Clone Sequence Records
BO08939.3prime Sequence
810 bp (809 high quality bases) assembled on 2006-01-10
> BO08939.3prime
ATGGTCTAGAAAGCTTGCAAACAAGTCGTTTTTATCGTATAGTCTATCCC
AAATCCGATTCTGTTTCGACTCCGGCAGCACAATGAACTCCAGTTGTTTT
CCAATATTGAGACACATCTGCGGACCTTTCTCATCTAGTGCCTCCCATGT
GGTCGGGCCGATCTGTGGACAATTGGGATTGTCGTTTCGGGCGAATGCCA
CCCACATGCCCACCAGTCTCTGTATGGTTTGGTACTCCATCGAGGACTTA
TCCACCTTGTTGGCCAAAATGTGATAGAAAAGGTAGGAGAGATCGTCGGC
ATGACTAACTCCGCGAACGTGTTTTCCGCACATCACCTGCCGGAAGTGAT
TGAAATGGGGCGAGTCCACATCGAAGCGGTACAGGTAGGTGGGCGTTGCG
GGGGCGTGGCTGAGCCGGGCCAATACAGTGCGATGAATGCCATGCCAAAA
GTGTTTAACGGACAGTATGTGCAGGCACTCATTGAACTCCATTCGCCCTC
GAGTCGCATCATCGAAGTTATCCACCTTAAATTGACGTAGCAGATCCTTA
AGATGCGACTGGGTACTCTTCTCCCTGATCTCCCGAGGAATTAGGACCTC
AAAAGCACTCAGCATGTGTTCCTCGTCGTGCAGGGTACTCTGGTAGGAGA
ACAGACCTTCAAAGGAGTTGCCGCCCAGGATCAGCGGCAGGTCATTACCC
CAAGCTTCCGGCAGCATCTCCCTGTGGCAACGGGGCAAAACGCAATCCCT
GGTGATATATGGTTCCACAACGGGAGTAAAGGGAAACAGGACGTACTGCC
GCCGTTCCTC
BO08939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1031-PA | 1698 | alpha-Est1-RA | 904..1695 | 810..19 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est1-RA | 2123 | CG1031-RA | 1090..1881 | 810..19 | 3960 | 100 | Minus |
alpha-Est2-RB | 2141 | CG2505-RB | 1594..1797 | 405..202 | 240 | 75.1 | Minus |
alpha-Est2-RA | 1958 | CG2505-RA | 1411..1614 | 405..202 | 240 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7545975..7546766 | 19..810 | 3960 | 100 | Plus |
3R | 32079331 | 3R | 7544683..7544886 | 405..202 | 240 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:45:06 has no hits.
BO08939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:27 Download gff for
BO08939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1031-PA | 904..1698 | 18..810 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:10 Download gff for
BO08939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1031-PA | 904..1698 | 18..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:01:51 Download gff for
BO08939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 1090..1881 | 19..810 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:52 Download gff for
BO08939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 1090..1881 | 19..810 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:52 Download gff for
BO08939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7545975..7546766 | 19..810 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:01:51 Download gff for
BO08939.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3371697..3372488 | 19..810 | 100 | | Plus |
BO08939.5prime Sequence
880 bp (789 high quality bases) assembled on 2006-01-10
> BO08939.5prime
GAAGTTATCAGTCGACATGGAGATCCGAGTGGGAGTGGGCGATCTGCTGA
AAATGGGCACCAAGCTCATTGGCCACAAGATCGTCCAGTATCGCCTTGGC
ACAAAGCAGACGAAGGTGGTCTGCACCAGGGATGGCCAGGTGCGCGGACA
TCGCCGAAGGACACTCTACGACGAGGAGATGTACTTCGCCTTCGAGGGAA
TCCCCTTTGCACAGCCGCCGGTGGGGGAGCTGCGCTTCCGAGCCCCCCAG
CCACCACATCCCTGGTTGGGGGTGCGGGATTGCACCTATCCGCGGGCCAA
GCCGATGCAAAAGCACTTCGTGCTCAGCATCGTCGAAGGCAGCGAGGATT
