Clone BO08951 Report

Search the DGRC for BO08951

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG6388-RA
Protein status:BO08951.pep: validated full length
Sequenced Size:1768

Clone Sequence Records

BO08951.3prime Sequence

913 bp (765 high quality bases) assembled on 2006-01-10

> BO08951.3prime
ATGGTCTAGAAAGCTTGCCGCAGTCGCCTCCAGCTTGGGCTGCTTGGGCA
GGTGCTCCACATCTCCATCATACTCATCCACTGCTTGTGGAGTGTCCTGT
TGGTCATCCTCCGCCTGTTGCTCCGACGCTTTGTGACGCTGTTTCTTGTT
CTGGTTACGATAGCTCTTGGGTAGTTTGTTGTCACCAATCATAATAGTGG
CTCTGGTTCCAGGTCCCCAATGTGGAGTCGGATTCTCTTGGAAGCGCGAT
AATGCCGATTTGCGACTCTTCGGGTTCGCCTCCGGATGGAGTTCATCGAA
CTCGTAGACAGCAGTGCATTCTTTCGAAAGTATGGCCGCCAGTGGAGATC
CAGGAATCATCCTTTCGGGATTTACCGGATGTCGCTTGCTCCAGCTGCGC
AGAATGTCCCATAGCACCGCTGGTGGAGCATTGGTTTTCAACGAATTCTT
CGAGGCATGCGAGTATGAGACTCGATAGCCAGCGTGGAGAATAGCAGACC
GGAACTTTAGCATGGGCACGATTTCTAGCTTGAGCACACAGCACAGTTTG
TCCGGCGTGTAGTAAAGGGGAACATCCTGCAGCTCCTCTTGGACCATGGA
AAGAACTCCAACGATTCGTCTCTGGGTTCCCAGCGATTGCAAGGTGGTCT
CCTGGACCGCCGTTAAAAGATCCTGCACAAATTCGGGGTTATGAATCGGT
GCCGACCAGATGGGTCCACCCAGATGATGCCTGTGACCGCAATGTTCGCA
CTGCGAGTTGACCGCCGGAACAGTGGGAATTCCGAACTTCAGCTGCTGGG
GATTACCAGCCGTGGGATTTGGCTTGGTTATGCCCAAGGGCTGCAGCGTG
AAGGTCTCACATCCGGTGCATTGGTATATCCAAGACTGCTTGCTCATCCA
CAGCTTGCATTGG

BO08951.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 1737 CG6388-RA 840..1734 913..19 4425 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1815 CG6388-RA 869..1763 913..19 4445 99.8 Minus
CG5435-RB 929 CG5435-RB 787..929 19..161 715 100 Plus
CG5435-RA 903 CG5435-RA 761..903 19..161 715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12429018..12429741 913..190 3590 99.7 Minus
2L 23513712 2L 12429798..12429969 190..19 860 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:09:44 has no hits.

BO08951.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:41 Download gff for BO08951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 840..1737 16..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:27 Download gff for BO08951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 840..1737 16..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:03:01 Download gff for BO08951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 869..1763 19..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:28:20 Download gff for BO08951.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 869..1763 19..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:28:20 Download gff for BO08951.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12429018..12429740 191..913 99 -> Minus
2L 12429798..12429969 19..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:03:01 Download gff for BO08951.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12429798..12429969 19..190 100   Minus
arm_2L 12429018..12429740 191..913 99 -> Minus

BO08951.5prime Sequence

942 bp (838 high quality bases) assembled on 2006-01-10

> BO08951.5prime
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCCGGATGTGAGACCTTCACGCTGCAGCCCTTGGGCATAA

BO08951.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 1737 CG6388-RA 1..888 17..904 4440 100 Plus
CG6388-PA 1737 CG6388-RA 887..925 904..942 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1815 CG6388-RA 30..954 17..942 4605 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12428139..12428598 40..499 2300 100 Plus
2L 23513712 2L 12428661..12429103 499..942 2170 99.8 Plus
Blast to na_te.dros performed 2015-02-13 02:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 356..412 186..241 129 71.9 Plus

