Clone Sequence Records
BO08935.3prime Sequence
897 bp (746 high quality bases) assembled on 2006-01-10
> BO08935.3prime
ATGGTCTAGAAAGCTTGCCGGCTGAGCCTGTTCCTGTTCCTGCTGCAGTT
TGTCCCGCTTGCTCTGCTGGGCAGTCAGGTGGTTCTGCACGAAGCTGTGG
AAGTTTTGTTCTTCGGCGGTGCCCTTCGCGTCCTCCTCCATCTCCTCCTC
GTCTTCGATTTCCGCCGACTCGGGCACCAGACTAGGTGCCATTAGGAAAA
TGCTGTTTCCAGTGTGCGGCGGTGGGTCCTGAAGCGACAATCCCAGGGGA
ACGGCATGGCCGTCCTCTTCCACATGATCCACTGGCTTTGGACCCGTCGC
ACTCTCCGCCAGTCGCTCTTGGCGCTTCTTTTCGTAAACAGGCTTGTAGT
CCGTCTCGTACTCGTCCACGCTTTCGAGAATCTTCGTCAGTAGCTGGGTG
AAGCCTACGCCTGTCTTGGCCGAGACGCCGCACGTTCTTAGATTCTCGTA
GAAGGTGTCCAGGGTGAGCGACATGGTGCGCGTGAGGTTGCTCACGAAGC
TGTGCTCCTCCTCCTGGGCCTCCTGGAAGGCCTCGAAGTCTGTCATCCAA
TCCATCACAAATCCGCAGTCCTTTAGGTCGATCTTGTTCAGCGCCACAAG
GAAGGGCAAACGGGTCTTGTACAGGATGGAGCAGGCGTACAGCATGTTGG
ACATGAAGGTGGTAGGGCAAGCACTGCGCTCCACATCCATTACATAGACC
ACAATGGTGGGAAACATGGTGGCCAGTCCCTCGGTTATGATGCTCCCGGA
AGCCGACCAGTTAAACACCTCGATCTGTCCGGGCGTGTCGATCACACACC
ACTTGTGTCCGCGCTCGCCAGCGCGACGCACTAGCTCCGCAAACTGTGCC
ATTTTGGTGGTGAACATATTGAGCGCGGTCACAATGCCACCGTTGGG
BO08935.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-PA | 1149 | CG3704-RA | 268..1146 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1515 | CG3704-RA | 340..1218 | 897..19 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 939732..940088 | 228..584 | 1785 | 100 | Plus |
X | 23542271 | X | 940152..940466 | 583..897 | 1575 | 100 | Plus |
X | 23542271 | X | 939467..939681 | 19..233 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 19:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4451..4489 | 356..318 | 123 | 79.5 | Minus |
BO08935.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:22 Download gff for
BO08935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 268..1149 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:02 Download gff for
BO08935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 268..1149 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:00:09 Download gff for
BO08935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 340..1221 | 15..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:32:06 Download gff for
BO08935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 340..1221 | 15..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:32:06 Download gff for
BO08935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 939463..939676 | 15..228 | 99 | <- | Plus |
X | 939733..940086 | 229..582 | 100 | <- | Plus |
X | 940152..940466 | 583..897 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:00:09 Download gff for
BO08935.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 833496..833709 | 15..228 | 99 | <- | Plus |
arm_X | 833766..834119 | 229..582 | 100 | <- | Plus |
arm_X | 834185..834499 | 583..897 | 100 | | Plus |
BO08935.5prime Sequence
926 bp (803 high quality bases) assembled on 2006-01-10
> BO08935.5prime
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCNAGAGCGACTGGCGGAGAGTGCGACGGGTCCCAAGCCAGT
GGATCATGTGGAAGAGGACGGCCATG
BO08935.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-PA | 1149 | CG3704-RA | 1..910 | 17..926 | 4506 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:12:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1515 | CG3704-RA | 73..982 | 17..926 | 4524 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 940152..940733 | 598..17 | 2910 | 100 | Minus |
X | 23542271 | X | 939759..940088 | 926..597 | 1624 | 99.4 | Minus |
Blast to na_te.dros performed 2015-02-10 03:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4451..4489 | 825..863 | 125 | 79.5 | Plus |
BO08935.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:23 Download gff for
BO08935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:04 Download gff for
BO08935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-PA | 1..910 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:37 Download gff for
BO08935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 67..982 | 10..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:20 Download gff for
BO08935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 67..982 | 10..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:20 Download gff for
BO08935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 939759..940086 | 599..926 | 99 | <- | Minus |
