Clone Sequence Records
BO08934.3prime Sequence
918 bp (849 high quality bases) assembled on 2006-01-10
> BO08934.3prime
ATGGTCTAGAAAGCTTGCTTCACATACATCGTTCATCTCCAGGTCGGCCA
CATGACCAGGAAACAGGTGCGCCTTCTGCATGGGTACGTGCACAAAGTAA
CGATCACAAAACTTGGGGTTCCGCCGAAGCAGGACCTCAGTCAGTATTGT
GCCATAGTCGATCTTCTTGGTAATCAAAAGGCGCCGGCTCTCTCCACTCC
CATAGCTAGCGGAACGCAAGCCAAATTGTCTGGCGATTTGGTGAAGCGTG
GTTCTTTCTTCCTTCGAAAACGTGGGCTCAAACTGCATGTCACGTATATC
GTCCGATCTCACATAGTTTTCTATAAGCCGTCGGTAATCAGCGAAATTTC
CCTTTGGATTTATTAATCCAAGACCATTACGATTGTTCTTTAGCAGATAA
CATACGGGCTCTTCACGTCCCTGCTTCAGTCGCCCTAAGCCACCGCCTGT
CCAGCCCATCAGTCGCATCATGCGATATCCCTTGTTGCTGGGGTCCAATT
TGGGATCGCACGGACTGTCGGCGGACTCATTGGTGACTTTGATGTTGACG
CCGTCCTTGTTTTTTTCCACCTTGATGGTGTCGCGCGTGGCATTCAGCTT
AATACTATAGCAATAGGACTGGATCGTCAAATGCGCCTGCTTATAGGCAG
CTTTCTTGGCCGCCTTAAGGCTCTCCCCCTGTCCTGTCGCTATTACCTCA
TCATTTACTAATAATTCGGCGTATTTTGTATTATCGCTTAATGGCTGATC
TCGGCTGACACGCTCTTCGTACTTGACATTCGCAATGTTGCAGGAGTTTT
GCAGGCAGGCTCGTCCCCCAGCCAAGTACACAATGAGCCGACCGAAACGC
AGATCTTGATAGAGATCGACTGGATCTCCGCCGCCAAACACTGGCGTTTT
ATGTGTGAGCTATCCTCT
BO08934.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-PA | 1320 | CG31301-RA | 448..1317 | 888..19 | 4350 | 100 | Minus |
CG31301-PA | 1320 | CG31301-RA | 417..449 | 918..886 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1520 | CG31301-RA | 517..1417 | 918..19 | 4480 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15346831..15347152 | 918..598 | 1560 | 99.7 | Minus |
3R | 32079331 | 3R | 15347690..15347909 | 238..19 | 1100 | 100 | Minus |
3R | 32079331 | 3R | 15347207..15347405 | 599..401 | 995 | 100 | Minus |
3R | 32079331 | 3R | 15347463..15347625 | 401..239 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:30:26 has no hits.
BO08934.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:20 Download gff for
BO08934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 417..1320 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:00 Download gff for
BO08934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 417..1320 | 18..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:52:50 Download gff for
BO08934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 517..1422 | 13..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:30 Download gff for
BO08934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 517..1422 | 13..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:30 Download gff for
BO08934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15346831..15347152 | 598..918 | 99 | -> | Minus |
3R | 15347209..15347405 | 401..597 | 100 | -> | Minus |
3R | 15347464..15347625 | 239..400 | 100 | -> | Minus |
3R | 15347690..15347914 | 13..238 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:52:50 Download gff for
BO08934.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11173412..11173636 | 13..238 | 98 | | Minus |
arm_3R | 11172553..11172874 | 598..918 | 99 | -> | Minus |
arm_3R | 11172931..11173127 | 401..597 | 100 | -> | Minus |
arm_3R | 11173186..11173347 | 239..400 | 100 | -> | Minus |
BO08934.5prime Sequence
910 bp (870 high quality bases) assembled on 2006-01-10
> BO08934.5prime
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGG
BO08934.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-PA | 1320 | CG31301-RA | 1..893 | 17..909 | 4465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1520 | CG31301-RA | 101..993 | 17..909 | 4465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15346305..15346684 | 17..396 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 15346792..15347152 | 394..754 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 15347207..15347363 | 753..909 | 785 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:34:34 has no hits.
