Clone BO08933 Report

Search the DGRC for BO08933

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptmei-S332-RA
Protein status:BO08933.pep: validated full length
Sequenced Size:1237

Clone Sequence Records

BO08933.3prime Sequence

969 bp (824 high quality bases) assembled on 2006-01-10

> BO08933.3prime
ATGGTCTAGAAAGCTTGCCTTTTTGGCCTTGGCCTTGCCTTTCGAGCCAT
TGCGCAACTTGTTCTTCAGACTTGGCTCCACCAAACTGGTGGGCCTGCAG
CTTCTACTCGGCCTTGCGCTGTTGTTGCAGAAAGAACTAGACATATCCGT
ATTTTCTGATTTCTTATTAGCCGCAGTTCGGCTTCTAGTTCTTATAGATG
GCATTTCCTCGACGAGAAAGGATTTCGGAGTGCTGGTGCTTCCGGCCATT
TTGCCTATCCCATTGAACAGGCTTCTTCGCGGCGTTAATCCGTTGACATC
AGGAAATATTCCAGACGATTGACTAGGCCTGGTGACTGCCAGTCGTGGGC
ACTGTATGCTTGGCTCCTGTGGAGAATCTTCCACAGCTACGGAAATAGCC
AACCATGATCCCTTCCCAGTCTCTTTTCCCCGACTGAGGGACACTGCTAC
AGGGATATTGGTGTCCACTTCCCGCAGAGCCCGTCCACTGGGCGTGACGG
TGACTTGGGCGTTTGGCGGACTACTTTCAAACGTTGTGTCGCAATAGATG
GCCTCGCATGATGATGACGAGTCTGTGGACTCCCCTTCACTGCCATTTTC
CTCTATAATGCTAAACAGACGATTGTTCTCTTCATTTTGCTCAGTCTGTG
TCTCCTCCACGGGGCTTACTGCTTCGTCGAAATCATCGTCCGAGTCGTCC
TCATCAAACACTAATTCCGCTGGTCTTCGTGGCGGTGGTGTAGGCTTGTT
GGCTCTTCTATCCTCTGGTATCCTAGTGGTCACCACCTCGGACTGCACTT
CTGCGCTGGAGCGGCGACTAGTGGACGATACAGTACTGGTCACTGAGGAA
GATCTTCTTGGCGAGATTGGTCTGGTGGTGCGGGGCAACGCACACGTCCG
TCGCATGTCCTTGCAGATTTCCCTGGAGCTGCGACGCGGGCCGCTTGGTC
TGTTTATCTGAGCTGCGGG

BO08933.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5303-PA 1206 mei-S332-RA 253..1203 969..19 4730 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1594 CG5303-RB 339..1289 969..19 4740 99.9 Minus
mei-S332-RA 1504 CG5303-RA 448..1398 969..19 4740 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22123534..22124261 746..19 3640 100 Minus
2R 25286936 2R 22123250..22123474 969..745 1110 99.6 Minus
Blast to na_te.dros performed on 2015-02-06 11:03:28 has no hits.

BO08933.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:18 Download gff for BO08933.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 253..1206 18..969 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:57 Download gff for BO08933.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 253..1206 18..969 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:28 Download gff for BO08933.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 448..1398 19..969 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:10 Download gff for BO08933.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 448..1398 19..969 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:10 Download gff for BO08933.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22123250..22123474 745..969 99 -> Minus
2R 22123536..22124261 19..744 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:28 Download gff for BO08933.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18010755..18010979 745..969 99 -> Minus
arm_2R 18011041..18011766 19..744 100   Minus

BO08933.5prime Sequence

905 bp (840 high quality bases) assembled on 2006-01-10

> BO08933.5prime
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTAGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGTGGAAGATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGC
AGTCA

BO08933.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5303-PA 1206 mei-S332-RA 1..889 17..905 4420 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1594 CG5303-RB 87..975 17..905 4430 99.9 Plus
mei-S332-RA 1504 CG5303-RA 196..1084 17..905 4430 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22122998..22123474 17..493 2370 99.8 Plus
2R 25286936 2R 22123534..22123947 492..905 2070 100 Plus
Blast to na_te.dros performed on 2015-02-02 10:18:30 has no hits.