GCCTGTACCTGAACGTATATTCCAAGCGCCTGAGATCGGACAAGCCGCTG
CCCGTGATCGTGTGGATCTATGGCGGTGGATTCCAGTTCGGCGAGGCTGG
TCGAGATTTCTACAGTCCAGACTACTTTATGCAGCAAGACGTAGTGGTTG
TCACATTCAATTATAGGGTGGGCGCATTGGGCTTCCTCAGCCTCGCGGAT
CGCGACTTGGATGTGCCCGGAAATGCTGGTCTCAAGGACCAAGTGATGGC
CCTTCGCTGGATCAGTCAGAACATAGCCCAATTCAATGGAGATCCCCAAA
ATATAACCGTGATGGGCGAGAGTGCGGGAGCAGCCTCCGTTCACGCGTTG
ATGACCACCGAGCAAACCCGAGGGCTGTTCCACAAGGCCATCATGCAATC
GGGATCCATGTTCTGCGAGTGGGCCAATGAGCCAAGTGGCAGGTGGGCAT
ACCGACTGGCCTGCCCATTGGGATACTCGGGCAGTGAGAACGAGAAGGAA
GTGTTTCGATACCTTCAGAAAGCACCCGCC
BO08939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1031-PA | 1698 | alpha-Est1-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
CG1128-PB | 1665 | alpha-Est9-RB | 332..380 | 399..447 | 145 | 91.8 | Plus |
CG1128-PA | 1719 | alpha-Est9-RA | 332..380 | 399..447 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est1-RA | 2123 | CG1031-RA | 187..1050 | 17..880 | 4305 | 99.9 | Plus |
alpha-Est2-RB | 2141 | CG2505-RB | 396..1027 | 124..755 | 550 | 73.5 | Plus |
alpha-Est2-RA | 1958 | CG2505-RA | 213..844 | 124..755 | 550 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7547769..7548236 | 531..64 | 2340 | 100 | Minus |
3R | 32079331 | 3R | 7546806..7547156 | 880..530 | 1740 | 99.7 | Minus |
3R | 32079331 | 3R | 7543919..7544116 | 558..755 | 405 | 80.3 | Plus |
3R | 32079331 | 3R | 7548891..7548938 | 64..17 | 240 | 100 | Minus |
2R | 25286936 | 2R | 22550414..22550565 | 158..309 | 220 | 76.3 | Plus |
3R | 32079331 | 3R | 7487996..7488205 | 610..401 | 195 | 72.9 | Minus |
3R | 32079331 | 3R | 7496807..7496855 | 447..399 | 185 | 91.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:50:31 has no hits.
BO08939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:29 Download gff for
BO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1031-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:11 Download gff for
BO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1031-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:00:55 Download gff for
BO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 187..1050 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:00 Download gff for
BO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 187..1050 | 17..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:00 Download gff for
BO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7546806..7547155 | 531..880 | 99 | <- | Minus |
3R | 7547770..7548236 | 64..530 | 100 | <- | Minus |
3R | 7548892..7548938 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:00:55 Download gff for
BO08939.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3372528..3372877 | 531..880 | 99 | <- | Minus |
arm_3R | 3373492..3373958 | 64..530 | 100 | <- | Minus |
arm_3R | 3374614..3374660 | 17..63 | 100 | | Minus |
BO08939.complete Sequence
1729 bp assembled on 2007-10-05
GenBank Submission: FJ638661
> BO08939.complete
GAAGTTATCAGTCGACATGGAGATCCGAGTGGGAGTGGGCGATCTGCTGA
AAATGGGCACCAAGCTCATTGGCCACAAGATCGTCCAGTATCGCCTTGGC
