Clone Sequence Records
BO08954.3prime Sequence
966 bp (860 high quality bases) assembled on 2006-01-10
> BO08954.3prime
ATGGTCTAGAAAGCTTGCCTCCCGACCGGGCTCAGCGTGGCGCTTGGACA
GGAGATTGACGTCGGTCAGATACGTGTTCTTGTCGATGTTGTGCGGACCG
GGACCCGTGGGCATCCGCTCGTGGAGGCCGTGGAAGGAGTTGCGCAGATC
CTCGAGGGAGTCGGCCAGGCCCTTCTTGATGCTGGCGAACTCGGTGGACA
TGAGCGACAGCTTGCCCAGCAGATAGTTGAGGTTCTCGTCCATGTCGATC
ATGTGTTTCTTGGTCTCCTCCACGCGGCTGCCGAGACCCATCATGGTGAT
GAGAGTGCTGTTGTTGTAGCCATCGGAAGCGGACTGGATATCTCCGAGCA
TCAGCCGGCTCTGGCTGATCTCGCCGGCCATGATCTCGATGCGGTGCCAC
ACCTGGTTCAGCTCCGTTTCCAGCAGTCCGCTGATGTTCTTGTTCGCCTC
CTGCTGGATGCTCACCACCGCTCCGTCCAGCGACGAGAAGCGCTCCTTCA
GCAGTCCGCTCAGCGTGGCCATTTCCTCCGCCAGCAGCTTGCCAACCCGC
TGCACCACGTTCAGTGTGCCGAAGTCCACCTTGCGCTGCGTGTCCAGCAC
GACCTCCGAGTTGGTCATCATGATGTTGTTGAACTTACCGAGCGCTTCGA
GTCCCTCGTTCAGCTTGGCATTGCTCTCGTTAGTCGAGGCGAAGTGCTTG
TTGAGAATGCCCACGTCCGCGGACAGCTGGCGAACGTCCGCCTGGATGTT
GGCCTCCGCCTGCTGCAGTCGCTCCGTGGCCTCCGTCGCAGCTGACTTCT
GTTCCACCGAGGACTCGCTCTTCAGCTGCGCCAGCGCATTCAGGGTATCG
TTGTTCAGTTCCTGGATGTAGGCGCGATCCGTCTCGCTCAGGCCAACCGG
AGCAGCTGGTCGCTGCACAGTCTCGCTTAGAGAGCTCACCTGGGCGCCCA
GCGAGGTGAGACGCTC
BO08954.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-PB | 1665 | CG5080-RB | 715..1662 | 966..19 | 4715 | 99.8 | Minus |
CG5080-PA | 1665 | CG5080-RA | 715..1662 | 966..19 | 4715 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-RC | 2350 | CG5080-RC | 1246..2193 | 966..19 | 4725 | 99.9 | Minus |
CG5080-RA | 2617 | CG5080-RA | 1513..2460 | 966..19 | 4725 | 99.9 | Minus |
CG5080-RB | 2007 | CG5080-RB | 903..1850 | 966..19 | 4725 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1160447..1161222 | 19..794 | 3880 | 100 | Plus |
2L | 23513712 | 2L | 1161290..1161464 | 792..966 | 860 | 99.4 | Plus |
Blast to na_te.dros performed 2015-02-11 17:25:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7590..7644 | 511..565 | 113 | 67.3 | Plus |
BO08954.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:45 Download gff for
BO08954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-PA | 715..1665 | 18..966 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:33 Download gff for
BO08954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-PA | 715..1665 | 18..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:09 Download gff for
BO08954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 903..1856 | 13..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:16:35 Download gff for
BO08954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 903..1856 | 13..966 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:16:35 Download gff for
BO08954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1160441..1161219 | 13..791 | 99 | <- | Plus |
2L | 1161290..1161464 | 792..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:09 Download gff for
BO08954.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1160441..1161219 | 13..791 | 99 | <- | Plus |
arm_2L | 1161290..1161464 | 792..966 | 99 | | Plus |
BO08954.5prime Sequence
936 bp (811 high quality bases) assembled on 2006-01-10
> BO08954.5prime
GAAGTTATCAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTC
TCCTGGTCCTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTG
GTCTCCAACGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTA
CAATCAGCTGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGT
TGGGCGAGCTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAG
AGCCTGGAGCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAG
CCAGATAGAGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGT
CGGACCGCTTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAG
AACGACGAGTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCC
CCCAGCCGCGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATC
AGAAGCGCCTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCC
AGCGTGGCCGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCA
GAAGCGCCTCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCG
AAGCCAAGCTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCG
AAGAACGCTGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGG
CGGCCAGGTGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGG
TTGGCCTGAGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGAT
ACCCTGAATGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAG
TCAGCTGCGACGGAGGCCACGGAGCGACTGCAGCAG
BO08954.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-PB | 1665 | CG5080-RB | 1..883 | 17..899 | 4415 | 100 | Plus |
CG5080-PA | 1665 | CG5080-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
CG5080-PB | 1665 | CG5080-RB | 884..921 | 899..936 | 190 | 100 | Plus |
CG5080-PA | 1665 | CG5080-RA | 884..921 | 899..936 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-RC | 2350 | CG5080-RC | 532..1452 | 17..936 | 4580 | 99.9 | Plus |
CG5080-RA | 2617 | CG5080-RA | 799..1719 | 17..936 | 4580 | 99.9 | Plus |
CG5080-RB | 2007 | CG5080-RB | 189..1109 | 17..936 | 4580 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1161296..1161870 | 899..325 | 2875 | 100 | Minus |
2L | 23513712 | 2L | 1161927..1162146 | 325..106 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 1163000..1163088 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:52:48 has no hits.
BO08954.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:46 Download gff for
BO08954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-PA | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:34 Download gff for
BO08954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-PA | 1..921 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:32 Download gff for
BO08954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 185..1109 | 9..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:58 Download gff for
BO08954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 185..1109 | 9..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:58 Download gff for
BO08954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1161188..1161219 | 905..936 | 100 | <- | Minus |
2L | 1161290..1161869 | 326..904 | 99 | <- | Minus |
2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
2L | 1163000..1163092 | 9..105 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:32 Download gff for
BO08954.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1161188..1161219 | 905..936 | 100 | <- | Minus |
arm_2L | 1161290..1161869 | 326..904 | 99 | <- | Minus |
arm_2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
arm_2L | 1163000..1163092 | 9..105 | 95 | | Minus |
BO08954.complete Sequence
1696 bp (1696 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631331
> BO08954.complete
GAAGTTATCAGTCGACATGGCCGGAGGAAGTCGCCCTCTCCAATTAGTTC
