGTTTGCCCGCCCGTCGTCCGATGCCAT
TAAAGGCGCCAACCTTTATGTGTCGGGGCTGCCAAAGACGATGACCCAGC
AGGAACTGGAGGCCATCTTCGCACCATTCGGAGCAATAATCACATCGCGC
ATTCTGCAGAACGCTGGCAACGATACGCAGACGAAAGGAGTAGGCTTTAT
TCGATTCGATAAGCGGGAGGAGGCCACAAGGGCTATCATTGCCTTGAACG
GTACTACACCATCCAGCTGCACAGACCCCATAGTGGTAAAATTCTCCAAT
ACGCCCGGCAGCACCAGTAAGATCATCCAGCCGCAGCTGCCCGCTTTCCT
CAATCCCCAACTGGTGCGACGCATCGGGGGCGCCATGCACACGCCAGTTA
ACAAGGGTCTGGCCCGGTTTTCACCAATGGCGGGCGACATGCTGGACGTA
ATGCTGCCCAATGGACTAGGAGCGGCGGCGGCGGCGGCCACAACGCTGGC
CAGTGGGCCTGGCGGCGCGTATCCCATTTTCATCTACAACTTGGCGCCGG
AAACGGAGGAGGCTGCCCTGTGGCAGCTGTTTGGTCCATTTGGAGCTGTG
CAATCGGTAAAGATTGTCAAGGATCCCACAACGAATCAGTGCAAGGGCTA
CGGCTTCGTTTCGATGACCAACTACGATGAGGCGGCCATGGCCATTCGGG
CGCTCAACGGCTACACCATGGGCAATCGGGTGCTGCAGGTCAGCTTCAAG
ACCAACAAAGCCAAGGCAAGCTTTCTAGACCAT

BO08932.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RA 1452 CG4262-PA 1..1449 17..1465 7245 100 Plus
elav-RD 1452 CG4262-PD 1..1449 17..1465 7245 100 Plus
elav-RC 1440 CG4262-PC 1..1437 29..1465 7185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
elav-RA 2505 CG4262-RA 498..1946 17..1465 7245 100 Plus
elav-RD 10506 CG4262-RD 498..1946 17..1465 7245 100 Plus
elav-RC 2248 CG4262-RC 242..1689 18..1465 7240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 517795..519242 1465..18 7240 100 Minus
X 23542271 X 12945241..12945474 1225..1458 375 77.4 Plus
2L 23513712 2L 2963250..2963370 1338..1458 275 81.8 Plus
X 23542271 X 12942724..12942810 452..538 195 81.6 Plus
Blast to na_te.dros performed 2014-11-27 12:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6733..6929 136..332 264 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6900 167..327 264 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2539 167..393 252 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6889 199..364 216 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6912 249..449 188 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2381..2654 64..328 169 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2724..2884 177..348 158 60.9 Plus
roo 9092 roo DM_ROO 9092bp 1060..1141 259..338 151 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6939 227..449 150 56.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2275..2374 224..327 139 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2473 211..387 134 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1516..1586 267..338 123 65.3 Plus

BO08932.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:20 Download gff for BO08932.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RA 1..1452 17..1466 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:30 Download gff for BO08932.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RA 498..1952 17..1471 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:30 Download gff for BO08932.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1946 17..1467 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:20 Download gff for BO08932.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RA 498..1952 17..1471 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:26 Download gff for BO08932.complete
Subject Subject Range Query Range Percent Splice Strand
elav-RD 498..1946 17..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:26 Download gff for BO08932.complete
Subject Subject Range Query Range Percent Splice Strand
X 517793..519242 17..1467 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:30 Download gff for BO08932.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 411826..413275 17..1467 99   Minus

BO08932.pep Sequence

Translation from 16 to 1483

> BO08932.pep
MDFIMANTGAGGGVDTQAQLMQSAAAAAAVAATNAAAAPVQNAAAVAAAA
QLQQQQVQQAILQVQQQQTQQAVAAAAAAVTQQLQQQQQAVVAQQAVVQQ
QQQQAAAVVQQAAVQQAVVPQPQQAQPNTNGNAGSGSQNGSNGSTETRTN
LIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKG
QSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANL
YVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKR
EEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLV
RRIGGAMHTPVNKGLARFSPMAGDMLDVMLPNGLGAAAAAATTLASGPGG
AYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSM
TNYDEAAMAIRALNGYTMGNRVLQVSFKTNKAKASFLDH

BO08932.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:38
Subject Length Description Subject Range Query Range Score Percent Strand
elav-PA 483 CG4262-PA 1..483 1..483 2404 100 Plus
elav-PD 483 CG4262-PD 1..483 1..483 2404 100 Plus
elav-PC 479 CG4262-PC 1..479 5..483 2383 100 Plus
elav-PB 479 CG4262-PB 1..479 5..483 2383 100 Plus
fne-PJ 353 CG4396-PJ 10..353 130..485 1018 60.4 Plus