Clone Sequence Records
BO08945.3prime Sequence
919 bp (858 high quality bases) assembled on 2006-01-10
> BO08945.3prime
ATGGTCTAGAAAGCTTGCCGAGCCTGTCGGCCTATTATCGCACAGGTTGC
TCCAGTCGGGAACGTGCTCGCTCTTTAGATACGTCTCCTTGACCAGCGAT
CGTGTCTGGATGAGATCCGTCGCGCCGCACAAGGCGCCGCCCAGCCAGGC
AGTAAAGTTTTGCTTGCCGACAGCATTGAAAAACTTGAACTGCAGCTCGC
CATGGAAGCGTTCGGCGTAGAACGGATCCTCGGTGAGCAGATGCTGCAGC
TCCTGGCGGAGGCGGGCCAGCAGACCCTGGACCATTGAGCCGCCGCCCAC
GAGGAACACACTCTCGACCAGGGCACGTCGCACGTCTAGTGTGCAGTCGA
GAATGGAGCGCAGGATGAGATGCGGCAGGCTGTCCCGCTCGTTGCTGGCC
TCGAACATGATCTCGTAGGCAGACTCCCGCAGGAGGCCGGGCACCTGGAT
GACCGCATCGTTGTCGCTGACAATGTAGTCCACGTCTGGCGCGGGAGTCG
GCTGATTCTCGTCGCCGTTGGCGCGGGCCTTGGCTCTTTCCATGGTGGTC
ACAAAGCAGGTTCGCACCTTGATGTCCTCCAGCACGCTTTCTGTTAGCAG
GCTCTCCTTAACGCCACTCTCAACCAGCTGCCGCTTGATCTCCGCGTGGA
TGGCGCTGCCTCCGTAGCTCTGATCCTTGAAGGCGGCCATGATTTGCACC
CCGCTGAAGACGGGCATAACGCTGGTCTCGCTGTAGCCAACGTCCACCAC
AAGGGCAGTGGGCACTGCCAGCGTAGACAGCGCAATGAGATGCACGGGCA
CGAACAGCACGGAGGAGACGTCGAAGTGGACAAAGAGCACGCGGGCCAAG
GTTTCACGCAGCACAGTGGATCCGAACACGTTCTCCACCAGCACGAACTT
GCGCTCCTTGGGGCTGACC
BO08945.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12235-PA | 1137 | Arp11-RA | 234..1134 | 919..19 | 4505 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp10-RB | 1536 | CG12235-RB | 494..1394 | 919..19 | 4505 | 100 | Minus |
Arp10-RA | 1374 | CG12235-RA | 332..1232 | 919..19 | 4505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19644673..19645573 | 19..919 | 4505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:10:12 has no hits.
BO08945.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:33 Download gff for
BO08945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp11-PA | 234..1137 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:16 Download gff for
BO08945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12235-PA | 234..1137 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:03 Download gff for
BO08945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp10-RA | 332..1232 | 19..919 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:29:47 Download gff for
BO08945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp10-RA | 332..1232 | 19..919 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:29:47 Download gff for
BO08945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19644673..19645573 | 19..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:03 Download gff for
BO08945.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19538706..19539606 | 19..919 | 100 | | Plus |
BO08945.5prime Sequence
902 bp (878 high quality bases) assembled on 2006-01-10
> BO08945.5prime
GAAGTTATCAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGC
CGCCCATTGTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCA
GCGGAGGCGTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCAC
GACGGGGATCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGT
ACGACCAGCTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTG
GTCAGCCCCAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATC
CACTGTGCTGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACG
TCTCCTCCGTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTG
GCAGTGCCCACTGCCCTTGTGGTGGACGTTGGCTACAGCGAGACCAGCGT
TATGCCCGTCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGA
GCTACGGAGGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAG
AGTGGCGTTAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAA
GGTGCGAACCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCA
ACGGCGACGAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTC
AGCGACAACGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGC
CTACGAGATCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATC
TCATCCTGCGCTCCATTCTCGACTGCACACTAGACGTGCGACGTGCCCTG
GTCGAGAGTGTGTTCCTCGTGGGCGGCGGCTCAATGGTCCAGGGTCTGCT
GG
BO08945.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12235-PA | 1137 | Arp11-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:26:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp10-RB | 1536 | CG12235-RB | 261..1146 | 17..902 | 4430 | 100 | Plus |
Arp10-RA | 1374 | CG12235-RA | 99..984 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:26:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19644921..19645582 | 902..241 | 3310 | 100 | Minus |
X | 23542271 | X | 19645632..19645785 | 241..88 | 770 | 100 | Minus |
X | 23542271 | X | 19645845..19645916 | 88..17 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:26:08 has no hits.
