Clone BO08946 Report

Search the DGRC for BO08946

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCaf1-RA
Protein status:BO08946.pep: validated full length
Sequenced Size:1324

Clone Sequence Records

BO08946.3prime Sequence

845 bp (839 high quality bases) assembled on 2006-01-10

> BO08946.3prime
ATGGTCTAGAAAGCTTGCAGCGGTATTGGTTTCTAACTCGGAGGCGGGAA
TCTCTGGCTCCTCGTCGTTGTAAACATTCTCGGCCATCTGCCAGACCTGC
ATAATATTGTCCTCGGACACGGAGCAAATGATCCATGGCTCATTGGGGTT
CCACGAGAAATCGCTAATCTTGGCAGTGTGACCGCCATGGATGAAGAGCA
GCTCGGGTGGTCCGTCCTCAGCATCCTCCGTACTCTGCTCCTCGCCGATT
TTGGACAAATCCCAGACGTGTAGGCGGCGGTCAGTGCCGGAGGAGGCGAG
AATAGTCTCGTTATGCGGCGACCACTGCACTTGGAAGATCTCGTCCTTGT
GCGACTCGAAGGAATGTAGTTTTAGCTTGAGGTTGCGCAGATCCCATAGA
GCTACAGTCTTGTCAGCGGAGCCCGTGGCCAGAATGAACTCCGAGTAGGG
ATTAAAGCTCAAGCAATTGACTTCCGCTGTGTGAGCGTCCACTGTATGCG
AGGGCTTCGAGGTGTTGTTGTTGCGCGTGTCCCAGATCATCAGCTTCTGG
TCGTCAGCCACCGATCCGAACAGAGACTCATGTAGCAGATGCCAAGCCAC
GTCCTCAACAACGGCGGTGTGGCCGGTGAAGATGTTCTTGGCATCAATAA
CCCTATGCTCCTTGGGTGTGGCATTGATGTCCCACAAGCAGATGGTGTGA
TCATCAGAGGCTGACAGCAAATAGCCATTGAGGTTGGGATTCCAAGAGAG
TCCGTAGCCTTCCTTTTGATGACCGCGCAGCCGCAGGTCAGGCTGGCACT
CGCCAGACGGTTCCGGCTTGCTGGGATGCTTCGTGTAGTCGAAGA

BO08946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4236-PA 1293 Caf1-RA 464..1290 845..19 4135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:05
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1828 CG4236-RA 781..1607 845..19 4135 100 Minus
Caf1-RB 1825 CG4236-RB 778..1604 845..19 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15226636..15227343 726..19 3540 100 Minus
3R 32079331 3R 15226407..15226527 845..725 605 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:55:02 has no hits.

BO08946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:35 Download gff for BO08946.3prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-PA 465..1293 15..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:19 Download gff for BO08946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4236-PA 465..1293 15..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:02 Download gff for BO08946.3prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 779..1614 8..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:28 Download gff for BO08946.3prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RB 779..1614 8..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:28 Download gff for BO08946.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15226408..15226526 726..844 100 -> Minus
3R 15226637..15227353 8..725 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:02 Download gff for BO08946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11052130..11052248 726..844 100 -> Minus
arm_3R 11052359..11053075 8..725 99   Minus

BO08946.5prime Sequence

977 bp (814 high quality bases) assembled on 2006-01-10

> BO08946.5prime
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTATCCCTACTCGGAGTTCATTCTGGCCACG
GGCTCCGCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCCAGCT
AAAACTACATTCCCTCGAGTCGCACAA

BO08946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4236-PA 1293 Caf1-RA 1..856 17..872 4280 100 Plus
CG4236-PA 1293 Caf1-RA 857..962 872..977 480 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1828 CG4236-RA 313..1279 12..977 4765 99.6 Plus
Caf1-RB 1825 CG4236-RB 313..1276 12..977 4710 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15225965..15226527 38..600 2815 100 Plus
3R 32079331 3R 15226636..15227015 599..977 1820 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 11:56:03 has no hits.

BO08946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:36 Download gff for BO08946.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-PA 1..960 17..975 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:20 Download gff for BO08946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4236-PA 1..960 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:29:51 Download gff for BO08946.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 313..1277 12..975 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:05 Download gff for BO08946.5prime
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 313..1277 12..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:05 Download gff for BO08946.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15225888..15225914 12..38 96 -> Plus
3R 15225966..15226526 39..599 100 -> Plus
3R 15226637..15227013 600..975 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:29:51 Download gff for BO08946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11051610..11051636 12..38 96 -> Plus
arm_3R 11051688..11052248 39..599 100 -> Plus
arm_3R 11052359..11052735 600..975 99   Plus

BO08946.complete Sequence

1324 bp (1324 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631329

> BO08946.complete
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCAC
GGGCTCCGCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCAAGC
TAAAACTACATTCCTTCGAGTCGCACAAGGACGAGATCTTCCAAGTGCAG
TGGTCGCCGCATAACGAGACTATTCTCGCCTCCTCCGGCACTGACCGCCG
CCTACACGTCTGGGATTTGTCCAAAATCGGCGAGGAGCAGAGTACGGAGG
ATGCTGAGGACGGACCACCCGAGCTGCTCTTCATCCATGGCGGTCACACT
GCCAAGATTAGCGATTTCTCGTGGAACCCCAATGAGCCATGGATCATTTG
CTCCGTGTCCGAGGACAATATTATGCAGGTCTGGCAGATGGCCGAGAATG
TTTACAACGACGAGGAGCCAGAGATTCCCGCCTCCGAGTTAGAAACCAAT
ACCGCTGCAAGCTTTCTAGACCAT

BO08946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1293 CG4236-PA 1..1290 17..1306 6450 100 Plus
Caf1-RB 1290 CG4236-PB 1..1287 17..1306 6370 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-RA 1828 CG4236-RA 313..1607 12..1306 6460 99.9 Plus
Caf1-RB 1825 CG4236-RB 313..1604 12..1306 6380 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15226636..15227343 599..1306 3540 100 Plus
3R 32079331 3R 15225965..15226527 38..600 2815 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:19:06 has no hits.

BO08946.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:07 Download gff for BO08946.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 1..1293 17..1310 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:10 Download gff for BO08946.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 322..1626 12..1317 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:43 Download gff for BO08946.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 318..1607 17..1308 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:08 Download gff for BO08946.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 322..1626 12..1317 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:56 Download gff for BO08946.complete
Subject Subject Range Query Range Percent Splice Strand
Caf1-RA 318..1607 17..1308 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:56 Download gff for BO08946.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15225893..15225914 17..38 100 -> Plus
3R 15225966..15226526 39..599 100 -> Plus
3R 15226637..15227343 600..1308 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:43 Download gff for BO08946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11051615..11051636 17..38 100 -> Plus
arm_3R 11051688..11052248 39..599 100 -> Plus
arm_3R 11052359..11053065 600..1308 99   Plus

BO08946.pep Sequence

Translation from 16 to 1324

> BO08946.pep
MVDRSDNAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT
AQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGS
HYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPS
SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA
SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV
ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK
TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD
LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED
NIMQVWQMAENVYNDEEPEIPASELETNTAASFLDH

BO08946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
Caf1-PA 430 CG4236-PA 1..430 1..430 2327 100 Plus
Caf1-PB 429 CG4236-PB 1..429 1..430 2311 99.8 Plus
l(2)09851-PB 456 CG12792-PB 24..444 5..398 337 27.6 Plus
l(2)09851-PA 456 CG12792-PA 24..444 5..398 337 27.6 Plus
Pex7-PB 339 CG6486-PB 22..328 79..406 255 25.6 Plus