ACAAAGCAGACGAAGGTGGTCTGCACCAGGGATGGCCAGGTGCGCGGACA
TCGCCGAAGGACACTCTACGACGAGGAGATGTACTTCGCCTTCGAGGGAA
TCCCCTTTGCACAGCCGCCGGTGGGGGAGCTGCGCTTCCGAGCCCCCCAG
CCACCACATCCCTGGTTGGGGGTGCGGGATTGCACCTATCCGCGGGCCAA
GCCGATGCAAAAGCACTTCGTGCTCAGCATCGTCGAAGGCAGCGAGGATT
GCCTGTACCTGAACGTATATTCCAAGCGCCTGAGATCGGACAAGCCGCTG
CCCGTGATCGTGTGGATCTATGGCGGTGGATTCCAGTTCGGCGAGGCTGG
TCGAGATTTCTACAGTCCAGACTACTTTATGCAGCAAGACGTAGTGGTTG
TCACATTCAATTATAGGGTGGGCGCATTGGGCTTCCTCAGCCTCGCGGAT
CGCGACTTGGATGTGCCCGGAAATGCTGGTCTCAAGGACCAAGTGATGGC
CCTTCGCTGGATCAGTCAGAACATAGCCCAATTCAATGGAGATCCCCAAA
ATATAACCGTGATGGGCGAGAGTGCGGGAGCAGCCTCCGTTCACGCGTTG
ATGACCACCGAGCAAACCCGAGGGCTGTTCCACAAGGCCATCATGCAATC
GGGATCCATGTTCTGCGAGTGGGCCAATGAGCCAAGTGGCAGGTGGGCAT
ACCGACTGGCCTGCCAATTGGGATACTCGGGCAGTGAGAACGAGAAGGAA
GTGTTTCGATACCTTCAGAAAGCACCCGCCTCCGAAATGGCCGCACAGGG
TATTACTCTTGTCTCCCAAGAGGAACGGCGGCAGTACGTCCTGTTTCCCT
TTACTCCCGTTGTGGAACCATATATCACCAGGGATTGCGTTTTGCCCCGT
TGCCACAGGGAGATGCTGCCGGAAGCTTGGGGTAATGACCTGCCGCTGAT
CCTGGGCGGCAACTCCTTTGAAGGTCTGTTCTCCTACCAGAGTACCCTGC
ACGACGAGGAACACATGCTGAGTGCTTTTGAGGTCCTAATTCCTCGGGAG
ATCAGGGAGAAGAGTACCCAGTCGCATCTTAAGGATCTGCTACGTCAATT
TAAGGTGGATAACTTCGATGATGCGACTCGAGGGCGAATGGAGTTCAATG
AGTGCCTGCACATACTGTCCGTTAAACACTTTTGGCATGGCATTCATCGC
ACTGTATTGGCCCGGCTCAGCCACGCCCCCGCAACGCCCACCTACCTGTA
CCGCTTCGATGTGGACTCGCCCCATTTCAATCACTTCCGGCAGGTGATGT
GCGGAAAACACGTTCGCGGAGTTAGTCATGCCGACGATCTCTCCTACCTT
TTCTATCACATTTTGGCCAACAAGGTGGATAAGTCCTCGATGGAGTACCA
AACCATACAGAGACTGGTGGGCATGTGGGTGGCATTCGCCCGAAACGACA
ATCCCAATTGTCCACAGATCGGCCCGACCACATGGGAGGCACTAGATGAG
AAAGGTCCGCAGATGTGTCTCAATATTGGAAAACAACTGGAGTTCATTGT
GCTGCCGGAGTCGAAACAGAATCGGATTTGGGATAGACTATACGATAAAA
ACGACTTGTTTGCAAGCTTTCTAGACCAT
BO08939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est1-RA | 1698 | CG1031-PA | 1..1695 | 17..1711 | 8475 | 100 | Plus |
alpha-Est2-RB | 1701 | CG2505-PB | 108..739 | 124..755 | 505 | 72 | Plus |
alpha-Est2-RA | 1701 | CG2505-PA | 108..739 | 124..755 | 505 | 72 | Plus |
alpha-Est2-RB | 1701 | CG2505-PB | 1306..1509 | 1325..1528 | 240 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est1-RA | 2123 | CG1031-RA | 187..1881 | 17..1711 | 8475 | 100 | Plus |
alpha-Est2-RB | 2141 | CG2505-RB | 396..1027 | 124..755 | 505 | 72 | Plus |
alpha-Est2-RA | 1958 | CG2505-RA | 213..844 | 124..755 | 505 | 72 | Plus |
alpha-Est2-RB | 2141 | CG2505-RB | 1594..1797 | 1325..1528 | 240 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7545975..7547156 | 1711..530 | 5910 | 100 | Minus |
3R | 32079331 | 3R | 7547769..7548236 | 531..64 | 2340 | 100 | Minus |
3R | 32079331 | 3R | 7543919..7544116 | 558..755 | 405 | 80.3 | Plus |
3R | 32079331 | 3R | 7544683..7544886 | 1325..1528 | 240 | 74.5 | Plus |
3R | 32079331 | 3R | 7548891..7548938 | 64..17 | 240 | 100 | Minus |
2R | 25286936 | 2R | 22550414..22550565 | 158..309 | 220 | 76.3 | Plus |
3R | 32079331 | 3R | 7487996..7488205 | 610..401 | 195 | 72.9 | Minus |
3R | 32079331 | 3R | 7496807..7496855 | 447..399 | 185 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:38:22 has no hits.