BO08945.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:34 Download gff for
BO08945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp11-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:18 Download gff for
BO08945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12235-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:55 Download gff for
BO08945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp10-RA | 91..984 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:26 Download gff for
BO08945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp10-RA | 91..984 | 9..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:26 Download gff for
BO08945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19644921..19645582 | 241..902 | 100 | <- | Minus |
X | 19645633..19645785 | 88..240 | 100 | <- | Minus |
X | 19645846..19645924 | 9..87 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:55 Download gff for
BO08945.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19538954..19539615 | 241..902 | 100 | <- | Minus |
arm_X | 19539666..19539818 | 88..240 | 100 | <- | Minus |
arm_X | 19539879..19539957 | 9..87 | 96 | | Minus |
BO08945.complete Sequence
1168 bp (1168 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631328
> BO08945.complete
GAAGTTATCAGTCGACATGCCCATTTACGAGAGCGTGATGCAGGAGAAGC
CGCCCATTGTCCTCGACATTGGCACCGCCTACACCAAGCTGGGATTCGCA
GCGGAGGCGTATCCGCGCAAGATCATGCCCACGGAGGTGGTGATGACCAC
GACGGGGATCCGGAAGCGTCTGTTCGACTACGACACTCCGGAGGAGCTGT
ACGACCAGCTAGTGGATTTTCTGCAGACGATCTTCTTCAAGCATCTACTG
GTCAGCCCCAAGGAGCGCAAGTTCGTGCTGGTGGAGAACGTGTTCGGATC
CACTGTGCTGCGTGAAACCTTGGCCCGCGTGCTCTTTGTCCACTTCGACG
TCTCCTCCGTGCTGTTCGTGCCCGTGCATCTCATTGCGCTGTCTACGCTG
GCAGTGCCCACTGCCCTTGTGGTGGACGTTGGCTACAGCGAGACCAGCGT
TATGCCCGTCTTCAGCGGGGTGCAAATCATGGCCGCCTTCAAGGATCAGA
GCTACGGAGGCAGCGCCATCCACGCGGAGATCAAGCGGCAGCTGGTTGAG
AGTGGCGTTAAGGAGAGCCTGCTAACAGAAAGCGTGCTGGAGGACATCAA
GGTGCGAACCTGCTTTGTGACCACCATGGAAAGAGCCAAGGCCCGCGCCA
ACGGCGACGAGAATCAGCCGACTCCCGCGCCAGACGTGGACTACATTGTC
AGCGACAACGATGCGGTCATCCAGGTGCCCGGCCTCCTGCGGGAGTCTGC
CTACGAGATCATGTTCGAGGCCAGCAACGAGCGGGACAGCCTGCCGCATC
TCATCCTGCGCTCCATTCTCGACTGCACACTAGACGTGCGACGTGCCCTG
GTCGAGAGTGTGTTCCTCGTGGGCGGCGGCTCAATGGTCCAGGGTCTGCT
GGCCCGCCTCCGCCAGGAGCTGCAGCATCTGCTCACCGAGGATCCGTTCT
ACGCCGAACGCTTCCATGGCGAGCTGCAGTTCAAGTTTTTCAATGCTGTC
GGCAAGCAAAACTTTACTGCCTGGCTGGGCGGCGCCTTGTGCGGCGCGAC
GGATCTCATCCAGACACGATCGCTGGTCAAGGAGACGTATCTAAAGAGCG
AGCACGTTCCCGACTGGAGCAACCTGTGCGATAATAGGCCGACAGGCTCG
GCAAGCTTTCTAGACCAT
BO08945.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:41:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp10-RB | 1137 | CG12235-PB | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Arp10-RA | 1137 | CG12235-PA | 1..1134 | 17..1150 | 5670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp10-RB | 1536 | CG12235-RB | 261..1394 | 17..1150 | 5670 | 100 | Plus |
Arp10-RA | 1374 | CG12235-RA | 99..1232 | 17..1150 | 5670 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:41:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19644673..19645582 | 1150..241 | 4550 | 100 | Minus |
X | 23542271 | X | 19645632..19645785 | 241..88 | 770 | 100 | Minus |
X | 23542271 | X | 19645845..19645916 | 88..17 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:41:25 has no hits.
BO08945.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:05 Download gff for
BO08945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp11-RA | 1..1137 | 17..1151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:07 Download gff for
BO08945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp11-RA | 123..1264 | 9..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:35:31 Download gff for
BO08945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp10-RA | 99..1232 | 17..1152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:05 Download gff for
BO08945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp11-RA | 123..1264 | 9..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:13 Download gff for
BO08945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp10-RA | 99..1232 | 17..1152 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:13 Download gff for
BO08945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19645846..19645916 | 17..87 | 100 | | Minus |
X | 19644671..19645582 | 241..1152 | 99 | <- | Minus |
X | 19645633..19645785 | 88..240 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:35:31 Download gff for
BO08945.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19539879..19539949 | 17..87 | 100 | | Minus |
arm_X | 19538704..19539615 | 241..1152 | 99 | <- | Minus |
arm_X | 19539666..19539818 | 88..240 | 100 | <- | Minus |
BO08945.pep Sequence
Translation from 16 to 1168
> BO08945.pep
MPIYESVMQEKPPIVLDIGTAYTKLGFAAEAYPRKIMPTEVVMTTTGIRK
RLFDYDTPEELYDQLVDFLQTIFFKHLLVSPKERKFVLVENVFGSTVLRE
TLARVLFVHFDVSSVLFVPVHLIALSTLAVPTALVVDVGYSETSVMPVFS
GVQIMAAFKDQSYGGSAIHAEIKRQLVESGVKESLLTESVLEDIKVRTCF
VTTMERAKARANGDENQPTPAPDVDYIVSDNDAVIQVPGLLRESAYEIMF
EASNERDSLPHLILRSILDCTLDVRRALVESVFLVGGGSMVQGLLARLRQ
ELQHLLTEDPFYAERFHGELQFKFFNAVGKQNFTAWLGGALCGATDLIQT
RSLVKETYLKSEHVPDWSNLCDNRPTGSASFLDH
BO08945.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp10-PB | 378 | CG12235-PB | 1..378 | 1..378 | 1921 | 100 | Plus |
Arp10-PA | 378 | CG12235-PA | 1..378 | 1..378 | 1921 | 100 | Plus |
Act57B-PA | 376 | CG10067-PA | 5..366 | 10..361 | 212 | 21.9 | Plus |
Act87E-PC | 376 | CG18290-PC | 5..366 | 10..361 | 210 | 21.6 | Plus |
Act87E-PB | 376 | CG18290-PB | 5..366 | 10..361 | 210 | 21.6 | Plus |