Clone BO08940 Report

Search the DGRC for BO08940

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptLac-RA
Protein status:BO08940.pep: validated full length
Sequenced Size:1111

Clone Sequence Records

BO08940.3prime Sequence

882 bp (864 high quality bases) assembled on 2006-01-10

> BO08940.3prime
ATGGTCTAGAAAGCTTGCTCTGGCGAAGAGCAACGCCGCCAGGATGCCCA
CAAGAGCGAACGAAGTGGCGGACACATCCTCGGCTCCGGCGATGTACGCC
TGTCCACAGGCCGGTGGGCACACGGGAATGATCGTCTCGAAGAGATTGAC
GCGCGCCTCCGCCTCTCCAAAGCGATTGGTGGCCTTGCACACATAATCTC
CGTACTGGCGCTTCTCAACGGTGATCACACGGAGCGTCGAGTCGGTATAC
TCGTCGGCGGTGGCGAAGTGCGAGATGCTGTAGTGCTGGTTGTTGGCCAG
CTGGATGTCGTCCTTGGTCCACACAATGGCCGGTGGCGGATAGGCCTCAA
TGTGGCACTCCAAGTCCATGTCGTACTGCAGAGCCTGTCCCAAACGAGGA
CGCGGCACGGTGATCACTGGTGCGAACTCCACCTCCACGTTGATATTGCG
CCTGTCGCCCTTGCTCACTCCATTGTCGGCCACGCAGTAGTAGGTGCCGC
GATCCTCCTTCTTCACTGACTTGATGCGCAGGGTGTTGCCCACATAGGTG
GCACTATCAGTTGGCAGAATGGCATTGTTCTCGCGCCTCCAGGTGATGGT
GGGTGTGGGATAGCCGCTGGCGTAGCACTCCATCTGGACCTCGCTGCCCT
CGCTGGCCACCACCGACTGCGTGGAGTTGTCCGAGATGACGGGGGGACGG
CGCACCGATAGCTTCACTTCGGCGCTCACTTTGTGAACGGTGGAGATCAC
CACCTGGCAGGTGTAGGTGCCCGCGTCCGTCTCCTGAATGTCCTTGATCT
GCAGCTTGTANGTGGACGAGTTGGGATCGTACCGCAGCGAGAAGCGCGAA
TCCTTGATGACCAGCGTGGAGCCCGTGGAGAG

BO08940.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12369-PA 1080 Lac-RA 214..1077 882..19 4301 99.8 Minus
CG12369-PB 759 Lac-RB 341..756 434..19 2080 100 Minus
CG12369-PB 759 Lac-RB 214..346 882..750 646 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:18
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 2156 CG12369-RA 541..1404 882..19 4309 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12464339..12464878 558..19 2700 100 Minus
2R 25286936 2R 12453730..12454054 882..558 1614 99.7 Minus
Blast to na_te.dros performed on 2015-02-10 22:55:14 has no hits.

BO08940.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:29 Download gff for BO08940.3prime
Subject Subject Range Query Range Percent Splice Strand
Lac-PA 214..1080 15..882 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:13 Download gff for BO08940.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12369-PA 214..1080 15..882 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:04 Download gff for BO08940.3prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 541..1409 13..882 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:22:06 Download gff for BO08940.3prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 541..1409 13..882 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:22:06 Download gff for BO08940.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12453730..12454054 558..882 99 -> Minus
2R 12464340..12464883 13..557 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:04 Download gff for BO08940.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8341235..8341559 558..882 99 -> Minus
arm_2R 8351845..8352388 13..557 99   Minus

BO08940.5prime Sequence

945 bp (845 high quality bases) assembled on 2006-01-10

> BO08940.5prime
GAAGTTATCAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGA
GCACCCTGCTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACC
CCGACCATATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCAC
AGTGGAGTTCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGT
TCCTGAAGACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTG
GTCATCAAGGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCAC
CTACAAGCTGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACA
CCTGCCAGGTGGTGATCTCCACCGTTCACAAAGTGAGCGCCGAAGTGAAG
CTATCGGTGCGCCGTCCCCCCGTCATCTCGGACAACTCCACGCAGTCGGT
GGTGGCCAGCGAGGGCAGCGAGGTCCAGATGGAGTGCTACGCCAGCGGCT
ATCCCACACCCACCATCACCTGGAGGCGCGAGAACAATGCCATTCTGCCA
ACTGATAGTGCCACCTATGTGGGCAACACCCTGCGCATCAAGTCAGTGAA
GAAGGAGGATCGCGGCACCTACTACTGCGTGGCCGACAATGGAGTGAGCA
AGGGCGACAGGCGCAATATCAACGTGGAGGTGGAGTTCGCACCAGTGATC
ACCGTGCCGCGTCCTCGTTTGGGACAGGCTCTGCAGTACGACATGGACTT
GGAGTGCCACATTGAGGCCTATCCGCCACCGGCCATTGTGTGGACCAAGG
ACGACATCCAGCTGGCCAACAACCAGCACTACAGCATCTCGCACTTCGCC
ACCGCCGACGAGTATACCGACTCGACGCTCCGTGTGATCACCGTTGAGAA
GCGCCAGTACGGAAATTATGTGTGCAAGGCCACCAATCCCTTTGG

BO08940.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12369-PA 1080 Lac-RA 1..929 17..945 4595 99.7 Plus
CG12369-PB 759 Lac-RB 1..346 17..362 1730 100 Plus
CG12369-PB 759 Lac-RB 341..608 678..945 1290 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 2156 CG12369-RA 328..1256 17..945 4615 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12453517..12454054 17..554 2690 100 Plus
2R 25286936 2R 12464339..12464730 554..945 1930 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 03:12:08 has no hits.

