Clone Sequence Records
BO08940.3prime Sequence
882 bp (864 high quality bases) assembled on 2006-01-10
> BO08940.3prime
ATGGTCTAGAAAGCTTGCTCTGGCGAAGAGCAACGCCGCCAGGATGCCCA
CAAGAGCGAACGAAGTGGCGGACACATCCTCGGCTCCGGCGATGTACGCC
TGTCCACAGGCCGGTGGGCACACGGGAATGATCGTCTCGAAGAGATTGAC
GCGCGCCTCCGCCTCTCCAAAGCGATTGGTGGCCTTGCACACATAATCTC
CGTACTGGCGCTTCTCAACGGTGATCACACGGAGCGTCGAGTCGGTATAC
TCGTCGGCGGTGGCGAAGTGCGAGATGCTGTAGTGCTGGTTGTTGGCCAG
CTGGATGTCGTCCTTGGTCCACACAATGGCCGGTGGCGGATAGGCCTCAA
TGTGGCACTCCAAGTCCATGTCGTACTGCAGAGCCTGTCCCAAACGAGGA
CGCGGCACGGTGATCACTGGTGCGAACTCCACCTCCACGTTGATATTGCG
CCTGTCGCCCTTGCTCACTCCATTGTCGGCCACGCAGTAGTAGGTGCCGC
GATCCTCCTTCTTCACTGACTTGATGCGCAGGGTGTTGCCCACATAGGTG
GCACTATCAGTTGGCAGAATGGCATTGTTCTCGCGCCTCCAGGTGATGGT
GGGTGTGGGATAGCCGCTGGCGTAGCACTCCATCTGGACCTCGCTGCCCT
CGCTGGCCACCACCGACTGCGTGGAGTTGTCCGAGATGACGGGGGGACGG
CGCACCGATAGCTTCACTTCGGCGCTCACTTTGTGAACGGTGGAGATCAC
CACCTGGCAGGTGTAGGTGCCCGCGTCCGTCTCCTGAATGTCCTTGATCT
GCAGCTTGTANGTGGACGAGTTGGGATCGTACCGCAGCGAGAAGCGCGAA
TCCTTGATGACCAGCGTGGAGCCCGTGGAGAG
BO08940.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12369-PA | 1080 | Lac-RA | 214..1077 | 882..19 | 4301 | 99.8 | Minus |
CG12369-PB | 759 | Lac-RB | 341..756 | 434..19 | 2080 | 100 | Minus |
CG12369-PB | 759 | Lac-RB | 214..346 | 882..750 | 646 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lac-RA | 2156 | CG12369-RA | 541..1404 | 882..19 | 4309 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12464339..12464878 | 558..19 | 2700 | 100 | Minus |
2R | 25286936 | 2R | 12453730..12454054 | 882..558 | 1614 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:55:14 has no hits.
BO08940.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:29 Download gff for
BO08940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-PA | 214..1080 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:13 Download gff for
BO08940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12369-PA | 214..1080 | 15..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:04 Download gff for
BO08940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 541..1409 | 13..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:06 Download gff for
BO08940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 541..1409 | 13..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:06 Download gff for
BO08940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12453730..12454054 | 558..882 | 99 | -> | Minus |
2R | 12464340..12464883 | 13..557 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:04 Download gff for
BO08940.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8341235..8341559 | 558..882 | 99 | -> | Minus |
arm_2R | 8351845..8352388 | 13..557 | 99 | | Minus |
BO08940.5prime Sequence
945 bp (845 high quality bases) assembled on 2006-01-10
> BO08940.5prime
GAAGTTATCAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGA
GCACCCTGCTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACC
CCGACCATATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCAC
AGTGGAGTTCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGT
TCCTGAAGACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTG
GTCATCAAGGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCAC
CTACAAGCTGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACA
CCTGCCAGGTGGTGATCTCCACCGTTCACAAAGTGAGCGCCGAAGTGAAG
CTATCGGTGCGCCGTCCCCCCGTCATCTCGGACAACTCCACGCAGTCGGT
GGTGGCCAGCGAGGGCAGCGAGGTCCAGATGGAGTGCTACGCCAGCGGCT
ATCCCACACCCACCATCACCTGGAGGCGCGAGAACAATGCCATTCTGCCA
ACTGATAGTGCCACCTATGTGGGCAACACCCTGCGCATCAAGTCAGTGAA
GAAGGAGGATCGCGGCACCTACTACTGCGTGGCCGACAATGGAGTGAGCA
AGGGCGACAGGCGCAATATCAACGTGGAGGTGGAGTTCGCACCAGTGATC
ACCGTGCCGCGTCCTCGTTTGGGACAGGCTCTGCAGTACGACATGGACTT
GGAGTGCCACATTGAGGCCTATCCGCCACCGGCCATTGTGTGGACCAAGG
ACGACATCCAGCTGGCCAACAACCAGCACTACAGCATCTCGCACTTCGCC
ACCGCCGACGAGTATACCGACTCGACGCTCCGTGTGATCACCGTTGAGAA
GCGCCAGTACGGAAATTATGTGTGCAAGGCCACCAATCCCTTTGG
BO08940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12369-PA | 1080 | Lac-RA | 1..929 | 17..945 | 4595 | 99.7 | Plus |
CG12369-PB | 759 | Lac-RB | 1..346 | 17..362 | 1730 | 100 | Plus |
CG12369-PB | 759 | Lac-RB | 341..608 | 678..945 | 1290 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lac-RA | 2156 | CG12369-RA | 328..1256 | 17..945 | 4615 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12453517..12454054 | 17..554 | 2690 | 100 | Plus |
2R | 25286936 | 2R | 12464339..12464730 | 554..945 | 1930 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 03:12:08 has no hits.
