Clone BO08935 Report

Search the DGRC for BO08935

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG3704-RA
Protein status:BO08935.pep: validated full length
Sequenced Size:1180

Clone Sequence Records

BO08935.3prime Sequence

897 bp (746 high quality bases) assembled on 2006-01-10

> BO08935.3prime
ATGGTCTAGAAAGCTTGCCGGCTGAGCCTGTTCCTGTTCCTGCTGCAGTT
TGTCCCGCTTGCTCTGCTGGGCAGTCAGGTGGTTCTGCACGAAGCTGTGG
AAGTTTTGTTCTTCGGCGGTGCCCTTCGCGTCCTCCTCCATCTCCTCCTC
GTCTTCGATTTCCGCCGACTCGGGCACCAGACTAGGTGCCATTAGGAAAA
TGCTGTTTCCAGTGTGCGGCGGTGGGTCCTGAAGCGACAATCCCAGGGGA
ACGGCATGGCCGTCCTCTTCCACATGATCCACTGGCTTTGGACCCGTCGC
ACTCTCCGCCAGTCGCTCTTGGCGCTTCTTTTCGTAAACAGGCTTGTAGT
CCGTCTCGTACTCGTCCACGCTTTCGAGAATCTTCGTCAGTAGCTGGGTG
AAGCCTACGCCTGTCTTGGCCGAGACGCCGCACGTTCTTAGATTCTCGTA
GAAGGTGTCCAGGGTGAGCGACATGGTGCGCGTGAGGTTGCTCACGAAGC
TGTGCTCCTCCTCCTGGGCCTCCTGGAAGGCCTCGAAGTCTGTCATCCAA
TCCATCACAAATCCGCAGTCCTTTAGGTCGATCTTGTTCAGCGCCACAAG
GAAGGGCAAACGGGTCTTGTACAGGATGGAGCAGGCGTACAGCATGTTGG
ACATGAAGGTGGTAGGGCAAGCACTGCGCTCCACATCCATTACATAGACC
ACAATGGTGGGAAACATGGTGGCCAGTCCCTCGGTTATGATGCTCCCGGA
AGCCGACCAGTTAAACACCTCGATCTGTCCGGGCGTGTCGATCACACACC
ACTTGTGTCCGCGCTCGCCAGCGCGACGCACTAGCTCCGCAAACTGTGCC
ATTTTGGTGGTGAACATATTGAGCGCGGTCACAATGCCACCGTTGGG

BO08935.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 1149 CG3704-RA 268..1146 897..19 4395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1515 CG3704-RA 340..1218 897..19 4395 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 939732..940088 228..584 1785 100 Plus
X 23542271 X 940152..940466 583..897 1575 100 Plus
X 23542271 X 939467..939681 19..233 1075 100 Plus
Blast to na_te.dros performed 2015-02-10 19:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4451..4489 356..318 123 79.5 Minus

BO08935.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:22 Download gff for BO08935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 268..1149 15..897 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:02 Download gff for BO08935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 268..1149 15..897 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:09 Download gff for BO08935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 340..1221 15..897 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:06 Download gff for BO08935.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 340..1221 15..897 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:06 Download gff for BO08935.3prime
Subject Subject Range Query Range Percent Splice Strand
X 939463..939676 15..228 99 <- Plus
X 939733..940086 229..582 100 <- Plus
X 940152..940466 583..897 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:09 Download gff for BO08935.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 833496..833709 15..228 99 <- Plus
arm_X 833766..834119 229..582 100 <- Plus
arm_X 834185..834499 583..897 100   Plus

BO08935.5prime Sequence

926 bp (803 high quality bases) assembled on 2006-01-10

> BO08935.5prime
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCNAGAGCGACTGGCGGAGAGTGCGACGGGTCCCAAGCCAGT
GGATCATGTGGAAGAGGACGGCCATG

BO08935.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 1149 CG3704-RA 1..910 17..926 4506 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1515 CG3704-RA 73..982 17..926 4524 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 940152..940733 598..17 2910 100 Minus
X 23542271 X 939759..940088 926..597 1624 99.4 Minus
Blast to na_te.dros performed 2015-02-10 03:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4451..4489 825..863 125 79.5 Plus

