Clone BO08954 Report

Search the DGRC for BO08954

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG5080-RA
Protein status:BO08954.pep: validated full length
Sequenced Size:1696

Clone Sequence Records

BO08954.3prime Sequence

966 bp (860 high quality bases) assembled on 2006-01-10

> BO08954.3prime
ATGGTCTAGAAAGCTTGCCTCCCGACCGGGCTCAGCGTGGCGCTTGGACA
GGAGATTGACGTCGGTCAGATACGTGTTCTTGTCGATGTTGTGCGGACCG
GGACCCGTGGGCATCCGCTCGTGGAGGCCGTGGAAGGAGTTGCGCAGATC
CTCGAGGGAGTCGGCCAGGCCCTTCTTGATGCTGGCGAACTCGGTGGACA
TGAGCGACAGCTTGCCCAGCAGATAGTTGAGGTTCTCGTCCATGTCGATC
ATGTGTTTCTTGGTCTCCTCCACGCGGCTGCCGAGACCCATCATGGTGAT
GAGAGTGCTGTTGTTGTAGCCATCGGAAGCGGACTGGATATCTCCGAGCA
TCAGCCGGCTCTGGCTGATCTCGCCGGCCATGATCTCGATGCGGTGCCAC
ACCTGGTTCAGCTCCGTTTCCAGCAGTCCGCTGATGTTCTTGTTCGCCTC
CTGCTGGATGCTCACCACCGCTCCGTCCAGCGACGAGAAGCGCTCCTTCA
GCAGTCCGCTCAGCGTGGCCATTTCCTCCGCCAGCAGCTTGCCAACCCGC
TGCACCACGTTCAGTGTGCCGAAGTCCACCTTGCGCTGCGTGTCCAGCAC
GACCTCCGAGTTGGTCATCATGATGTTGTTGAACTTACCGAGCGCTTCGA
GTCCCTCGTTCAGCTTGGCATTGCTCTCGTTAGTCGAGGCGAAGTGCTTG
TTGAGAATGCCCACGTCCGCGGACAGCTGGCGAACGTCCGCCTGGATGTT
GGCCTCCGCCTGCTGCAGTCGCTCCGTGGCCTCCGTCGCAGCTGACTTCT
GTTCCACCGAGGACTCGCTCTTCAGCTGCGCCAGCGCATTCAGGGTATCG
TTGTTCAGTTCCTGGATGTAGGCGCGATCCGTCTCGCTCAGGCCAACCGG
AGCAGCTGGTCGCTGCACAGTCTCGCTTAGAGAGCTCACCTGGGCGCCCA
GCGAGGTGAGACGCTC

BO08954.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-PB 1665 CG5080-RB 715..1662 966..19 4715 99.8 Minus
CG5080-PA 1665 CG5080-RA 715..1662 966..19 4715 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-RC 2350 CG5080-RC 1246..2193 966..19 4725 99.9 Minus
CG5080-RA 2617 CG5080-RA 1513..2460 966..19 4725 99.9 Minus
CG5080-RB 2007 CG5080-RB 903..1850 966..19 4725 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1160447..1161222 19..794 3880 100 Plus
2L 23513712 2L 1161290..1161464 792..966 860 99.4 Plus
Blast to na_te.dros performed 2015-02-11 17:25:42
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7590..7644 511..565 113 67.3 Plus

BO08954.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:45 Download gff for BO08954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-PA 715..1665 18..966 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:33 Download gff for BO08954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-PA 715..1665 18..966 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:09 Download gff for BO08954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 903..1856 13..966 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:35 Download gff for BO08954.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 903..1856 13..966 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:35 Download gff for BO08954.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1160441..1161219 13..791 99 <- Plus
2L 1161290..1161464 792..966 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:09 Download gff for BO08954.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1160441..1161219 13..791 99 <- Plus
arm_2L 1161290..1161464 792..966 99   Plus

