Clone Sequence Records
BO08946.3prime Sequence
845 bp (839 high quality bases) assembled on 2006-01-10
> BO08946.3prime
ATGGTCTAGAAAGCTTGCAGCGGTATTGGTTTCTAACTCGGAGGCGGGAA
TCTCTGGCTCCTCGTCGTTGTAAACATTCTCGGCCATCTGCCAGACCTGC
ATAATATTGTCCTCGGACACGGAGCAAATGATCCATGGCTCATTGGGGTT
CCACGAGAAATCGCTAATCTTGGCAGTGTGACCGCCATGGATGAAGAGCA
GCTCGGGTGGTCCGTCCTCAGCATCCTCCGTACTCTGCTCCTCGCCGATT
TTGGACAAATCCCAGACGTGTAGGCGGCGGTCAGTGCCGGAGGAGGCGAG
AATAGTCTCGTTATGCGGCGACCACTGCACTTGGAAGATCTCGTCCTTGT
GCGACTCGAAGGAATGTAGTTTTAGCTTGAGGTTGCGCAGATCCCATAGA
GCTACAGTCTTGTCAGCGGAGCCCGTGGCCAGAATGAACTCCGAGTAGGG
ATTAAAGCTCAAGCAATTGACTTCCGCTGTGTGAGCGTCCACTGTATGCG
AGGGCTTCGAGGTGTTGTTGTTGCGCGTGTCCCAGATCATCAGCTTCTGG
TCGTCAGCCACCGATCCGAACAGAGACTCATGTAGCAGATGCCAAGCCAC
GTCCTCAACAACGGCGGTGTGGCCGGTGAAGATGTTCTTGGCATCAATAA
CCCTATGCTCCTTGGGTGTGGCATTGATGTCCCACAAGCAGATGGTGTGA
TCATCAGAGGCTGACAGCAAATAGCCATTGAGGTTGGGATTCCAAGAGAG
TCCGTAGCCTTCCTTTTGATGACCGCGCAGCCGCAGGTCAGGCTGGCACT
CGCCAGACGGTTCCGGCTTGCTGGGATGCTTCGTGTAGTCGAAGA
BO08946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4236-PA | 1293 | Caf1-RA | 464..1290 | 845..19 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:55:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1828 | CG4236-RA | 781..1607 | 845..19 | 4135 | 100 | Minus |
Caf1-RB | 1825 | CG4236-RB | 778..1604 | 845..19 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15226636..15227343 | 726..19 | 3540 | 100 | Minus |
3R | 32079331 | 3R | 15226407..15226527 | 845..725 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:55:02 has no hits.
BO08946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:35 Download gff for
BO08946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-PA | 465..1293 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:19 Download gff for
BO08946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4236-PA | 465..1293 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:02:02 Download gff for
BO08946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RB | 779..1614 | 8..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:28 Download gff for
BO08946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RB | 779..1614 | 8..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:28 Download gff for
BO08946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15226408..15226526 | 726..844 | 100 | -> | Minus |
3R | 15226637..15227353 | 8..725 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:02:02 Download gff for
BO08946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11052130..11052248 | 726..844 | 100 | -> | Minus |
arm_3R | 11052359..11053075 | 8..725 | 99 | | Minus |
BO08946.5prime Sequence
977 bp (814 high quality bases) assembled on 2006-01-10
> BO08946.5prime
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTATCCCTACTCGGAGTTCATTCTGGCCACG
GGCTCCGCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCCAGCT
AAAACTACATTCCCTCGAGTCGCACAA
BO08946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4236-PA | 1293 | Caf1-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
CG4236-PA | 1293 | Caf1-RA | 857..962 | 872..977 | 480 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1828 | CG4236-RA | 313..1279 | 12..977 | 4765 | 99.6 | Plus |
Caf1-RB | 1825 | CG4236-RB | 313..1276 | 12..977 | 4710 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15225965..15226527 | 38..600 | 2815 | 100 | Plus |
3R | 32079331 | 3R | 15226636..15227015 | 599..977 | 1820 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:56:03 has no hits.
