Clone Sequence Records
BO08938.3prime Sequence
767 bp (685 high quality bases) assembled on 2006-01-10
> BO08938.3prime
ATGGTCTAGAAAGCTTGCATCCTCGTCGTCAAGTGTGAGTACTTTTGTCT
GGAAGCGCATTCGTTTGGTATTCTTTACTACACCGTTGGTGAGCAGGTTG
GCCCCTCGATCCGGACAGGGCAGTTCATTCCATAGGCGCTTTACGCGCAC
CACAGCCTCAGTATTGAAGTCGTATCTCTTGGGGGCGGAAGATGGTTCAG
GTACAGACGCAATGGTTGGGAGTTTGCGTAGTTTGACAACTGGCTGCAGC
TGGCGGCAGCTGCTATAGCTGCTCACACTGGCCTTATCGTCGACATCCTC
GGCGGACTCCGCGTTTCGTTCACATCCATTGCCGGCCAGCGAGCAGCCTC
GCTTCTGCGGAGATTCTTCTTCGGATTTGGCTGCACGTAAGTTTTCCTGT
TTCTCGTACTCATTCAAAGTGGGTGGTGCTGCAGCGCATATTTTACCCGG
CTCCTCGGGATGACAGCCCATGTCCTGACCTTTCAGCCAATTATCGTATC
GCTCTGGCTGGAAACGGCGTACGAAGGTCTCCATCGAGATCTTAACCATG
TCGCTGCGGCATCGGCAAATACTAGCCCGCTTGCCGTACTCGATCCAACG
CTTCGACGCAAAGTTGGTCGACTCGGCGCCGTTGAAGCCATGATTGAACC
CGGCATGGTAGCCGAAGGGAAATGTAATCATGATTTCGCCCGCTTCCTGC
GTGATCTTGTTGTAAGGTATGTTGTGCTGGCGCAGCACCTTCGGACTGAT
CATGGTCATCTTATGGC
BO08938.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15835-PA | 1488 | CG15835-RA | 737..1485 | 767..19 | 3745 | 100 | Minus |
| CG33182-PA | 1359 | CG33182-RA | 769..869 | 708..608 | 230 | 89.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RA | 2022 | CG15835-RA | 809..1557 | 767..19 | 3745 | 100 | Minus |
| Kdm4A-RB | 2004 | CG15835-RB | 809..1539 | 767..19 | 3465 | 97.6 | Minus |
| Kdm4B-RE | 5718 | CG33182-RE | 1378..1556 | 708..530 | 445 | 83.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923669..7924044 | 392..767 | 1880 | 100 | Plus |
| 2R | 25286936 | 2R | 7923240..7923612 | 19..391 | 1865 | 100 | Plus |
| 2R | 25286936 | 2R | 13186747..13186924 | 530..707 | 440 | 83.1 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:02:52 has no hits.
BO08938.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:25 Download gff for
BO08938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 737..1488 | 16..767 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:08 Download gff for
BO08938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 737..1488 | 16..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:21 Download gff for
BO08938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 809..1565 | 11..767 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:05 Download gff for
BO08938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 809..1565 | 11..767 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:05 Download gff for
BO08938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7923232..7923612 | 11..391 | 98 | <- | Plus |
| 2R | 7923669..7924044 | 392..767 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:21 Download gff for
BO08938.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3810737..3811117 | 11..391 | 98 | <- | Plus |
| arm_2R | 3811174..3811549 | 392..767 | 100 | | Plus |
BO08938.5prime Sequence
883 bp (800 high quality bases) assembled on 2006-01-10
> BO08938.5prime
GAAGTTATCAGTCGACATGTCCACGAGATCTTCATTCGCCGATGAAGAGC
AGAACAAAGTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTT
CAAAATTTTTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTT
AGCCGGCTTGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGT
CGGGCTACGACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGC
CAAGTAGTCACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCA
GCGCCGGCAGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGC
TGCACCAGACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTAC
TGGAAGAACATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGG
ATCGCTGAGTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACA
CCATATTAAACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTA
AACACGGCTTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCA
TACCGAGGACATGGATCTGTATTCTATTAACTATCTGCATTTTGGAGCAC
CCAAAACCTGGTACGCCATTCCGCCGGCGTATGGCAGACGTCTGGAGAAG
CTGGCGAACGAAACCTTCTCTGAGAACTACCAGGAATGCAATGCCTATCT
TCGCCATAAGATGACCATGATCAGTCCGAAGGTGCTGCGCCAGCACAACA
TACCTTACAACAAGATCACGCAGGAAGCGGGCGAAATCATGATTACATTT
CCCTTCGGCTACCATGCCGGGTTCAATCATGGC
BO08938.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15835-PA | 1488 | CG15835-RA | 1..867 | 17..883 | 4335 | 100 | Plus |
| CG33182-PA | 1359 | CG33182-RA | 769..836 | 812..879 | 190 | 91.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RB | 2004 | CG15835-RB | 73..939 | 17..883 | 4335 | 100 | Plus |
| Kdm4A-RA | 2022 | CG15835-RA | 73..939 | 17..883 | 4335 | 100 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 1117..1449 | 551..883 | 315 | 73.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923914..7924533 | 883..264 | 3100 | 100 | Minus |
| 2R | 25286936 | 2R | 7924761..7924916 | 172..17 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7924597..7924689 | 265..173 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 13186854..13186924 | 883..813 | 250 | 90.1 | Minus |
| 2R | 25286936 | 2R | 13187132..13187244 | 663..551 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:31:07 has no hits.
