Clone BO08939 Report

Search the DGRC for BO08939

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptalpha-Est1-RA
Protein status:BO08939.pep: validated full length
Sequenced Size:1729

Clone Sequence Records

BO08939.3prime Sequence

810 bp (809 high quality bases) assembled on 2006-01-10

> BO08939.3prime
ATGGTCTAGAAAGCTTGCAAACAAGTCGTTTTTATCGTATAGTCTATCCC
AAATCCGATTCTGTTTCGACTCCGGCAGCACAATGAACTCCAGTTGTTTT
CCAATATTGAGACACATCTGCGGACCTTTCTCATCTAGTGCCTCCCATGT
GGTCGGGCCGATCTGTGGACAATTGGGATTGTCGTTTCGGGCGAATGCCA
CCCACATGCCCACCAGTCTCTGTATGGTTTGGTACTCCATCGAGGACTTA
TCCACCTTGTTGGCCAAAATGTGATAGAAAAGGTAGGAGAGATCGTCGGC
ATGACTAACTCCGCGAACGTGTTTTCCGCACATCACCTGCCGGAAGTGAT
TGAAATGGGGCGAGTCCACATCGAAGCGGTACAGGTAGGTGGGCGTTGCG
GGGGCGTGGCTGAGCCGGGCCAATACAGTGCGATGAATGCCATGCCAAAA
GTGTTTAACGGACAGTATGTGCAGGCACTCATTGAACTCCATTCGCCCTC
GAGTCGCATCATCGAAGTTATCCACCTTAAATTGACGTAGCAGATCCTTA
AGATGCGACTGGGTACTCTTCTCCCTGATCTCCCGAGGAATTAGGACCTC
AAAAGCACTCAGCATGTGTTCCTCGTCGTGCAGGGTACTCTGGTAGGAGA
ACAGACCTTCAAAGGAGTTGCCGCCCAGGATCAGCGGCAGGTCATTACCC
CAAGCTTCCGGCAGCATCTCCCTGTGGCAACGGGGCAAAACGCAATCCCT
GGTGATATATGGTTCCACAACGGGAGTAAAGGGAAACAGGACGTACTGCC
GCCGTTCCTC

BO08939.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1031-PA 1698 alpha-Est1-RA 904..1695 810..19 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 2123 CG1031-RA 1090..1881 810..19 3960 100 Minus
alpha-Est2-RB 2141 CG2505-RB 1594..1797 405..202 240 75.1 Minus
alpha-Est2-RA 1958 CG2505-RA 1411..1614 405..202 240 75.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7545975..7546766 19..810 3960 100 Plus
3R 32079331 3R 7544683..7544886 405..202 240 74.5 Minus
Blast to na_te.dros performed on 2015-02-10 18:45:06 has no hits.

BO08939.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:27 Download gff for BO08939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 904..1698 18..810 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:10 Download gff for BO08939.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 904..1698 18..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:51 Download gff for BO08939.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 1090..1881 19..810 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:52 Download gff for BO08939.3prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 1090..1881 19..810 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:52 Download gff for BO08939.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7545975..7546766 19..810 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:51 Download gff for BO08939.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3371697..3372488 19..810 100   Plus

BO08939.5prime Sequence

880 bp (789 high quality bases) assembled on 2006-01-10

> BO08939.5prime
GAAGTTATCAGTCGACATGGAGATCCGAGTGGGAGTGGGCGATCTGCTGA
AAATGGGCACCAAGCTCATTGGCCACAAGATCGTCCAGTATCGCCTTGGC
ACAAAGCAGACGAAGGTGGTCTGCACCAGGGATGGCCAGGTGCGCGGACA
TCGCCGAAGGACACTCTACGACGAGGAGATGTACTTCGCCTTCGAGGGAA
TCCCCTTTGCACAGCCGCCGGTGGGGGAGCTGCGCTTCCGAGCCCCCCAG
CCACCACATCCCTGGTTGGGGGTGCGGGATTGCACCTATCCGCGGGCCAA
GCCGATGCAAAAGCACTTCGTGCTCAGCATCGTCGAAGGCAGCGAGGATT
GCCTGTACCTGAACGTATATTCCAAGCGCCTGAGATCGGACAAGCCGCTG
CCCGTGATCGTGTGGATCTATGGCGGTGGATTCCAGTTCGGCGAGGCTGG
TCGAGATTTCTACAGTCCAGACTACTTTATGCAGCAAGACGTAGTGGTTG
TCACATTCAATTATAGGGTGGGCGCATTGGGCTTCCTCAGCCTCGCGGAT
CGCGACTTGGATGTGCCCGGAAATGCTGGTCTCAAGGACCAAGTGATGGC
CCTTCGCTGGATCAGTCAGAACATAGCCCAATTCAATGGAGATCCCCAAA
ATATAACCGTGATGGGCGAGAGTGCGGGAGCAGCCTCCGTTCACGCGTTG
ATGACCACCGAGCAAACCCGAGGGCTGTTCCACAAGGCCATCATGCAATC
GGGATCCATGTTCTGCGAGTGGGCCAATGAGCCAAGTGGCAGGTGGGCAT
ACCGACTGGCCTGCCCATTGGGATACTCGGGCAGTGAGAACGAGAAGGAA
GTGTTTCGATACCTTCAGAAAGCACCCGCC

