Clone Sequence Records
BO08951.3prime Sequence
913 bp (765 high quality bases) assembled on 2006-01-10
> BO08951.3prime
ATGGTCTAGAAAGCTTGCCGCAGTCGCCTCCAGCTTGGGCTGCTTGGGCA
GGTGCTCCACATCTCCATCATACTCATCCACTGCTTGTGGAGTGTCCTGT
TGGTCATCCTCCGCCTGTTGCTCCGACGCTTTGTGACGCTGTTTCTTGTT
CTGGTTACGATAGCTCTTGGGTAGTTTGTTGTCACCAATCATAATAGTGG
CTCTGGTTCCAGGTCCCCAATGTGGAGTCGGATTCTCTTGGAAGCGCGAT
AATGCCGATTTGCGACTCTTCGGGTTCGCCTCCGGATGGAGTTCATCGAA
CTCGTAGACAGCAGTGCATTCTTTCGAAAGTATGGCCGCCAGTGGAGATC
CAGGAATCATCCTTTCGGGATTTACCGGATGTCGCTTGCTCCAGCTGCGC
AGAATGTCCCATAGCACCGCTGGTGGAGCATTGGTTTTCAACGAATTCTT
CGAGGCATGCGAGTATGAGACTCGATAGCCAGCGTGGAGAATAGCAGACC
GGAACTTTAGCATGGGCACGATTTCTAGCTTGAGCACACAGCACAGTTTG
TCCGGCGTGTAGTAAAGGGGAACATCCTGCAGCTCCTCTTGGACCATGGA
AAGAACTCCAACGATTCGTCTCTGGGTTCCCAGCGATTGCAAGGTGGTCT
CCTGGACCGCCGTTAAAAGATCCTGCACAAATTCGGGGTTATGAATCGGT
GCCGACCAGATGGGTCCACCCAGATGATGCCTGTGACCGCAATGTTCGCA
CTGCGAGTTGACCGCCGGAACAGTGGGAATTCCGAACTTCAGCTGCTGGG
GATTACCAGCCGTGGGATTTGGCTTGGTTATGCCCAAGGGCTGCAGCGTG
AAGGTCTCACATCCGGTGCATTGGTATATCCAAGACTGCTTGCTCATCCA
CAGCTTGCATTGG
BO08951.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-PA | 1737 | CG6388-RA | 840..1734 | 913..19 | 4425 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1815 | CG6388-RA | 869..1763 | 913..19 | 4445 | 99.8 | Minus |
CG5435-RB | 929 | CG5435-RB | 787..929 | 19..161 | 715 | 100 | Plus |
CG5435-RA | 903 | CG5435-RA | 761..903 | 19..161 | 715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12429018..12429741 | 913..190 | 3590 | 99.7 | Minus |
2L | 23513712 | 2L | 12429798..12429969 | 190..19 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:09:44 has no hits.
BO08951.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:41 Download gff for
BO08951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 840..1737 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:27 Download gff for
BO08951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 840..1737 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:01 Download gff for
BO08951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 869..1763 | 19..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:28:20 Download gff for
BO08951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 869..1763 | 19..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:28:20 Download gff for
BO08951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12429018..12429740 | 191..913 | 99 | -> | Minus |
2L | 12429798..12429969 | 19..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:01 Download gff for
BO08951.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12429798..12429969 | 19..190 | 100 | | Minus |
arm_2L | 12429018..12429740 | 191..913 | 99 | -> | Minus |
BO08951.5prime Sequence
942 bp (838 high quality bases) assembled on 2006-01-10
> BO08951.5prime
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCCGGATGTGAGACCTTCACGCTGCAGCCCTTGGGCATAA
BO08951.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-PA | 1737 | CG6388-RA | 1..888 | 17..904 | 4440 | 100 | Plus |
CG6388-PA | 1737 | CG6388-RA | 887..925 | 904..942 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1815 | CG6388-RA | 30..954 | 17..942 | 4605 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12428139..12428598 | 40..499 | 2300 | 100 | Plus |
2L | 23513712 | 2L | 12428661..12429103 | 499..942 | 2170 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-13 02:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 356..412 | 186..241 | 129 | 71.9 | Plus |
BO08951.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:42 Download gff for
BO08951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 1..923 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:29 Download gff for
BO08951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-PA | 1..923 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:19:37 Download gff for
BO08951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 22..954 | 8..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:22:08 Download gff for
BO08951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 22..954 | 8..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:22:08 Download gff for
BO08951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12428049..12428083 | 8..43 | 91 | -> | Plus |
2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