BO08954.5prime Sequence

936 bp (811 high quality bases) assembled on 2006-01-10

> BO08954.5prime
GAAGTTATCAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTC
TCCTGGTCCTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTG
GTCTCCAACGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTA
CAATCAGCTGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGT
TGGGCGAGCTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAG
AGCCTGGAGCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAG
CCAGATAGAGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGT
CGGACCGCTTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAG
AACGACGAGTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCC
CCCAGCCGCGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATC
AGAAGCGCCTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCC
AGCGTGGCCGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCA
GAAGCGCCTCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCG
AAGCCAAGCTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCG
AAGAACGCTGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGG
CGGCCAGGTGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGG
TTGGCCTGAGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGAT
ACCCTGAATGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAG
TCAGCTGCGACGGAGGCCACGGAGCGACTGCAGCAG

BO08954.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-PB 1665 CG5080-RB 1..883 17..899 4415 100 Plus
CG5080-PA 1665 CG5080-RA 1..883 17..899 4415 100 Plus
CG5080-PB 1665 CG5080-RB 884..921 899..936 190 100 Plus
CG5080-PA 1665 CG5080-RA 884..921 899..936 190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-RC 2350 CG5080-RC 532..1452 17..936 4580 99.9 Plus
CG5080-RA 2617 CG5080-RA 799..1719 17..936 4580 99.9 Plus
CG5080-RB 2007 CG5080-RB 189..1109 17..936 4580 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1161296..1161870 899..325 2875 100 Minus
2L 23513712 2L 1161927..1162146 325..106 1100 100 Minus
2L 23513712 2L 1163000..1163088 105..17 445 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:52:48 has no hits.

BO08954.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:46 Download gff for BO08954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-PA 1..921 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:34 Download gff for BO08954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-PA 1..921 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:32 Download gff for BO08954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 185..1109 9..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:58 Download gff for BO08954.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 185..1109 9..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:58 Download gff for BO08954.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1161188..1161219 905..936 100 <- Minus
2L 1161290..1161869 326..904 99 <- Minus
2L 1161927..1162146 106..325 100 <- Minus
2L 1163000..1163092 9..105 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:32 Download gff for BO08954.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1161188..1161219 905..936 100 <- Minus
arm_2L 1161290..1161869 326..904 99 <- Minus
arm_2L 1161927..1162146 106..325 100 <- Minus
arm_2L 1163000..1163092 9..105 95   Minus

BO08954.complete Sequence

1696 bp (1696 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631331

> BO08954.complete
GAAGTTATCAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTC
TCCTGGTCCTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTG
GTCTCCAACGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTA
CAATCAGCTGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGT
TGGGCGAGCTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAG
AGCCTGGAGCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAG
CCAGATAGAGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGT
CGGACCGCTTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAG
AACGACGAGTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCC
CCCAGCCGCGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATC
AGAAGCGCCTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCC
AGCGTGGCCGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCA
GAAGCGCCTCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCG
AAGCCAAGCTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCG
AAGAACGCTGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGG
CGGCCAGGTGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGG
TTGGCCTGAGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGAT
ACCCTGAATGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAA
GTCAGCTGCGACGGAGGCCACGGAGCGACTGCAGCAGGCGGAGGCCAACA
TCCAGGCGGACGTTCGCCAGCTGTCCGCGGACGTGGGCATTCTCAACAAG
CACTTCGCCTCGACTAACGAGAGCAATGCCAAGCTGAACGAGGGACTCGA
AGCGCTCGGTAAGTTCAACAACATCATGATGACCAACTCGGAGGTCGTGC
TGGACACGCAGCGCAAGGTGGACTTCGGCACACTGAACGTGGTGCAGCGG
GTTGGCAAGCTGCTGGCGGAGGAAATGGCCACGCTGAGCGGACTGCTGAA
GGAGCGCTTCTCGTCGCTGGACGGAGCGGTGGTGAGCATCCAGCAGGAGG
CGAACAAGAACATCAGCGGACTGCTGGAAACGGAGCTGAACCAGGTGTGG
CACCGCATCGAGATCATGGCCGGCGAGATCAGCCAGAGCCGGCTGATGCT
CGGAGATATCCAGTCCGCTTCCGATGGCTACAACAACAGCACTCTCATCA
CCATGATGGGTCTCGGCAGCCGCGTGGAGGAGACCAAGAAACACATGATC
GACATGGACGAGAACCTCAACTATCTGCTGGGCAAGCTGTCGCTCATGTC
CACCGAGTTCGCCAGCATCAAGAAGGGCCTGGCCGACTCCCTCGAGGATC
TGCGCAACTCCTTCCACGGCCTCCACGAGCGGATGCCCACGGGTCCCGGT
CCGCACAACATCGACAAGAACACGTATCTGACCGACGTCAATCTCCTGTC
CAAGCGCCACGCTGAGCCCGGTCGGGAGGCAAGCTTTCTAGACCAT