X | 940152..940739 | 10..598 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:37 Download gff for
BO08935.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 833792..834119 | 599..926 | 99 | <- | Minus |
arm_X | 834185..834772 | 10..598 | 99 | | Minus |
BO08935.complete Sequence
1180 bp (1180 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631325
> BO08935.complete
GAAGTTATCAGTCGACATGGCAGAGGGAGTGGAGAGCATCAAGCTGGAGG
CGCTGTCGCTGAGCGAGGGAATCCGGGAGTCGCCCGTGTGCATACTGGTG
CTGGGAATGGCCGGCAGCGGGAAGACCACGTTCACACAGAAGCTCATCCA
GCACGCCCAGGAGAAGTTCAATCCGTACGTGGTCAACCTGGATCCGGCGT
GCAGGGAAGTACCGTACGCGGCGCACGTGGACATACGGGACACGGTCAAC
TACCGGGAGGTGATGAAGCAGTACCAACTGGGTCCCAACGGTGGCATTGT
GACCGCGCTCAATATGTTCACCACCAAAATGGCACAGTTTGCGGAGCTAG
TGCGTCGCGCTGGCGAGCGCGGACACAAGTGGTGTGTGATCGACACGCCC
GGACAGATCGAGGTGTTTAACTGGTCGGCTTCCGGGAGCATCATAACCGA
GGGACTGGCCACCATGTTTCCCACCATTGTGGTCTATGTAATGGATGTGG
AGCGCAGTGCTTGCCCTACCACCTTCATGTCCAACATGCTGTACGCCTGC
TCCATCCTGTACAAGACCCGTTTGCCCTTCCTTGTGGCGCTGAACAAGAT
CGACCTAAAGGACTGCGGATTTGTGATGGATTGGATGACAGACTTCGAGG
CCTTCCAGGAGGCCCAGGAGGAGGAGCACAGCTTCGTGAGCAACCTCACG
CGCACCATGTCGCTCACCCTGGACACCTTCTACGAGAATCTAAGAACGTG
CGGCGTCTCGGCCAAGACAGGCGTAGGCTTCACCCAGCTACTGACGAAGA
TTCTCGAAAGCGTGGACGAGTACGAGACGGACTACAAGCCTGTTTACGAA
AAGAAGCGCCAAGAGCGACTGGCGGAGAGTGCGACGGGTCCAAAGCCAGT
GGATCATGTGGAAGAGGACGGCCATGCCGTTCCCCTGGGATTGTCGCTTC
AGGACCCACCGCCGCACACTGGAAACAGCATTTTCCTAATGGCACCTAGT
CTGGTGCCCGAGTCGGCGGAAATCGAAGACGAGGAGGAGATGGAGGAGGA
CGCGAAGGGCACCGCCGAAGAACAAAACTTCCACAGCTTCGTGCAGAACC
ACCTGACTGCCCAGCAGAGCAAGCGGGACAAACTGCAGCAGGAACAGGAA
CAGGCTCAGCCGGCAAGCTTTCTAGACCAT
BO08935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1149 | CG3704-PA | 1..1146 | 17..1162 | 5730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-RA | 1515 | CG3704-RA | 73..1218 | 17..1162 | 5730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 940152..940733 | 598..17 | 2910 | 100 | Minus |
X | 23542271 | X | 939732..940088 | 953..597 | 1785 | 100 | Minus |
X | 23542271 | X | 939467..939681 | 1162..948 | 1075 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 4451..4489 | 825..863 | 123 | 79.5 | Plus |
BO08935.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:17 Download gff for
BO08935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 1..1149 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:38 Download gff for
BO08935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 63..1217 | 10..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:25 Download gff for
BO08935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 73..1218 | 17..1164 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:17 Download gff for
BO08935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 63..1217 | 10..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:41 Download gff for
BO08935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3704-RA | 73..1218 | 17..1164 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:41 Download gff for
BO08935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 939465..939676 | 953..1164 | 99 | <- | Minus |
X | 939733..940086 | 599..952 | 100 | <- | Minus |
X | 940152..940733 | 17..598 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:25 Download gff for
BO08935.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 833498..833709 | 953..1164 | 99 | <- | Minus |
arm_X | 833766..834119 | 599..952 | 100 | <- | Minus |
arm_X | 834185..834766 | 17..598 | 100 | | Minus |
BO08935.pep Sequence
Translation from 16 to 1180
> BO08935.pep
MAEGVESIKLEALSLSEGIRESPVCILVLGMAGSGKTTFTQKLIQHAQEK
FNPYVVNLDPACREVPYAAHVDIRDTVNYREVMKQYQLGPNGGIVTALNM
FTTKMAQFAELVRRAGERGHKWCVIDTPGQIEVFNWSASGSIITEGLATM
FPTIVVYVMDVERSACPTTFMSNMLYACSILYKTRLPFLVALNKIDLKDC
GFVMDWMTDFEAFQEAQEEEHSFVSNLTRTMSLTLDTFYENLRTCGVSAK
TGVGFTQLLTKILESVDEYETDYKPVYEKKRQERLAESATGPKPVDHVEE
DGHAVPLGLSLQDPPPHTGNSIFLMAPSLVPESAEIEDEEEMEEDAKGTA
EEQNFHSFVQNHLTAQQSKRDKLQQEQEQAQPASFLDH
BO08935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3704-PA | 382 | CG3704-PA | 1..382 | 1..382 | 1985 | 100 | Plus |
CG2656-PA | 283 | CG2656-PA | 6..211 | 27..228 | 215 | 30.7 | Plus |
CG10222-PB | 307 | CG10222-PB | 19..208 | 27..209 | 173 | 25.3 | Plus |
CG10222-PA | 307 | CG10222-PA | 19..208 | 27..209 | 173 | 25.3 | Plus |