BO08934.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:21 Download gff for
BO08934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:01 Download gff for
BO08934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-PA | 1..893 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:28 Download gff for
BO08934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 95..993 | 11..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:35 Download gff for
BO08934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 95..993 | 11..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:35 Download gff for
BO08934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15346794..15347152 | 396..754 | 100 | -> | Plus |
3R | 15347209..15347363 | 755..910 | 99 | | Plus |
3R | 15346299..15346683 | 11..395 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:28 Download gff for
BO08934.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11172021..11172405 | 11..395 | 99 | -> | Plus |
arm_3R | 11172516..11172874 | 396..754 | 100 | -> | Plus |
arm_3R | 11172931..11173085 | 755..910 | 99 | | Plus |
BO08934.complete Sequence
1351 bp (1351 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631324
> BO08934.complete
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGTGGCTTAGGGCGACTGAAGCAGGGACGTGAAGAGCCCGTAT
GTTATCTGCTAAAGAACAATCGTAATGGTCTTGGATTAATAAATCCAAAG
GGAAATTTCGCTGATTACCGACGGCTTATAGAAAACTATGTGAGATCGGA
CGATATACGTGACATGCAGTTTGAGCCCACGTTTTCGAAGGAAGAAAGAA
CCACGCTTCACCAAATCGCCAGACAATTTGGCTTGCGTTCCGCTAGCTAT
GGGAGTGGAGAGAGCCGGCGCCTTTTGATTACCAAGAAGATCGACTATGG
CACAATACTGACTGAGGTCCTGCTTCGGCGGAACCCCAAGTTTTGTGATC
GTTACTTTGTGCACGTACCCATGCAGAAGGCGCACCTGTTTCCTGGTCAT
GTGGCCGACCTGGAGATGAACGATGTATGTGAAGCAAGCTTTCTAGACCA
T
BO08934.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1320 | CG31301-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-RA | 1520 | CG31301-RA | 101..1417 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15346305..15346684 | 17..396 | 1900 | 100 | Plus |
3R | 32079331 | 3R | 15346792..15347152 | 394..754 | 1805 | 100 | Plus |
3R | 32079331 | 3R | 15347690..15347909 | 1114..1333 | 1100 | 100 | Plus |
3R | 32079331 | 3R | 15347207..15347405 | 753..951 | 995 | 100 | Plus |
3R | 32079331 | 3R | 15347463..15347625 | 951..1113 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:56:32 has no hits.
BO08934.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:23 Download gff for
BO08934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 1..1320 | 17..1334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:33 Download gff for
BO08934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 69..1396 | 11..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:59 Download gff for
BO08934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 101..1417 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:23 Download gff for
BO08934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 69..1396 | 11..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:16 Download gff for
BO08934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31301-RA | 101..1417 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:16 Download gff for
BO08934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15347464..15347625 | 952..1113 | 100 | -> | Plus |
3R | 15347690..15347909 | 1114..1335 | 99 | | Plus |
3R | 15346305..15346683 | 17..395 | 100 | -> | Plus |
3R | 15346794..15347152 | 396..754 | 100 | -> | Plus |
3R | 15347209..15347405 | 755..951 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:59 Download gff for
BO08934.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11172027..11172405 | 17..395 | 100 | -> | Plus |
arm_3R | 11172516..11172874 | 396..754 | 100 | -> | Plus |
arm_3R | 11172931..11173127 | 755..951 | 100 | -> | Plus |
arm_3R | 11173186..11173347 | 952..1113 | 100 | -> | Plus |
arm_3R | 11173412..11173631 | 1114..1335 | 99 | | Plus |
BO08934.pep Sequence
Translation from 16 to 1351
> BO08934.pep
MSVQQSKPKQKKVKVKKQDDAGYGSGEFSLDWDVDSYKTEYESDEHWDLR
RSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYPSATMLLVAELSKEIAA
DFRQKREQRLKRTFVSASDAAEQRAKGRRAPPLPSTSSPEDSSHIKRQCF
GGGDPVDLYQDLRFGRLIVYLAGGRACLQNSCNIANVKYEERVSRDQPLS
DNTKYAELLVNDEVIATGQGESLKAAKKAAYKQAHLTIQSYCYSIKLNAT
RDTIKVEKNKDGVNIKVTNESADSPCDPKLDPSNKGYRMMRLMGWTGGGL
GRLKQGREEPVCYLLKNNRNGLGLINPKGNFADYRRLIENYVRSDDIRDM
QFEPTFSKEERTTLHQIARQFGLRSASYGSGESRRLLITKKIDYGTILTE
VLLRRNPKFCDRYFVHVPMQKAHLFPGHVADLEMNDVCEASFLDH
BO08934.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31301-PA | 439 | CG31301-PA | 1..439 | 1..439 | 2303 | 100 | Plus |