BO08954.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-RC 1665 CG5080-PC 1..1662 17..1678 8310 100 Plus
CG5080-RA 1665 CG5080-PA 1..1662 17..1678 8310 100 Plus
CG5080-RB 1665 CG5080-PB 1..1662 17..1678 8310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-RC 2350 CG5080-RC 532..2193 17..1678 8310 100 Plus
CG5080-RA 2617 CG5080-RA 799..2460 17..1678 8310 100 Plus
CG5080-RB 2007 CG5080-RB 189..1850 17..1678 8310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1160447..1161222 1678..903 3880 100 Minus
2L 23513712 2L 1161290..1161870 905..325 2905 100 Minus
2L 23513712 2L 1161927..1162146 325..106 1100 100 Minus
2L 23513712 2L 1163000..1163088 105..17 445 100 Minus
Blast to na_te.dros performed 2014-11-27 06:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 7590..7644 1186..1132 113 67.3 Minus

BO08954.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:16 Download gff for BO08954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RA 1..1665 17..1679 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:21 Download gff for BO08954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RA 246..1917 9..1684 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:08 Download gff for BO08954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 189..1850 17..1680 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:16 Download gff for BO08954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RA 246..1917 9..1684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:17 Download gff for BO08954.complete
Subject Subject Range Query Range Percent Splice Strand
CG5080-RB 189..1850 17..1680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:17 Download gff for BO08954.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1160445..1161219 906..1680 99 <- Minus
2L 1161290..1161869 326..905 100 <- Minus
2L 1161927..1162146 106..325 100 <- Minus
2L 1163000..1163088 17..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:08 Download gff for BO08954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1160445..1161219 906..1680 99 <- Minus
arm_2L 1161290..1161869 326..905 100 <- Minus
arm_2L 1161927..1162146 106..325 100 <- Minus
arm_2L 1163000..1163088 17..105 100   Minus

BO08954.pep Sequence

Translation from 16 to 1696

> BO08954.pep
MAGGSRPLQLVLLVLVALAQWQPIAAGLVSNEELRGTIQSLIYSYNQLDN
KLERHEHRERALGELLKKALQSLQKGQKSLEPINGIFGRLDERVSQIETM
LITQEEKYNSQSDRFNQATEHMFKWMRENDECFKRPPVSANMIAPPAAAA
PPAIPKEFLEDQKRLNAKLLEEIQKLSASVAALKESSQKASDQTQKRLEG
LPKAPELLSQIEAKLQEHAASVTTAAPPKNAEFEAQLLERLTSLGGQVSS
LSETVQRPAAPVGLSETDRAYIQELNNDTLNALAQLKSESSVEQKSAATE
ATERLQQAEANIQADVRQLSADVGILNKHFASTNESNAKLNEGLEALGKF
NNIMMTNSEVVLDTQRKVDFGTLNVVQRVGKLLAEEMATLSGLLKERFSS
LDGAVVSIQQEANKNISGLLETELNQVWHRIEIMAGEISQSRLMLGDIQS
ASDGYNNSTLITMMGLGSRVEETKKHMIDMDENLNYLLGKLSLMSTEFAS
IKKGLADSLEDLRNSFHGLHERMPTGPGPHNIDKNTYLTDVNLLSKRHAE
PGREASFLDH

BO08954.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5080-PC 554 CG5080-PC 1..554 1..554 2754 100 Plus
CG5080-PA 554 CG5080-PA 1..554 1..554 2754 100 Plus
CG5080-PB 554 CG5080-PB 1..554 1..554 2754 100 Plus