BO08940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:31 Download gff for
BO08940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:14 Download gff for
BO08940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12369-PA | 1..929 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:36 Download gff for
BO08940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 328..1256 | 17..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:17 Download gff for
BO08940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 328..1256 | 17..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:17 Download gff for
BO08940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12453517..12454054 | 17..554 | 100 | -> | Plus |
2R | 12464340..12464730 | 555..945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:36 Download gff for
BO08940.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8341022..8341559 | 17..554 | 100 | -> | Plus |
arm_2R | 8351845..8352235 | 555..945 | 99 | | Plus |
BO08940.complete Sequence
1111 bp (1111 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631327
> BO08940.complete
GAAGTTATCAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGA
GCACCCTGCTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACC
CCGACCATATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCAC
AGTGGAGTTCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGT
TCCTGAAGACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTG
GTCATCAAGGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCAC
CTACAAGCTGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACA
CCTGCCAGGTGGTGATCTCCACCGTTCACAAAGTGAGCGCCGAAGTGAAG
CTATCGGTGCGCCGTCCCCCCGTCATCTCGGACAACTCCACGCAGTCGGT
GGTGGCCAGCGAGGGCAGCGAGGTCCAGATGGAGTGCTACGCCAGCGGCT
ATCCCACACCCACCATCACCTGGAGGCGCGAGAACAATGCCATTCTGCCA
ACTGATAGTGCCACCTATGTGGGCAACACCCTGCGCATCAAGTCAGTGAA
GAAGGAGGATCGCGGCACCTACTACTGCGTGGCCGACAATGGAGTGAGCA
AGGGCGACAGGCGCAATATCAACGTGGAGGTGGAGTTCGCACCAGTGATC
ACCGTGCCGCGTCCTCGTTTGGGACAGGCTCTGCAGTACGACATGGACTT
GGAGTGCCACATTGAGGCCTATCCGCCACCGGCCATTGTGTGGACCAAGG
ACGACATCCAGCTGGCCAACAACCAGCACTACAGCATCTCGCACTTCGCC
ACCGCCGACGAGTATACCGACTCGACGCTCCGTGTGATCACCGTTGAGAA
GCGCCAGTACGGAGATTATGTGTGCAAGGCCACCAATCGCTTTGGAGAGG
CGGAGGCGCGCGTCAATCTCTTCGAGACGATCATTCCCGTGTGCCCACCG
GCCTGTGGACAGGCGTACATCGCCGGAGCCGAGGATGTGTCCGCCACTTC
GTTCGCTCTTGTGGGCATCCTGGCGGCGTTGCTCTTCGCCAGAGCAAGCT
TTCTAGACCAT
BO08940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lac-RA | 1080 | CG12369-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lac-RA | 2156 | CG12369-RA | 328..1404 | 17..1093 | 5385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12464339..12464878 | 554..1093 | 2700 | 100 | Plus |
2R | 25286936 | 2R | 12453517..12454054 | 17..554 | 2690 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:00:46 has no hits.
BO08940.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:26 Download gff for
BO08940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 1..1080 | 17..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:19 Download gff for
BO08940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 327..1403 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:39 Download gff for
BO08940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 328..1404 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:26 Download gff for
BO08940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 327..1408 | 17..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:01 Download gff for
BO08940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lac-RA | 328..1404 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:01 Download gff for
BO08940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12453517..12454054 | 17..554 | 100 | -> | Plus |
2R | 12464340..12464878 | 555..1095 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:39 Download gff for
BO08940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8341022..8341559 | 17..554 | 100 | -> | Plus |
arm_2R | 8351845..8352383 | 555..1095 | 99 | | Plus |
BO08940.pep Sequence
Translation from 16 to 1111
> BO08940.pep
MWRPSISNCVWSTLLLAIFVQQTLAQRTPTISYITQEQIKDIGGTVEFDC
SVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQI
KDIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPPVISDNSTQSVVASEG
SEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKSVKKEDRG
TYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIE
AYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGD
YVCKATNRFGEAEARVNLFETIIPVCPPACGQAYIAGAEDVSATSFALVG
ILAALLFARASFLDH
BO08940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lac-PA | 359 | CG12369-PA | 1..359 | 1..359 | 1862 | 100 | Plus |
Ama-PC | 333 | CG2198-PC | 14..329 | 16..325 | 656 | 38.1 | Plus |
Ama-PA | 333 | CG2198-PA | 14..329 | 16..325 | 656 | 38.1 | Plus |
Ama-PB | 341 | CG2198-PB | 22..337 | 16..325 | 656 | 38.1 | Plus |
CG32791-PC | 554 | CG32791-PC | 27..339 | 14..320 | 365 | 29 | Plus |