Clone Sequence Records
BO08933.3prime Sequence
969 bp (824 high quality bases) assembled on 2006-01-10
> BO08933.3prime
ATGGTCTAGAAAGCTTGCCTTTTTGGCCTTGGCCTTGCCTTTCGAGCCAT
TGCGCAACTTGTTCTTCAGACTTGGCTCCACCAAACTGGTGGGCCTGCAG
CTTCTACTCGGCCTTGCGCTGTTGTTGCAGAAAGAACTAGACATATCCGT
ATTTTCTGATTTCTTATTAGCCGCAGTTCGGCTTCTAGTTCTTATAGATG
GCATTTCCTCGACGAGAAAGGATTTCGGAGTGCTGGTGCTTCCGGCCATT
TTGCCTATCCCATTGAACAGGCTTCTTCGCGGCGTTAATCCGTTGACATC
AGGAAATATTCCAGACGATTGACTAGGCCTGGTGACTGCCAGTCGTGGGC
ACTGTATGCTTGGCTCCTGTGGAGAATCTTCCACAGCTACGGAAATAGCC
AACCATGATCCCTTCCCAGTCTCTTTTCCCCGACTGAGGGACACTGCTAC
AGGGATATTGGTGTCCACTTCCCGCAGAGCCCGTCCACTGGGCGTGACGG
TGACTTGGGCGTTTGGCGGACTACTTTCAAACGTTGTGTCGCAATAGATG
GCCTCGCATGATGATGACGAGTCTGTGGACTCCCCTTCACTGCCATTTTC
CTCTATAATGCTAAACAGACGATTGTTCTCTTCATTTTGCTCAGTCTGTG
TCTCCTCCACGGGGCTTACTGCTTCGTCGAAATCATCGTCCGAGTCGTCC
TCATCAAACACTAATTCCGCTGGTCTTCGTGGCGGTGGTGTAGGCTTGTT
GGCTCTTCTATCCTCTGGTATCCTAGTGGTCACCACCTCGGACTGCACTT
CTGCGCTGGAGCGGCGACTAGTGGACGATACAGTACTGGTCACTGAGGAA
GATCTTCTTGGCGAGATTGGTCTGGTGGTGCGGGGCAACGCACACGTCCG
TCGCATGTCCTTGCAGATTTCCCTGGAGCTGCGACGCGGGCCGCTTGGTC
TGTTTATCTGAGCTGCGGG
BO08933.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5303-PA | 1206 | mei-S332-RA | 253..1203 | 969..19 | 4730 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1594 | CG5303-RB | 339..1289 | 969..19 | 4740 | 99.9 | Minus |
mei-S332-RA | 1504 | CG5303-RA | 448..1398 | 969..19 | 4740 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:03:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22123534..22124261 | 746..19 | 3640 | 100 | Minus |
2R | 25286936 | 2R | 22123250..22123474 | 969..745 | 1110 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:03:28 has no hits.
BO08933.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:18 Download gff for
BO08933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 253..1206 | 18..969 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:57 Download gff for
BO08933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 253..1206 | 18..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:28 Download gff for
BO08933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 448..1398 | 19..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:10 Download gff for
BO08933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 448..1398 | 19..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:10 Download gff for
BO08933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22123250..22123474 | 745..969 | 99 | -> | Minus |
2R | 22123536..22124261 | 19..744 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:28 Download gff for
BO08933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18010755..18010979 | 745..969 | 99 | -> | Minus |
arm_2R | 18011041..18011766 | 19..744 | 100 | | Minus |
BO08933.5prime Sequence
905 bp (840 high quality bases) assembled on 2006-01-10
> BO08933.5prime
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTAGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGTGGAAGATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGC
AGTCA
BO08933.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5303-PA | 1206 | mei-S332-RA | 1..889 | 17..905 | 4420 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1594 | CG5303-RB | 87..975 | 17..905 | 4430 | 99.9 | Plus |
mei-S332-RA | 1504 | CG5303-RA | 196..1084 | 17..905 | 4430 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22122998..22123474 | 17..493 | 2370 | 99.8 | Plus |
2R | 25286936 | 2R | 22123534..22123947 | 492..905 | 2070 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 10:18:30 has no hits.