BO08951.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:42 Download gff for BO08951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 1..923 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:29 Download gff for BO08951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-PA 1..923 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:19:37 Download gff for BO08951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 22..954 8..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:22:08 Download gff for BO08951.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 22..954 8..942 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:22:08 Download gff for BO08951.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12428049..12428083 8..43 91 -> Plus
2L 12428143..12428597 44..498 100 -> Plus
2L 12428661..12429103 499..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:19:37 Download gff for BO08951.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12428049..12428083 8..43 91 -> Plus
arm_2L 12428143..12428597 44..498 100 -> Plus
arm_2L 12428661..12429103 499..942 99   Plus

BO08951.complete Sequence

1768 bp assembled on 2007-10-05

GenBank Submission: FJ631330

> BO08951.complete
GAAGTTATCAGTCGACATGGAAGTGGACGAGGAAAAGCCGCAGATTATTG
CTGAAAATCCCAACGAAAACGTGATACGCGAACGTAATGCGGAGATCGTT
TCCGGCGGCAATGTGTTCTACAATCCTGTCCAGGAATTCAATCGAGATCT
GAGCATTGCTGCTCTGAATGTTTATCGACAGAGATTGACCAAGGAGCGGA
GCGAAAAGGCGCTCAAAAAGCAGCGGAAGAAGGTCAAGGAACAGGAGGAT
GAGAAGACCACTCCCGTTCCCGAGGATCCACCTGTTTATGAGGCCGGTAC
TCGATATGAGGATGGACTTCGGATCCTGGAGGCACTGGCAGCCACCGGTT
TGCGTAGCATCCGTTACGCGCAGGAAATCGCCGGTGTACGCCAGATCGTG
GCCAACGATCTTTCCCGCCAGGCAGTGGCCTCGATCAACACAAACATCCG
GCACAACAAGGTGGAGGAGCTGATCGAGCCCAGTCACTCCGATGCAATGA
CCCTCATGTATCTTTCGACGCAACCCGAGAAGCGTTTTGATGCAGTTGAC
TTGGATCCGTACGGATGTCCCAATCGCTTTTTGGATGGCGCTATGCAGTG
CCTGGTGGACGGCGGCCTGCTGCTGGTGACAGCCACCGACATGGCCGTGC
TGGCCGGAAATGCTCCGGAAGCTTGCTATGTAAAATACGGATCGGTTCCG
CTGCGGATGAAGTGCTGTCACGAGATGGCATTGCGCATTTTGCTGCACTG
CATCGAGAGCCACGCGAACAGGTACGGCAAGTACATCGAACCACTACTGA
GCATATCAGCGGACTTTTACATCCGGATATTTGTGCGTGTGTACGTCGGC
CAGGCCCAATGCAAGCTGTCGATGAGCAAGCAGTCTTGGATATACCAATG
CACCGGATGTGAGACCTTCACGCTGCAGCCCTTGGGCATAACCAAGCCAA
ATCCCACGGCTGGTAATCCCCAGCAGCTGAAGTTCGGAATTCCCACTGGT
CCGGCGGTCAACTCGCAGTGCGAACATTGCGGTCACAGGCATCATCTGGG
TGGACCCATCTGGTCGGCACCGATTCATAACCCCGAATTTGTGCAGGATC
TTTTAACGGCGGTCCAGGAGACCACCTTGCAATCGCTGGGAACCCAGAGA
CGAATCGTTGGAGTTCTTTCCATGGTCCAAGAGGAGCTGCAGGATGTTCC
CCTTTACTACACGCCGGACAAACTGTGCTGTGTGCTCAAGCTAGAAATCG
TGCCCATGCTAAAGTTCCGGTCTGCTATTCTCCACGCTGGCTATCGAGTC
TCATACTCGCATGCCTCGAAGAATTCGTTGAAAACCAATGCTCCACCAGC
GGTGCTATGGGACATTCTGCGCAGCTGGAGCAAGCGACATCCGGTAAATC
CCGAAAGGATGATTCCTGGATCTCCACTGGCGGCCATACTTTCGAAAGAA
TGCACTGCTGTCTACGAGTTCGATGAACTCCATCCGGAGGCGAACCCGAA
GAGTCGCAAATCGGCATTATCGCGCTTCCAAGAGAATCCGACTCCACATT
GGGGACCTGGAACCAGAGCCACTATTATGATTGGTGACAACAAACTACCC
AAGAGCTATCGTAACCAGAACAAGAAACAGCGTCACAAAGCGTCGGAGCA
ACAGGCGGAGGATGACCAACAGGACACTCCACAAGCAGTGGATGAGTATG
ATGGAGATGTGGAGCACCTGCCCAAGCAGCCCAAGCTGGAGGCGACTGCG
GCAAGCTTTCTAGACCAT