2L | 12428661..12429103 | 499..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:19:37 Download gff for
BO08951.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12428049..12428083 | 8..43 | 91 | -> | Plus |
arm_2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
arm_2L | 12428661..12429103 | 499..942 | 99 | | Plus |
BO08951.complete Sequence
1768 bp assembled on 2007-10-05
GenBank Submission: FJ631330
> BO08951.complete
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCGGATGTGAGACCTTCACGCTGCAGCCCTTGGGCATAACCAAGCCAA
ATCCCACGGCTGGTAATCCCCAGCAGCTGAAGTTCGGAATTCCCACTGGT
CCGGCGGTCAACTCGCAGTGCGAACATTGCGGTCACAGGCATCATCTGGG
TGGACCCATCTGGTCGGCACCGATTCATAACCCCGAATTTGTGCAGGATC
TTTTAACGGCGGTCCAGGAGACCACCTTGCAATCGCTGGGAACCCAGAGA
CGAATCGTTGGAGTTCTTTCCATGGTCCAAGAGGAGCTGCAGGATGTTCC
CCTTTACTACACGCCGGACAAACTGTGCTGTGTGCTCAAGCTAGAAATCG
TGCCCATGCTAAAGTTCCGGTCTGCTATTCTCCACGCTGGCTATCGAGTC
TCATACTCGCATGCCTCGAAGAATTCGTTGAAAACCAATGCTCCACCAGC
GGTGCTATGGGACATTCTGCGCAGCTGGAGCAAGCGACATCCGGTAAATC
CCGAAAGGATGATTCCTGGATCTCCACTGGCGGCCATACTTTCGAAAGAA
TGCACTGCTGTCTACGAGTTCGATGAACTCCATCCGGAGGCGAACCCGAA
GAGTCGCAAATCGGCATTATCGCGCTTCCAAGAGAATCCGACTCCACATT
GGGGACCTGGAACCAGAGCCACTATTATGATTGGTGACAACAAACTACCC
AAGAGCTATCGTAACCAGAACAAGAAACAGCGTCACAAAGCGTCGGAGCA
ACAGGCGGAGGATGACCAACAGGACACTCCACAAGCAGTGGATGAGTATG
ATGGAGATGTGGAGCACCTGCCCAAGCAGCCCAAGCTGGAGGCGACTGCG
GCAAGCTTTCTAGACCAT
BO08951.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1737 | CG6388-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-RA | 1815 | CG6388-RA | 30..1763 | 17..1750 | 8670 | 100 | Plus |
CG5435-RB | 929 | CG5435-RB | 787..929 | 1750..1608 | 715 | 100 | Minus |
CG5435-RA | 903 | CG5435-RA | 761..903 | 1750..1608 | 715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12428661..12429741 | 499..1579 | 5405 | 100 | Plus |
2L | 23513712 | 2L | 12428139..12428598 | 40..499 | 2300 | 100 | Plus |
2L | 23513712 | 2L | 12429798..12429969 | 1579..1750 | 860 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 356..412 | 186..241 | 129 | 71.9 | Plus |
BO08951.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:09 Download gff for
BO08951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 1..1737 | 17..1753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:19 Download gff for
BO08951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 18..1759 | 8..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:12 Download gff for
BO08951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 30..1763 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:09 Download gff for
BO08951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 18..1759 | 8..1750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:43 Download gff for
BO08951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6388-RA | 30..1763 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:43 Download gff for
BO08951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12428057..12428083 | 17..43 | 100 | -> | Plus |
2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
2L | 12428661..12429740 | 499..1578 | 100 | -> | Plus |
2L | 12429798..12429969 | 1579..1752 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:12 Download gff for
BO08951.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12428057..12428083 | 17..43 | 100 | -> | Plus |
arm_2L | 12428143..12428597 | 44..498 | 100 | -> | Plus |
arm_2L | 12428661..12429740 | 499..1578 | 100 | -> | Plus |
arm_2L | 12429798..12429969 | 1579..1752 | 98 | | Plus |
BO08951.pep Sequence
Translation from 16 to 1768
> BO08951.pep
MEVDEEKPQIIAENPNENVIRERNAEIVSGGNVFYNPVQEFNRDLSIAAL
NVYRQRLTKERSEKALKKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDG
LRILEALAATGLRSIRYAQEIAGVRQIVANDLSRQAVASINTNIRHNKVE
ELIEPSHSDAMTLMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLVDGG
LLLVTATDMAVLAGNAPEACYVKYGSVPLRMKCCHEMALRILLHCIESHA
NRYGKYIEPLLSISADFYIRIFVRVYVGQAQCKLSMSKQSWIYQCTGCET
FTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGHRHHLGGPIWS
APIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLSMVQEELQDVPLYYTP
DKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVLWDI
LRSWSKRHPVNPERMIPGSPLAAILSKECTAVYEFDELHPEANPKSRKSA
LSRFQENPTPHWGPGTRATIMIGDNKLPKSYRNQNKKQRHKASEQQAEDD
QQDTPQAVDEYDGDVEHLPKQPKLEATAASFLDH
BO08951.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6388-PA | 578 | CG6388-PA | 1..578 | 1..578 | 3046 | 100 | Plus |