BO08933.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:19 Download gff for
BO08933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:55:59 Download gff for
BO08933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5303-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:01 Download gff for
BO08933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1083 | 10..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:11 Download gff for
BO08933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1083 | 10..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:11 Download gff for
BO08933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22122993..22123474 | 10..493 | 99 | -> | Plus |
2R | 22123536..22123946 | 494..904 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:01 Download gff for
BO08933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18010498..18010979 | 10..493 | 99 | -> | Plus |
arm_2R | 18011041..18011451 | 494..904 | 100 | | Plus |
BO08933.complete Sequence
1237 bp (1237 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631323
> BO08933.complete
GAAGTTATCAGTCGACATGGGATCCAAAGTGGAGCAGCAGTACAAGCTGC
TGAATGCGGAGCTAATGGACCAAGTGCAGAAGCAGCGCTTAGAGATCGGC
GAGTACAGGAAGCGGGTGATATCTTTGGAGCGAGAGATCATGGACATTCG
GGAGGAGCACGTCCTGCAAAACCATCGCCAGCGCATGGAGAACATCAGTA
TCGTACGCAGCCTGATGCTGAGCCTGAACGTGGACTCCGATTCCCTGGCA
GTGCGTCAGGAGCCCGCTCCCGCAGCTCAGATAAACAGACCAAGCGGCCC
GCGTCGCAGCTCCAGGGAAATCTGCAAGGACATGCGACGGACGTGTGCGT
TGGCCCGCACCACCAGACCAATCTCGCCAAGAAGATCTTCCTCAGTGACC
AGTACTGTATCGTCCACTAGTCGCCGCTCCAGCGCAGAAGTGCAGTCCGA
GGTGGTGACCACTAGGATACCAGAGGATAGAAGAGCCAACAAGCCTACAC
CACCGCCACGAAGACCAGCGGAATTAGTGTTTGATGAGGACGACTCGGAC
GATGATTTCGACGAAGCAGTAAGCCCCGTGGAGGAGACACAGACTGAGCA
AAATGAAGAGAACAATCGTCTGTTTAGCATTATAGAGGAAAATGGCAGTG
AAGGGGAGTCCACAGACTCGTCATCATCATGCGAGGCCATCTATTGCGAC
ACAACGTTTGAAAGTAGTCCGCCAAACGCCCAAGTCACCGTCACGCCCAG
TGGACGGGCTCTGCGGGAAGTGGACACCAATATCCCTGTAGCAGTGTCCC
TCAGTCGGGGAAAAGAGACTGGGAAGGGATCATGGTTGGCTATTTCCGTA
GCTGTGGAAGATTCTCCACAGGAGCCAAGCATACAGTGCCCACGACTGGC
AGTCACCAGGCCTAGTCAATCGTCTGGAATATTTCCTGATGTCAACGGAT
TAACGCCGCGAAGAAGCCTGTTCAATGGGATAGGCAAAATGGCCGGAAGC
ACCAGCACTCCGAAATCCTTTCTCGTCGAGGAAATGCCATCTATAAGAAC
TAGAAGCCGAACTGCGGCTAATAAGAAATCAGAAAATACGGATATGTCTA
GTTCTTTCTGCAACAACAGCGCAAGGCCGAGTAGAAGCTGCAGGCCCACC
AGTTTGGTGGAGCCAAGTCTGAAGAACAAGTTGCGCAATGGCTCGAAAGG
CAAGGCCAAGGCCAAAAAGGCAAGCTTTCTAGACCAT
BO08933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:41:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1206 | CG5303-PB | 1..1203 | 17..1219 | 6000 | 99.9 | Plus |
mei-S332-RA | 1206 | CG5303-PA | 1..1203 | 17..1219 | 6000 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:41:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-RB | 1594 | CG5303-RB | 87..1289 | 17..1219 | 6000 | 99.9 | Plus |
mei-S332-RA | 1504 | CG5303-RA | 196..1398 | 17..1219 | 6000 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22123534..22124261 | 492..1219 | 3640 | 100 | Plus |
2R | 25286936 | 2R | 22122998..22123474 | 17..493 | 2370 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:41:13 has no hits.
BO08933.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:21 Download gff for
BO08933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 1..1206 | 17..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:31 Download gff for
BO08933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1398 | 10..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:57 Download gff for
BO08933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 196..1398 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:22 Download gff for
BO08933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 191..1398 | 10..1219 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:22 Download gff for
BO08933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mei-S332-RA | 196..1398 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:22 Download gff for
BO08933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22122998..22123474 | 17..493 | 99 | -> | Plus |
2R | 22123536..22124261 | 494..1221 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:57 Download gff for
BO08933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18010503..18010979 | 17..493 | 99 | -> | Plus |
arm_2R | 18011041..18011766 | 494..1221 | 99 | | Plus |
BO08933.pep Sequence
Translation from 16 to 1237
> BO08933.pep
MGSKVEQQYKLLNAELMDQVQKQRLEIGEYRKRVISLEREIMDIREEHVL
QNHRQRMENISIVRSLMLSLNVDSDSLAVRQEPAPAAQINRPSGPRRSSR
EICKDMRRTCALARTTRPISPRRSSSVTSTVSSTSRRSSAEVQSEVVTTR
IPEDRRANKPTPPPRRPAELVFDEDDSDDDFDEAVSPVEETQTEQNEENN
RLFSIIEENGSEGESTDSSSSCEAIYCDTTFESSPPNAQVTVTPSGRALR
EVDTNIPVAVSLSRGKETGKGSWLAISVAVEDSPQEPSIQCPRLAVTRPS
QSSGIFPDVNGLTPRRSLFNGIGKMAGSTSTPKSFLVEEMPSIRTRSRTA
ANKKSENTDMSSSFCNNSARPSRSCRPTSLVEPSLKNKLRNGSKGKAKAK
KASFLDH
BO08933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mei-S332-PB | 401 | CG5303-PB | 1..401 | 1..401 | 2020 | 100 | Plus |
mei-S332-PA | 401 | CG5303-PA | 1..401 | 1..401 | 2020 | 100 | Plus |