BO08946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:36 Download gff for
BO08946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-PA | 1..960 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:20 Download gff for
BO08946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4236-PA | 1..960 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:29:51 Download gff for
BO08946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 313..1277 | 12..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:05 Download gff for
BO08946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 313..1277 | 12..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:05 Download gff for
BO08946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15225888..15225914 | 12..38 | 96 | -> | Plus |
3R | 15225966..15226526 | 39..599 | 100 | -> | Plus |
3R | 15226637..15227013 | 600..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:29:51 Download gff for
BO08946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11051610..11051636 | 12..38 | 96 | -> | Plus |
arm_3R | 11051688..11052248 | 39..599 | 100 | -> | Plus |
arm_3R | 11052359..11052735 | 600..975 | 99 | | Plus |
BO08946.complete Sequence
1324 bp (1324 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631329
> BO08946.complete
GAAGTTATCAGTCGACATGGTGGATCGCAGCGATAATGCAGCGGAATCCT
TCGACGACGCCGTCGAGGAGCGCGTGATCAATGAGGAGTATAAGATTTGG
AAAAAGAACACGCCGTTCCTGTACGATCTGGTCATGACGCATGCCCTGGA
ATGGCCCTCGTTGACTGCCCAGTGGCTGCCGGACGTGACCAAGCAGGATG
GCAAGGACTACTCGGTACATCGTCTTATACTGGGCACACACACATCTGAC
GAGCAGAACCATCTACTCATCGCCAGCGTTCAGTTGCCCAGCGAGGATGC
CCAGTTCGATGGTTCGCACTACGATAACGAGAAGGGCGAGTTTGGAGGCT
TTGGATCGGTGTGCGGCAAAATCGAAATCGAGATTAAGATCAACCACGAG
GGCGAAGTGAACAGGGCCCGCTACATGCCCCAGAACGCCTGTGTAATCGC
CACCAAGACGCCGTCGAGTGATGTCCTGGTCTTCGACTACACGAAGCATC
CCAGCAAGCCGGAACCGTCTGGCGAGTGCCAGCCTGACCTGCGGCTGCGC
GGTCATCAAAAGGAAGGCTACGGACTCTCTTGGAATCCCAACCTCAATGG
CTATTTGCTGTCAGCCTCTGATGATCACACCATCTGCTTGTGGGACATCA
ATGCCACACCCAAGGAGCATAGGGTTATTGATGCCAAGAACATCTTCACC
GGCCACACCGCCGTTGTTGAGGACGTGGCTTGGCATCTGCTACATGAGTC
TCTGTTCGGATCGGTGGCTGACGACCAGAAGCTGATGATCTGGGACACGC
GCAACAACAACACCTCGAAGCCCTCGCATACAGTGGACGCTCACACAGCG
GAAGTCAATTGCTTGAGCTTTAATCCCTACTCGGAGTTCATTCTGGCCAC
GGGCTCCGCTGACAAGACTGTAGCTCTATGGGATCTGCGCAACCTCAAGC
TAAAACTACATTCCTTCGAGTCGCACAAGGACGAGATCTTCCAAGTGCAG
TGGTCGCCGCATAACGAGACTATTCTCGCCTCCTCCGGCACTGACCGCCG
CCTACACGTCTGGGATTTGTCCAAAATCGGCGAGGAGCAGAGTACGGAGG
ATGCTGAGGACGGACCACCCGAGCTGCTCTTCATCCATGGCGGTCACACT
GCCAAGATTAGCGATTTCTCGTGGAACCCCAATGAGCCATGGATCATTTG
CTCCGTGTCCGAGGACAATATTATGCAGGTCTGGCAGATGGCCGAGAATG
TTTACAACGACGAGGAGCCAGAGATTCCCGCCTCCGAGTTAGAAACCAAT
ACCGCTGCAAGCTTTCTAGACCAT
BO08946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1293 | CG4236-PA | 1..1290 | 17..1306 | 6450 | 100 | Plus |
Caf1-RB | 1290 | CG4236-PB | 1..1287 | 17..1306 | 6370 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-RA | 1828 | CG4236-RA | 313..1607 | 12..1306 | 6460 | 99.9 | Plus |
Caf1-RB | 1825 | CG4236-RB | 313..1604 | 12..1306 | 6380 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15226636..15227343 | 599..1306 | 3540 | 100 | Plus |
3R | 32079331 | 3R | 15225965..15226527 | 38..600 | 2815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:19:06 has no hits.
BO08946.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:07 Download gff for
BO08946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 1..1293 | 17..1310 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:10 Download gff for
BO08946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 322..1626 | 12..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:43 Download gff for
BO08946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 318..1607 | 17..1308 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:08 Download gff for
BO08946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 322..1626 | 12..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:56 Download gff for
BO08946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Caf1-RA | 318..1607 | 17..1308 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:56 Download gff for
BO08946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15225893..15225914 | 17..38 | 100 | -> | Plus |
3R | 15225966..15226526 | 39..599 | 100 | -> | Plus |
3R | 15226637..15227343 | 600..1308 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:43 Download gff for
BO08946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11051615..11051636 | 17..38 | 100 | -> | Plus |
arm_3R | 11051688..11052248 | 39..599 | 100 | -> | Plus |
arm_3R | 11052359..11053065 | 600..1308 | 99 | | Plus |
BO08946.pep Sequence
Translation from 16 to 1324
> BO08946.pep
MVDRSDNAAESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLT
AQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGS
HYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPS
SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA
SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV
ADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK
TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD
LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED
NIMQVWQMAENVYNDEEPEIPASELETNTAASFLDH
BO08946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Caf1-PA | 430 | CG4236-PA | 1..430 | 1..430 | 2327 | 100 | Plus |
Caf1-PB | 429 | CG4236-PB | 1..429 | 1..430 | 2311 | 99.8 | Plus |
l(2)09851-PB | 456 | CG12792-PB | 24..444 | 5..398 | 337 | 27.6 | Plus |
l(2)09851-PA | 456 | CG12792-PA | 24..444 | 5..398 | 337 | 27.6 | Plus |
Pex7-PB | 339 | CG6486-PB | 22..328 | 79..406 | 255 | 25.6 | Plus |