BO08951.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1737 CG6388-PA 1..1734 17..1750 8670 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-RA 1815 CG6388-RA 30..1763 17..1750 8670 100 Plus
CG5435-RB 929 CG5435-RB 787..929 1750..1608 715 100 Minus
CG5435-RA 903 CG5435-RA 761..903 1750..1608 715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12428661..12429741 499..1579 5405 100 Plus
2L 23513712 2L 12428139..12428598 40..499 2300 100 Plus
2L 23513712 2L 12429798..12429969 1579..1750 860 100 Plus
Blast to na_te.dros performed 2014-11-27 10:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 356..412 186..241 129 71.9 Plus

BO08951.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:09 Download gff for BO08951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 1..1737 17..1753 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:18:19 Download gff for BO08951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 18..1759 8..1750 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:12 Download gff for BO08951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 30..1763 17..1752 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:09 Download gff for BO08951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 18..1759 8..1750 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:20:43 Download gff for BO08951.complete
Subject Subject Range Query Range Percent Splice Strand
CG6388-RA 30..1763 17..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:20:43 Download gff for BO08951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12428057..12428083 17..43 100 -> Plus
2L 12428143..12428597 44..498 100 -> Plus
2L 12428661..12429740 499..1578 100 -> Plus
2L 12429798..12429969 1579..1752 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:12 Download gff for BO08951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12428057..12428083 17..43 100 -> Plus
arm_2L 12428143..12428597 44..498 100 -> Plus
arm_2L 12428661..12429740 499..1578 100 -> Plus
arm_2L 12429798..12429969 1579..1752 98   Plus

BO08951.pep Sequence

Translation from 16 to 1768

> BO08951.pep
MEVDEEKPQIIAENPNENVIRERNAEIVSGGNVFYNPVQEFNRDLSIAAL
NVYRQRLTKERSEKALKKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDG
LRILEALAATGLRSIRYAQEIAGVRQIVANDLSRQAVASINTNIRHNKVE
ELIEPSHSDAMTLMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLVDGG
LLLVTATDMAVLAGNAPEACYVKYGSVPLRMKCCHEMALRILLHCIESHA
NRYGKYIEPLLSISADFYIRIFVRVYVGQAQCKLSMSKQSWIYQCTGCET
FTLQPLGITKPNPTAGNPQQLKFGIPTGPAVNSQCEHCGHRHHLGGPIWS
APIHNPEFVQDLLTAVQETTLQSLGTQRRIVGVLSMVQEELQDVPLYYTP
DKLCCVLKLEIVPMLKFRSAILHAGYRVSYSHASKNSLKTNAPPAVLWDI
LRSWSKRHPVNPERMIPGSPLAAILSKECTAVYEFDELHPEANPKSRKSA
LSRFQENPTPHWGPGTRATIMIGDNKLPKSYRNQNKKQRHKASEQQAEDD
QQDTPQAVDEYDGDVEHLPKQPKLEATAASFLDH

BO08951.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6388-PA 578 CG6388-PA 1..578 1..578 3046 100 Plus