BO08939.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG1031-PA 1698 alpha-Est1-RA 1..864 17..880 4295 99.8 Plus
CG1128-PB 1665 alpha-Est9-RB 332..380 399..447 145 91.8 Plus
CG1128-PA 1719 alpha-Est9-RA 332..380 399..447 145 91.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 2123 CG1031-RA 187..1050 17..880 4305 99.9 Plus
alpha-Est2-RB 2141 CG2505-RB 396..1027 124..755 550 73.5 Plus
alpha-Est2-RA 1958 CG2505-RA 213..844 124..755 550 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7547769..7548236 531..64 2340 100 Minus
3R 32079331 3R 7546806..7547156 880..530 1740 99.7 Minus
3R 32079331 3R 7543919..7544116 558..755 405 80.3 Plus
3R 32079331 3R 7548891..7548938 64..17 240 100 Minus
2R 25286936 2R 22550414..22550565 158..309 220 76.3 Plus
3R 32079331 3R 7487996..7488205 610..401 195 72.9 Minus
3R 32079331 3R 7496807..7496855 447..399 185 91.8 Minus
Blast to na_te.dros performed on 2015-02-11 10:50:31 has no hits.

BO08939.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:29 Download gff for BO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:11 Download gff for BO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1031-PA 1..864 17..880 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:55 Download gff for BO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1050 17..880 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:00 Download gff for BO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1050 17..880 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:00 Download gff for BO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7546806..7547155 531..880 99 <- Minus
3R 7547770..7548236 64..530 100 <- Minus
3R 7548892..7548938 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:55 Download gff for BO08939.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3372528..3372877 531..880 99 <- Minus
arm_3R 3373492..3373958 64..530 100 <- Minus
arm_3R 3374614..3374660 17..63 100   Minus

BO08939.complete Sequence

1729 bp assembled on 2007-10-05

GenBank Submission: FJ638661

> BO08939.complete
GAAGTTATCAGTCGACATGGAGATCCGAGTGGGAGTGGGCGATCTGCTGA
AAATGGGCACCAAGCTCATTGGCCACAAGATCGTCCAGTATCGCCTTGGC
ACAAAGCAGACGAAGGTGGTCTGCACCAGGGATGGCCAGGTGCGCGGACA
TCGCCGAAGGACACTCTACGACGAGGAGATGTACTTCGCCTTCGAGGGAA
TCCCCTTTGCACAGCCGCCGGTGGGGGAGCTGCGCTTCCGAGCCCCCCAG
CCACCACATCCCTGGTTGGGGGTGCGGGATTGCACCTATCCGCGGGCCAA
GCCGATGCAAAAGCACTTCGTGCTCAGCATCGTCGAAGGCAGCGAGGATT
GCCTGTACCTGAACGTATATTCCAAGCGCCTGAGATCGGACAAGCCGCTG
CCCGTGATCGTGTGGATCTATGGCGGTGGATTCCAGTTCGGCGAGGCTGG
TCGAGATTTCTACAGTCCAGACTACTTTATGCAGCAAGACGTAGTGGTTG
TCACATTCAATTATAGGGTGGGCGCATTGGGCTTCCTCAGCCTCGCGGAT
CGCGACTTGGATGTGCCCGGAAATGCTGGTCTCAAGGACCAAGTGATGGC
CCTTCGCTGGATCAGTCAGAACATAGCCCAATTCAATGGAGATCCCCAAA
ATATAACCGTGATGGGCGAGAGTGCGGGAGCAGCCTCCGTTCACGCGTTG
ATGACCACCGAGCAAACCCGAGGGCTGTTCCACAAGGCCATCATGCAATC
GGGATCCATGTTCTGCGAGTGGGCCAATGAGCCAAGTGGCAGGTGGGCAT
ACCGACTGGCCTGCCAATTGGGATACTCGGGCAGTGAGAACGAGAAGGAA
GTGTTTCGATACCTTCAGAAAGCACCCGCCTCCGAAATGGCCGCACAGGG
TATTACTCTTGTCTCCCAAGAGGAACGGCGGCAGTACGTCCTGTTTCCCT
TTACTCCCGTTGTGGAACCATATATCACCAGGGATTGCGTTTTGCCCCGT
TGCCACAGGGAGATGCTGCCGGAAGCTTGGGGTAATGACCTGCCGCTGAT
CCTGGGCGGCAACTCCTTTGAAGGTCTGTTCTCCTACCAGAGTACCCTGC
ACGACGAGGAACACATGCTGAGTGCTTTTGAGGTCCTAATTCCTCGGGAG
ATCAGGGAGAAGAGTACCCAGTCGCATCTTAAGGATCTGCTACGTCAATT
TAAGGTGGATAACTTCGATGATGCGACTCGAGGGCGAATGGAGTTCAATG
AGTGCCTGCACATACTGTCCGTTAAACACTTTTGGCATGGCATTCATCGC
ACTGTATTGGCCCGGCTCAGCCACGCCCCCGCAACGCCCACCTACCTGTA
CCGCTTCGATGTGGACTCGCCCCATTTCAATCACTTCCGGCAGGTGATGT
GCGGAAAACACGTTCGCGGAGTTAGTCATGCCGACGATCTCTCCTACCTT
TTCTATCACATTTTGGCCAACAAGGTGGATAAGTCCTCGATGGAGTACCA
AACCATACAGAGACTGGTGGGCATGTGGGTGGCATTCGCCCGAAACGACA
ATCCCAATTGTCCACAGATCGGCCCGACCACATGGGAGGCACTAGATGAG
AAAGGTCCGCAGATGTGTCTCAATATTGGAAAACAACTGGAGTTCATTGT
GCTGCCGGAGTCGAAACAGAATCGGATTTGGGATAGACTATACGATAAAA
ACGACTTGTTTGCAAGCTTTCTAGACCAT