BO08935.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:23 Download gff for BO08935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:04 Download gff for BO08935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-PA 1..910 17..926 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:37 Download gff for BO08935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 67..982 10..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:20 Download gff for BO08935.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 67..982 10..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:20 Download gff for BO08935.5prime
Subject Subject Range Query Range Percent Splice Strand
X 939759..940086 599..926 99 <- Minus
X 940152..940739 10..598 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:37 Download gff for BO08935.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 833792..834119 599..926 99 <- Minus
arm_X 834185..834772 10..598 99   Minus

BO08935.complete Sequence

1180 bp (1180 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631325

> BO08935.complete
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCAAGAGCGACTGGCGGAGAGTGCGACGGGTCCAAAGCCAGT
GGATCATGTGGAAGAGGACGGCCATGCCGTTCCCCTGGGATTGTCGCTTC
AGGACCCACCGCCGCACACTGGAAACAGCATTTTCCTAATGGCACCTAGT
CTGGTGCCCGAGTCGGCGGAAATCGAAGACGAGGAGGAGATGGAGGAGGA
CGCGAAGGGCACCGCCGAAGAACAAAACTTCCACAGCTTCGTGCAGAACC
ACCTGACTGCCCAGCAGAGCAAGCGGGACAAACTGCAGCAGGAACAGGAA
CAGGCTCAGCCGGCAAGCTTTCTAGACCAT

BO08935.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1149 CG3704-PA 1..1146 17..1162 5730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-RA 1515 CG3704-RA 73..1218 17..1162 5730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 940152..940733 598..17 2910 100 Minus
X 23542271 X 939732..940088 953..597 1785 100 Minus
X 23542271 X 939467..939681 1162..948 1075 100 Minus
Blast to na_te.dros performed 2014-11-27 13:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
flea 5034 flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). 4451..4489 825..863 123 79.5 Plus

BO08935.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:17 Download gff for BO08935.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 1..1149 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:38 Download gff for BO08935.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 63..1217 10..1166 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:25 Download gff for BO08935.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 73..1218 17..1164 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:17 Download gff for BO08935.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 63..1217 10..1166 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:41 Download gff for BO08935.complete
Subject Subject Range Query Range Percent Splice Strand
CG3704-RA 73..1218 17..1164 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:41 Download gff for BO08935.complete
Subject Subject Range Query Range Percent Splice Strand
X 939465..939676 953..1164 99 <- Minus
X 939733..940086 599..952 100 <- Minus
X 940152..940733 17..598 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:25 Download gff for BO08935.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 833498..833709 953..1164 99 <- Minus
arm_X 833766..834119 599..952 100 <- Minus
arm_X 834185..834766 17..598 100   Minus

BO08935.pep Sequence

Translation from 16 to 1180

> BO08935.pep
MAEGVESIKLEALSLSEGIRESPVCILVLGMAGSGKTTFTQKLIQHAQEK
FNPYVVNLDPACREVPYAAHVDIRDTVNYREVMKQYQLGPNGGIVTALNM
FTTKMAQFAELVRRAGERGHKWCVIDTPGQIEVFNWSASGSIITEGLATM
FPTIVVYVMDVERSACPTTFMSNMLYACSILYKTRLPFLVALNKIDLKDC
GFVMDWMTDFEAFQEAQEEEHSFVSNLTRTMSLTLDTFYENLRTCGVSAK
TGVGFTQLLTKILESVDEYETDYKPVYEKKRQERLAESATGPKPVDHVEE
DGHAVPLGLSLQDPPPHTGNSIFLMAPSLVPESAEIEDEEEMEEDAKGTA
EEQNFHSFVQNHLTAQQSKRDKLQQEQEQAQPASFLDH

BO08935.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3704-PA 382 CG3704-PA 1..382 1..382 1985 100 Plus
CG2656-PA 283 CG2656-PA 6..211 27..228 215 30.7 Plus
CG10222-PB 307 CG10222-PB 19..208 27..209 173 25.3 Plus
CG10222-PA 307 CG10222-PA 19..208 27..209 173 25.3 Plus