BO08940.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:31 Download gff for BO08940.5prime
Subject Subject Range Query Range Percent Splice Strand
Lac-PA 1..929 17..945 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:14 Download gff for BO08940.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12369-PA 1..929 17..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:42:36 Download gff for BO08940.5prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1256 17..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:14:17 Download gff for BO08940.5prime
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1256 17..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:14:17 Download gff for BO08940.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12453517..12454054 17..554 100 -> Plus
2R 12464340..12464730 555..945 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:42:36 Download gff for BO08940.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8341022..8341559 17..554 100 -> Plus
arm_2R 8351845..8352235 555..945 99   Plus

BO08940.complete Sequence

1111 bp (1111 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631327

> BO08940.complete
GAAGTTATCAGTCGACATGTGGCGGCCGAGTATCTCGAATTGCGTGTGGA
GCACCCTGCTCCTGGCCATTTTTGTGCAGCAAACGCTAGCACAGCGAACC
CCGACCATATCCTACATCACGCAGGAGCAGATCAAGGATATCGGCGGCAC
AGTGGAGTTCGATTGCTCCGTCCAGTATGCCAAAGAGTACAACGTGCTGT
TCCTGAAGACGGACAGCGATCCCGTCTTCCTCTCCACGGGCTCCACGCTG
GTCATCAAGGATTCGCGCTTCTCGCTGCGGTACGATCCCAACTCGTCCAC
CTACAAGCTGCAGATCAAGGACATTCAGGAGACGGACGCGGGCACCTACA
CCTGCCAGGTGGTGATCTCCACCGTTCACAAAGTGAGCGCCGAAGTGAAG
CTATCGGTGCGCCGTCCCCCCGTCATCTCGGACAACTCCACGCAGTCGGT
GGTGGCCAGCGAGGGCAGCGAGGTCCAGATGGAGTGCTACGCCAGCGGCT
ATCCCACACCCACCATCACCTGGAGGCGCGAGAACAATGCCATTCTGCCA
ACTGATAGTGCCACCTATGTGGGCAACACCCTGCGCATCAAGTCAGTGAA
GAAGGAGGATCGCGGCACCTACTACTGCGTGGCCGACAATGGAGTGAGCA
AGGGCGACAGGCGCAATATCAACGTGGAGGTGGAGTTCGCACCAGTGATC
ACCGTGCCGCGTCCTCGTTTGGGACAGGCTCTGCAGTACGACATGGACTT
GGAGTGCCACATTGAGGCCTATCCGCCACCGGCCATTGTGTGGACCAAGG
ACGACATCCAGCTGGCCAACAACCAGCACTACAGCATCTCGCACTTCGCC
ACCGCCGACGAGTATACCGACTCGACGCTCCGTGTGATCACCGTTGAGAA
GCGCCAGTACGGAGATTATGTGTGCAAGGCCACCAATCGCTTTGGAGAGG
CGGAGGCGCGCGTCAATCTCTTCGAGACGATCATTCCCGTGTGCCCACCG
GCCTGTGGACAGGCGTACATCGCCGGAGCCGAGGATGTGTCCGCCACTTC
GTTCGCTCTTGTGGGCATCCTGGCGGCGTTGCTCTTCGCCAGAGCAAGCT
TTCTAGACCAT

BO08940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 1080 CG12369-PA 1..1077 17..1093 5385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-RA 2156 CG12369-RA 328..1404 17..1093 5385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:00:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12464339..12464878 554..1093 2700 100 Plus
2R 25286936 2R 12453517..12454054 17..554 2690 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:00:46 has no hits.

BO08940.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:26 Download gff for BO08940.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 1..1080 17..1097 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:19 Download gff for BO08940.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 327..1403 17..1095 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:39 Download gff for BO08940.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1404 17..1095 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:26 Download gff for BO08940.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 327..1408 17..1099 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:01 Download gff for BO08940.complete
Subject Subject Range Query Range Percent Splice Strand
Lac-RA 328..1404 17..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:01 Download gff for BO08940.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12453517..12454054 17..554 100 -> Plus
2R 12464340..12464878 555..1095 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:39 Download gff for BO08940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8341022..8341559 17..554 100 -> Plus
arm_2R 8351845..8352383 555..1095 99   Plus

BO08940.pep Sequence

Translation from 16 to 1111

> BO08940.pep
MWRPSISNCVWSTLLLAIFVQQTLAQRTPTISYITQEQIKDIGGTVEFDC
SVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQI
KDIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPPVISDNSTQSVVASEG
SEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLRIKSVKKEDRG
TYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIE
AYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGD
YVCKATNRFGEAEARVNLFETIIPVCPPACGQAYIAGAEDVSATSFALVG
ILAALLFARASFLDH

BO08940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Lac-PA 359 CG12369-PA 1..359 1..359 1862 100 Plus
Ama-PC 333 CG2198-PC 14..329 16..325 656 38.1 Plus
Ama-PA 333 CG2198-PA 14..329 16..325 656 38.1 Plus
Ama-PB 341 CG2198-PB 22..337 16..325 656 38.1 Plus
CG32791-PC 554 CG32791-PC 27..339 14..320 365 29 Plus