Clone BO08934 Report

Search the DGRC for BO08934

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG31301-RA
Protein status:BO08934.pep: validated full length
Sequenced Size:1351

Clone Sequence Records

BO08934.3prime Sequence

918 bp (849 high quality bases) assembled on 2006-01-10

> BO08934.3prime
ATGGTCTAGAAAGCTTGCTTCACATACATCGTTCATCTCCAGGTCGGCCA
CATGACCAGGAAACAGGTGCGCCTTCTGCATGGGTACGTGCACAAAGTAA
CGATCACAAAACTTGGGGTTCCGCCGAAGCAGGACCTCAGTCAGTATTGT
GCCATAGTCGATCTTCTTGGTAATCAAAAGGCGCCGGCTCTCTCCACTCC
CATAGCTAGCGGAACGCAAGCCAAATTGTCTGGCGATTTGGTGAAGCGTG
GTTCTTTCTTCCTTCGAAAACGTGGGCTCAAACTGCATGTCACGTATATC
GTCCGATCTCACATAGTTTTCTATAAGCCGTCGGTAATCAGCGAAATTTC
CCTTTGGATTTATTAATCCAAGACCATTACGATTGTTCTTTAGCAGATAA
CATACGGGCTCTTCACGTCCCTGCTTCAGTCGCCCTAAGCCACCGCCTGT
CCAGCCCATCAGTCGCATCATGCGATATCCCTTGTTGCTGGGGTCCAATT
TGGGATCGCACGGACTGTCGGCGGACTCATTGGTGACTTTGATGTTGACG
CCGTCCTTGTTTTTTTCCACCTTGATGGTGTCGCGCGTGGCATTCAGCTT
AATACTATAGCAATAGGACTGGATCGTCAAATGCGCCTGCTTATAGGCAG
CTTTCTTGGCCGCCTTAAGGCTCTCCCCCTGTCCTGTCGCTATTACCTCA
TCATTTACTAATAATTCGGCGTATTTTGTATTATCGCTTAATGGCTGATC
TCGGCTGACACGCTCTTCGTACTTGACATTCGCAATGTTGCAGGAGTTTT
GCAGGCAGGCTCGTCCCCCAGCCAAGTACACAATGAGCCGACCGAAACGC
AGATCTTGATAGAGATCGACTGGATCTCCGCCGCCAAACACTGGCGTTTT
ATGTGTGAGCTATCCTCT

BO08934.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 1320 CG31301-RA 448..1317 888..19 4350 100 Minus
CG31301-PA 1320 CG31301-RA 417..449 918..886 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:30:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1520 CG31301-RA 517..1417 918..19 4480 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:30:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15346831..15347152 918..598 1560 99.7 Minus
3R 32079331 3R 15347690..15347909 238..19 1100 100 Minus
3R 32079331 3R 15347207..15347405 599..401 995 100 Minus
3R 32079331 3R 15347463..15347625 401..239 815 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:30:26 has no hits.

BO08934.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:20 Download gff for BO08934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 417..1320 18..918 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:00 Download gff for BO08934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 417..1320 18..918 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:52:50 Download gff for BO08934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 517..1422 13..918 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:42:30 Download gff for BO08934.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 517..1422 13..918 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:42:30 Download gff for BO08934.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15346831..15347152 598..918 99 -> Minus
3R 15347209..15347405 401..597 100 -> Minus
3R 15347464..15347625 239..400 100 -> Minus
3R 15347690..15347914 13..238 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:52:50 Download gff for BO08934.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11173412..11173636 13..238 98   Minus
arm_3R 11172553..11172874 598..918 99 -> Minus
arm_3R 11172931..11173127 401..597 100 -> Minus
arm_3R 11173186..11173347 239..400 100 -> Minus

BO08934.5prime Sequence

910 bp (870 high quality bases) assembled on 2006-01-10

> BO08934.5prime
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGG

BO08934.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 1320 CG31301-RA 1..893 17..909 4465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1520 CG31301-RA 101..993 17..909 4465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15346305..15346684 17..396 1900 100 Plus
3R 32079331 3R 15346792..15347152 394..754 1805 100 Plus
3R 32079331 3R 15347207..15347363 753..909 785 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:34:34 has no hits.

BO08934.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:21 Download gff for BO08934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 1..893 17..910 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:01 Download gff for BO08934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-PA 1..893 17..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:28 Download gff for BO08934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 95..993 11..910 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:35 Download gff for BO08934.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 95..993 11..910 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:35 Download gff for BO08934.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15346794..15347152 396..754 100 -> Plus
3R 15347209..15347363 755..910 99   Plus
3R 15346299..15346683 11..395 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:28 Download gff for BO08934.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11172021..11172405 11..395 99 -> Plus
arm_3R 11172516..11172874 396..754 100 -> Plus
arm_3R 11172931..11173085 755..910 99   Plus