BO08938.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:26 Download gff for
BO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:09 Download gff for
BO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-PA | 1..867 | 17..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:40:48 Download gff for
BO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 64..939 | 8..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:03 Download gff for
BO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 64..939 | 8..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:03 Download gff for
BO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7923914..7924532 | 265..883 | 100 | <- | Minus |
| 2R | 7924598..7924689 | 173..264 | 100 | <- | Minus |
| 2R | 7924761..7924925 | 8..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:40:48 Download gff for
BO08938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3811419..3812037 | 265..883 | 100 | <- | Minus |
| arm_2R | 3812103..3812194 | 173..264 | 100 | <- | Minus |
| arm_2R | 3812266..3812430 | 8..172 | 97 | | Minus |
BO08938.complete Sequence
1519 bp (1519 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631326
> BO08938.complete
GAAGTTATCAGTCGACATGTCCACGAGATCTTCATTCGCCGATGAAGAGC
AGAACAAAGTGCCCCGTATCATGACCTTCCGTCCCAGCTACGAGGAGTTT
CAAAATTTTTCCGCCTACATTGAGTACATTGAGTCTCGGGGAGCACACTT
AGCCGGCTTGGCCAAAATCCAACCACCTGCGGAATGGGTGCCCCGAAAGT
CGGGCTACGACATAGACAACATCAACATGACCATTCCAGCGCCGATTTGC
CAAGTAGTCACTGGGGCGCACGGGGTGTACCAGCAAATCAACATCCAGCA
GCGCCGGCAGATGACCTTGCGCCAATTCATGGAGAAGGCCAACTCGGAGC
TGCACCAGACACCGAGGCACTTCGACTACGACGATCTGGAGCGCAAGTAC
TGGAAGAACATCACCTACATATCGCCACTGTATGCAGCCGATGTCAAGGG
ATCGCTGAGTGATGAAGACCTTGACGTTTGGAACATTGGACGCTTGGACA
CCATATTAAACTTGGTCAACACTGACTACAACATAATCATCGATGGGGTA
AACACGGCTTACCTCTACTTTGGCATGTGGAAGAGCTCTTTTGCCTGGCA
TACCGAGGACATGGATCTGTATTCTATTAACTATCTGCATTTTGGAGCAC
CCAAAACCTGGTACGCCATTCCGCCGGCGTATGGCAGACGTCTGGAGAAG
CTGGCGAACGAAACCTTCTCTGAGAACTACCAGGAATGCAATGCCTATCT
TCGCCATAAGATGACCATGATCAGTCCGAAGGTGCTGCGCCAGCACAACA
TACCTTACAACAAGATCACGCAGGAAGCGGGCGAAATCATGATTACATTT
CCCTTCGGCTACCATGCCGGGTTCAATCATGGCTTCAACGGCGCCGAGTC
GACCAACTTTGCGTCGAAGCGTTGGATCGAGTACGGCAAGCGGGCTAGTA
TTTGCCGATGCCGCAGCGACATGGTTAAGATCTCGATGGAGACCTTCGTA
CGCCGTTTCCAGCCAGAGCGATACGATAATTGGCTGAAAGGTCAGGACAT
GGGCTGTCATCCCGAGGAGCCGGGTAAAATATGCGCTGCAGCACCACCCA
CTTTGAATGAGTACGAGAAACAGGAAAACTTACGTGCAGCCAAATCCGAA
GAAGAATCTCCGCAGAAGCGAGGCTGCTCGCTGGCCGGCAATGGATGTGA
ACGAAACGCGGAGTCCGCCGAGGATGTCGACGATAAGGCCAGTGTGAGCA
GCTATAGCAGCTGCCGCCAGCTGCAGCCAGTTGTCAAACTACGCAAACTC
CCAACCATTGCGTCTGTACCTGAACCATCTTCCGCCCCCAAGAGATACGA
CTTCAATACTGAGGCTGTGGTGCGCGTAAAGCGCCTATGGAATGAACTGC
CCTGTCCGGATCGAGGGGCCAACCTGCTCACCAACGGTGTAGTAAAGAAT
ACCAAACGAATGCGCTTCCAGACAAAAGTACTCACACTTGACGACGAGGA
TGCAAGCTTTCTAGACCAT
BO08938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RA | 1488 | CG15835-PA | 1..1485 | 17..1501 | 7425 | 100 | Plus |
| Kdm4A-RB | 1470 | CG15835-PB | 1..1467 | 17..1501 | 7120 | 98.8 | Plus |
| Kdm4B-RE | 2154 | CG33182-PE | 508..947 | 551..990 | 505 | 74.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-RA | 2022 | CG15835-RA | 73..1557 | 17..1501 | 7425 | 100 | Plus |