BO08939.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:07 Download gff for
BO08939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 1..1698 | 17..1712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:13 Download gff for
BO08939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 185..1879 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:18 Download gff for
BO08939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 187..1881 | 17..1713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:07 Download gff for
BO08939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 185..1879 | 17..1711 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:47 Download gff for
BO08939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
alpha-Est1-RA | 187..1881 | 17..1713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:47 Download gff for
BO08939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7545973..7547155 | 531..1713 | 99 | <- | Minus |
3R | 7547770..7548236 | 64..530 | 100 | <- | Minus |
3R | 7548892..7548938 | 17..63 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:18 Download gff for
BO08939.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3371695..3372877 | 531..1713 | 99 | <- | Minus |
arm_3R | 3373492..3373958 | 64..530 | 100 | <- | Minus |
arm_3R | 3374614..3374660 | 17..63 | 100 | | Minus |
BO08939.pep Sequence
Translation from 16 to 1729
> BO08939.pep
MEIRVGVGDLLKMGTKLIGHKIVQYRLGTKQTKVVCTRDGQVRGHRRRTL
YDEEMYFAFEGIPFAQPPVGELRFRAPQPPHPWLGVRDCTYPRAKPMQKH
FVLSIVEGSEDCLYLNVYSKRLRSDKPLPVIVWIYGGGFQFGEAGRDFYS
PDYFMQQDVVVVTFNYRVGALGFLSLADRDLDVPGNAGLKDQVMALRWIS
QNIAQFNGDPQNITVMGESAGAASVHALMTTEQTRGLFHKAIMQSGSMFC
EWANEPSGRWAYRLACQLGYSGSENEKEVFRYLQKAPASEMAAQGITLVS
QEERRQYVLFPFTPVVEPYITRDCVLPRCHREMLPEAWGNDLPLILGGNS
FEGLFSYQSTLHDEEHMLSAFEVLIPREIREKSTQSHLKDLLRQFKVDNF
DDATRGRMEFNECLHILSVKHFWHGIHRTVLARLSHAPATPTYLYRFDVD
SPHFNHFRQVMCGKHVRGVSHADDLSYLFYHILANKVDKSSMEYQTIQRL
VGMWVAFARNDNPNCPQIGPTTWEALDEKGPQMCLNIGKQLEFIVLPESK
QNRIWDRLYDKNDLFASFLDH
BO08939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
alpha-Est1-PA | 565 | CG1031-PA | 1..565 | 1..565 | 3039 | 100 | Plus |
CG6018-PA | 566 | CG6018-PA | 1..566 | 1..565 | 1915 | 60.1 | Plus |
alpha-Est2-PB | 566 | CG2505-PB | 1..566 | 1..565 | 1816 | 59.6 | Plus |
alpha-Est2-PA | 566 | CG2505-PA | 1..566 | 1..565 | 1816 | 59.6 | Plus |
alpha-Est9-PC | 569 | CG1128-PC | 8..568 | 9..564 | 1413 | 48 | Plus |