BO08934.complete Sequence

1351 bp (1351 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631324

> BO08934.complete
GAAGTTATCAGTCGACATGTCCGTTCAACAATCCAAGCCAAAGCAGAAGA
AAGTCAAAGTTAAAAAACAGGATGATGCCGGCTATGGATCCGGGGAATTT
TCCTTGGACTGGGATGTAGACAGCTACAAGACGGAATACGAAAGTGATGA
GCACTGGGATCTGCGACGCAGCTTCATGCTGGCCCACAAGGATCGTTTTG
AGGAGGACCGGCTGGTGTGCCTGGCCCAAACGTTCGTCAACATGGAGTTC
ATGGGCTGCAAGTATCCAAGCGCGACGATGCTTTTGGTGGCCGAGTTGTC
CAAGGAAATCGCAGCGGATTTCCGTCAGAAACGGGAACAGCGCCTGAAGA
GAACATTTGTCTCGGCGTCGGATGCGGCGGAGCAGCGCGCCAAAGGGCGC
CGGGCTCCACCCCTTCCCTCGACGAGCTCCCCAGAGGATAGCTCACACAT
AAAACGCCAGTGTTTTGGCGGCGGAGATCCAGTCGATCTCTATCAAGATC
TGCGTTTCGGTCGGCTCATTGTGTACTTGGCTGGGGGACGAGCCTGCCTG
CAAAACTCCTGCAACATTGCGAATGTCAAGTACGAAGAGCGTGTCAGCCG
AGATCAGCCATTAAGCGATAATACAAAATACGCCGAATTATTAGTAAATG
ATGAGGTAATAGCGACAGGACAGGGGGAGAGCCTTAAGGCGGCCAAGAAA
GCTGCCTATAAGCAGGCGCATTTGACGATCCAGTCCTATTGCTATAGTAT
TAAGCTGAATGCCACGCGCGACACCATCAAGGTGGAAAAAAACAAGGACG
GCGTCAACATCAAAGTCACCAATGAGTCCGCCGACAGTCCGTGCGATCCC
AAATTGGACCCCAGCAACAAGGGATATCGCATGATGCGACTGATGGGCTG
GACAGGCGGTGGCTTAGGGCGACTGAAGCAGGGACGTGAAGAGCCCGTAT
GTTATCTGCTAAAGAACAATCGTAATGGTCTTGGATTAATAAATCCAAAG
GGAAATTTCGCTGATTACCGACGGCTTATAGAAAACTATGTGAGATCGGA
CGATATACGTGACATGCAGTTTGAGCCCACGTTTTCGAAGGAAGAAAGAA
CCACGCTTCACCAAATCGCCAGACAATTTGGCTTGCGTTCCGCTAGCTAT
GGGAGTGGAGAGAGCCGGCGCCTTTTGATTACCAAGAAGATCGACTATGG
CACAATACTGACTGAGGTCCTGCTTCGGCGGAACCCCAAGTTTTGTGATC
GTTACTTTGTGCACGTACCCATGCAGAAGGCGCACCTGTTTCCTGGTCAT
GTGGCCGACCTGGAGATGAACGATGTATGTGAAGCAAGCTTTCTAGACCA
T

BO08934.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1320 CG31301-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-RA 1520 CG31301-RA 101..1417 17..1333 6585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:56:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15346305..15346684 17..396 1900 100 Plus
3R 32079331 3R 15346792..15347152 394..754 1805 100 Plus
3R 32079331 3R 15347690..15347909 1114..1333 1100 100 Plus
3R 32079331 3R 15347207..15347405 753..951 995 100 Plus
3R 32079331 3R 15347463..15347625 951..1113 815 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:56:32 has no hits.

BO08934.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:23 Download gff for BO08934.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 1..1320 17..1334 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:33 Download gff for BO08934.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 69..1396 11..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:59 Download gff for BO08934.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 101..1417 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:23 Download gff for BO08934.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 69..1396 11..1339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:16 Download gff for BO08934.complete
Subject Subject Range Query Range Percent Splice Strand
CG31301-RA 101..1417 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:16 Download gff for BO08934.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15347464..15347625 952..1113 100 -> Plus
3R 15347690..15347909 1114..1335 99   Plus
3R 15346305..15346683 17..395 100 -> Plus
3R 15346794..15347152 396..754 100 -> Plus
3R 15347209..15347405 755..951 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:59 Download gff for BO08934.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11172027..11172405 17..395 100 -> Plus
arm_3R 11172516..11172874 396..754 100 -> Plus
arm_3R 11172931..11173127 755..951 100 -> Plus
arm_3R 11173186..11173347 952..1113 100 -> Plus
arm_3R 11173412..11173631 1114..1335 99   Plus

BO08934.pep Sequence

Translation from 16 to 1351

> BO08934.pep
MSVQQSKPKQKKVKVKKQDDAGYGSGEFSLDWDVDSYKTEYESDEHWDLR
RSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYPSATMLLVAELSKEIAA
DFRQKREQRLKRTFVSASDAAEQRAKGRRAPPLPSTSSPEDSSHIKRQCF
GGGDPVDLYQDLRFGRLIVYLAGGRACLQNSCNIANVKYEERVSRDQPLS
DNTKYAELLVNDEVIATGQGESLKAAKKAAYKQAHLTIQSYCYSIKLNAT
RDTIKVEKNKDGVNIKVTNESADSPCDPKLDPSNKGYRMMRLMGWTGGGL
GRLKQGREEPVCYLLKNNRNGLGLINPKGNFADYRRLIENYVRSDDIRDM
QFEPTFSKEERTTLHQIARQFGLRSASYGSGESRRLLITKKIDYGTILTE
VLLRRNPKFCDRYFVHVPMQKAHLFPGHVADLEMNDVCEASFLDH

BO08934.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31301-PA 439 CG31301-PA 1..439 1..439 2303 100 Plus