BO08939.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 1698 CG1031-PA 1..1695 17..1711 8475 100 Plus
alpha-Est2-RB 1701 CG2505-PB 108..739 124..755 505 72 Plus
alpha-Est2-RA 1701 CG2505-PA 108..739 124..755 505 72 Plus
alpha-Est2-RB 1701 CG2505-PB 1306..1509 1325..1528 240 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-RA 2123 CG1031-RA 187..1881 17..1711 8475 100 Plus
alpha-Est2-RB 2141 CG2505-RB 396..1027 124..755 505 72 Plus
alpha-Est2-RA 1958 CG2505-RA 213..844 124..755 505 72 Plus
alpha-Est2-RB 2141 CG2505-RB 1594..1797 1325..1528 240 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7545975..7547156 1711..530 5910 100 Minus
3R 32079331 3R 7547769..7548236 531..64 2340 100 Minus
3R 32079331 3R 7543919..7544116 558..755 405 80.3 Plus
3R 32079331 3R 7544683..7544886 1325..1528 240 74.5 Plus
3R 32079331 3R 7548891..7548938 64..17 240 100 Minus
2R 25286936 2R 22550414..22550565 158..309 220 76.3 Plus
3R 32079331 3R 7487996..7488205 610..401 195 72.9 Minus
3R 32079331 3R 7496807..7496855 447..399 185 91.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:38:22 has no hits.

BO08939.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:07 Download gff for BO08939.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 1..1698 17..1712 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:13 Download gff for BO08939.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 185..1879 17..1711 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:18 Download gff for BO08939.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1881 17..1713 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:07 Download gff for BO08939.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 185..1879 17..1711 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:47 Download gff for BO08939.complete
Subject Subject Range Query Range Percent Splice Strand
alpha-Est1-RA 187..1881 17..1713 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:47 Download gff for BO08939.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7545973..7547155 531..1713 99 <- Minus
3R 7547770..7548236 64..530 100 <- Minus
3R 7548892..7548938 17..63 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:18 Download gff for BO08939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3371695..3372877 531..1713 99 <- Minus
arm_3R 3373492..3373958 64..530 100 <- Minus
arm_3R 3374614..3374660 17..63 100   Minus

BO08939.pep Sequence

Translation from 16 to 1729

> BO08939.pep
MEIRVGVGDLLKMGTKLIGHKIVQYRLGTKQTKVVCTRDGQVRGHRRRTL
YDEEMYFAFEGIPFAQPPVGELRFRAPQPPHPWLGVRDCTYPRAKPMQKH
FVLSIVEGSEDCLYLNVYSKRLRSDKPLPVIVWIYGGGFQFGEAGRDFYS
PDYFMQQDVVVVTFNYRVGALGFLSLADRDLDVPGNAGLKDQVMALRWIS
QNIAQFNGDPQNITVMGESAGAASVHALMTTEQTRGLFHKAIMQSGSMFC
EWANEPSGRWAYRLACQLGYSGSENEKEVFRYLQKAPASEMAAQGITLVS
QEERRQYVLFPFTPVVEPYITRDCVLPRCHREMLPEAWGNDLPLILGGNS
FEGLFSYQSTLHDEEHMLSAFEVLIPREIREKSTQSHLKDLLRQFKVDNF
DDATRGRMEFNECLHILSVKHFWHGIHRTVLARLSHAPATPTYLYRFDVD
SPHFNHFRQVMCGKHVRGVSHADDLSYLFYHILANKVDKSSMEYQTIQRL
VGMWVAFARNDNPNCPQIGPTTWEALDEKGPQMCLNIGKQLEFIVLPESK
QNRIWDRLYDKNDLFASFLDH

BO08939.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
alpha-Est1-PA 565 CG1031-PA 1..565 1..565 3039 100 Plus
CG6018-PA 566 CG6018-PA 1..566 1..565 1915 60.1 Plus
alpha-Est2-PB 566 CG2505-PB 1..566 1..565 1816 59.6 Plus
alpha-Est2-PA 566 CG2505-PA 1..566 1..565 1816 59.6 Plus
alpha-Est9-PC 569 CG1128-PC 8..568 9..564 1413 48 Plus