BO08933.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:19 Download gff for BO08933.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:59 Download gff for BO08933.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5303-PA 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:01 Download gff for BO08933.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1083 10..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:11 Download gff for BO08933.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1083 10..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:11 Download gff for BO08933.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22122993..22123474 10..493 99 -> Plus
2R 22123536..22123946 494..904 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:01 Download gff for BO08933.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18010498..18010979 10..493 99 -> Plus
arm_2R 18011041..18011451 494..904 100   Plus

BO08933.complete Sequence

1237 bp (1237 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631323

> BO08933.complete
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTAGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGTGGAAGATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGC
AGTCACCAGGCCTAGTCAATCGTCTGGAATATTTCCTGATGTCAACGGAT
TAACGCCGCGAAGAAGCCTGTTCAATGGGATAGGCAAAATGGCCGGAAGC
ACCAGCACTCCGAAATCCTTTCTCGTCGAGGAAATGCCATCTATAAGAAC
TAGAAGCCGAACTGCGGCTAATAAGAAATCAGAAAATACGGATATGTCTA
GTTCTTTCTGCAACAACAGCGCAAGGCCGAGTAGAAGCTGCAGGCCCACC
AGTTTGGTGGAGCCAAGTCTGAAGAACAAGTTGCGCAATGGCTCGAAAGG
CAAGGCCAAGGCCAAAAAGGCAAGCTTTCTAGACCAT

BO08933.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1206 CG5303-PB 1..1203 17..1219 6000 99.9 Plus
mei-S332-RA 1206 CG5303-PA 1..1203 17..1219 6000 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-RB 1594 CG5303-RB 87..1289 17..1219 6000 99.9 Plus
mei-S332-RA 1504 CG5303-RA 196..1398 17..1219 6000 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22123534..22124261 492..1219 3640 100 Plus
2R 25286936 2R 22122998..22123474 17..493 2370 99.8 Plus
Blast to na_te.dros performed on 2014-11-27 20:41:13 has no hits.

BO08933.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:21 Download gff for BO08933.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 1..1206 17..1220 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:31 Download gff for BO08933.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1398 10..1219 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:57 Download gff for BO08933.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 196..1398 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:22 Download gff for BO08933.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 191..1398 10..1219 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:22 Download gff for BO08933.complete
Subject Subject Range Query Range Percent Splice Strand
mei-S332-RA 196..1398 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:22 Download gff for BO08933.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22122998..22123474 17..493 99 -> Plus
2R 22123536..22124261 494..1221 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:57 Download gff for BO08933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18010503..18010979 17..493 99 -> Plus
arm_2R 18011041..18011766 494..1221 99   Plus

BO08933.pep Sequence

Translation from 16 to 1237

> BO08933.pep
MGSKVEQQYKLLNAELMDQVQKQRLEIGEYRKRVISLEREIMDIREEHVL
QNHRQRMENISIVRSLMLSLNVDSDSLAVRQEPAPAAQINRPSGPRRSSR
EICKDMRRTCALARTTRPISPRRSSSVTSTVSSTSRRSSAEVQSEVVTTR
IPEDRRANKPTPPPRRPAELVFDEDDSDDDFDEAVSPVEETQTEQNEENN
RLFSIIEENGSEGESTDSSSSCEAIYCDTTFESSPPNAQVTVTPSGRALR
EVDTNIPVAVSLSRGKETGKGSWLAISVAVEDSPQEPSIQCPRLAVTRPS
QSSGIFPDVNGLTPRRSLFNGIGKMAGSTSTPKSFLVEEMPSIRTRSRTA
ANKKSENTDMSSSFCNNSARPSRSCRPTSLVEPSLKNKLRNGSKGKAKAK
KASFLDH

BO08933.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
mei-S332-PB 401 CG5303-PB 1..401 1..401 2020 100 Plus
mei-S332-PA 401 CG5303-PA 1..401 1..401 2020 100 Plus