| Kdm4A-RB | 2004 | CG15835-RB | 73..1539 | 17..1501 | 7120 | 98.8 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 1117..1556 | 551..990 | 505 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7923669..7924533 | 1128..264 | 4325 | 100 | Minus |
| 2R | 25286936 | 2R | 7923240..7923612 | 1501..1129 | 1865 | 100 | Minus |
| 2R | 25286936 | 2R | 7924761..7924916 | 172..17 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7924597..7924689 | 265..173 | 465 | 100 | Minus |
| 2R | 25286936 | 2R | 13186747..13186924 | 990..813 | 440 | 83.1 | Minus |
| 2R | 25286936 | 2R | 13187132..13187244 | 663..551 | 205 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:39 has no hits.
BO08938.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:24 Download gff for
BO08938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 1..1488 | 17..1504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:35 Download gff for
BO08938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 59..1560 | 8..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:02 Download gff for
BO08938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 73..1557 | 17..1503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:24 Download gff for
BO08938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15835-RA | 59..1560 | 8..1509 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:29 Download gff for
BO08938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Kdm4A-RA | 73..1557 | 17..1503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:29 Download gff for
BO08938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7923237..7923612 | 1129..1503 | 99 | <- | Minus |
| 2R | 7923669..7924532 | 265..1128 | 100 | <- | Minus |
| 2R | 7924598..7924689 | 173..264 | 100 | <- | Minus |
| 2R | 7924761..7924916 | 17..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:02 Download gff for
BO08938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3810742..3811117 | 1129..1503 | 99 | <- | Minus |
| arm_2R | 3811174..3812037 | 265..1128 | 100 | <- | Minus |
| arm_2R | 3812103..3812194 | 173..264 | 100 | <- | Minus |
| arm_2R | 3812266..3812421 | 17..172 | 100 | | Minus |
BO08938.pep Sequence
Translation from 16 to 1519
> BO08938.pep
MSTRSSFADEEQNKVPRIMTFRPSYEEFQNFSAYIEYIESRGAHLAGLAK
IQPPAEWVPRKSGYDIDNINMTIPAPICQVVTGAHGVYQQINIQQRRQMT
LRQFMEKANSELHQTPRHFDYDDLERKYWKNITYISPLYAADVKGSLSDE
DLDVWNIGRLDTILNLVNTDYNIIIDGVNTAYLYFGMWKSSFAWHTEDMD
LYSINYLHFGAPKTWYAIPPAYGRRLEKLANETFSENYQECNAYLRHKMT
MISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNGAESTNFAS
KRWIEYGKRASICRCRSDMVKISMETFVRRFQPERYDNWLKGQDMGCHPE
EPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGCERNAES
AEDVDDKASVSSYSSCRQLQPVVKLRKLPTIASVPEPSSAPKRYDFNTEA
VVRVKRLWNELPCPDRGANLLTNGVVKNTKRMRFQTKVLTLDDEDASFLD
H
BO08938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Kdm4A-PA | 495 | CG15835-PA | 1..495 | 1..495 | 2657 | 100 | Plus |
| Kdm4A-PB | 489 | CG15835-PB | 1..489 | 1..495 | 2604 | 98.6 | Plus |
| Kdm4B-PD | 590 | CG33182-PD | 2..380 | 11..380 | 1380 | 65.8 | Plus |
| Kdm4B-PC | 590 | CG33182-PC | 2..380 | 11..380 | 1380 | 65.8 | Plus |
| Kdm4B-PB | 590 | CG33182-PB | 2..380 | 11..380 | 1380 | 65.8 | Plus |