TCCTGGTCCTAGTTGCGCTCGCCCAATGGCAACCCATCGCCGCTGGATTG
GTCTCCAACGAGGAGCTGCGCGGAACTATCCAGTCGCTGATCTACTCCTA
CAATCAGCTGGACAATAAGCTGGAGCGGCACGAGCATCGCGAGCGTGCGT
TGGGCGAGCTGCTCAAGAAGGCGCTGCAGTCGCTCCAGAAGGGCCAGAAG
AGCCTGGAGCCCATCAATGGGATCTTCGGGCGCCTGGACGAGCGGGTCAG
CCAGATAGAGACCATGCTGATCACGCAAGAGGAGAAGTACAACTCGCAGT
CGGACCGCTTCAACCAGGCAACGGAGCACATGTTCAAGTGGATGCGGGAG
AACGACGAGTGCTTCAAGAGGCCGCCGGTCAGCGCCAACATGATCGCTCC
CCCAGCCGCGGCCGCCCCACCCGCCATTCCCAAGGAGTTCCTGGAGGATC
AGAAGCGCCTCAACGCCAAGCTGCTCGAGGAGATCCAGAAGTTGTCGGCC
AGCGTGGCCGCCCTCAAGGAGAGCAGCCAGAAGGCGTCCGATCAGACCCA
GAAGCGCCTCGAGGGTCTGCCCAAGGCACCGGAGCTGCTGTCCCAGATCG
AAGCCAAGCTGCAAGAGCACGCGGCCAGCGTGACCACCGCCGCTCCACCG
AAGAACGCTGAGTTCGAGGCCCAACTCCTGGAGCGTCTCACCTCGCTGGG
CGGCCAGGTGAGCTCTCTAAGCGAGACTGTGCAGCGACCAGCTGCTCCGG
TTGGCCTGAGCGAGACGGATCGCGCCTACATCCAGGAACTGAACAACGAT
ACCCTGAATGCGCTGGCGCAGCTGAAGAGCGAGTCCTCGGTGGAACAGAA
GTCAGCTGCGACGGAGGCCACGGAGCGACTGCAGCAGGCGGAGGCCAACA
TCCAGGCGGACGTTCGCCAGCTGTCCGCGGACGTGGGCATTCTCAACAAG
CACTTCGCCTCGACTAACGAGAGCAATGCCAAGCTGAACGAGGGACTCGA
AGCGCTCGGTAAGTTCAACAACATCATGATGACCAACTCGGAGGTCGTGC
TGGACACGCAGCGCAAGGTGGACTTCGGCACACTGAACGTGGTGCAGCGG
GTTGGCAAGCTGCTGGCGGAGGAAATGGCCACGCTGAGCGGACTGCTGAA
GGAGCGCTTCTCGTCGCTGGACGGAGCGGTGGTGAGCATCCAGCAGGAGG
CGAACAAGAACATCAGCGGACTGCTGGAAACGGAGCTGAACCAGGTGTGG
CACCGCATCGAGATCATGGCCGGCGAGATCAGCCAGAGCCGGCTGATGCT
CGGAGATATCCAGTCCGCTTCCGATGGCTACAACAACAGCACTCTCATCA
CCATGATGGGTCTCGGCAGCCGCGTGGAGGAGACCAAGAAACACATGATC
GACATGGACGAGAACCTCAACTATCTGCTGGGCAAGCTGTCGCTCATGTC
CACCGAGTTCGCCAGCATCAAGAAGGGCCTGGCCGACTCCCTCGAGGATC
TGCGCAACTCCTTCCACGGCCTCCACGAGCGGATGCCCACGGGTCCCGGT
CCGCACAACATCGACAAGAACACGTATCTGACCGACGTCAATCTCCTGTC
CAAGCGCCACGCTGAGCCCGGTCGGGAGGCAAGCTTTCTAGACCAT
BO08954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-RC | 1665 | CG5080-PC | 1..1662 | 17..1678 | 8310 | 100 | Plus |
CG5080-RA | 1665 | CG5080-PA | 1..1662 | 17..1678 | 8310 | 100 | Plus |
CG5080-RB | 1665 | CG5080-PB | 1..1662 | 17..1678 | 8310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-RC | 2350 | CG5080-RC | 532..2193 | 17..1678 | 8310 | 100 | Plus |
CG5080-RA | 2617 | CG5080-RA | 799..2460 | 17..1678 | 8310 | 100 | Plus |
CG5080-RB | 2007 | CG5080-RB | 189..1850 | 17..1678 | 8310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1160447..1161222 | 1678..903 | 3880 | 100 | Minus |
2L | 23513712 | 2L | 1161290..1161870 | 905..325 | 2905 | 100 | Minus |
2L | 23513712 | 2L | 1161927..1162146 | 325..106 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 1163000..1163088 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 06:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 7590..7644 | 1186..1132 | 113 | 67.3 | Minus |
BO08954.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:16 Download gff for
BO08954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RA | 1..1665 | 17..1679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:21 Download gff for
BO08954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RA | 246..1917 | 9..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:49:08 Download gff for
BO08954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 189..1850 | 17..1680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:16 Download gff for
BO08954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RA | 246..1917 | 9..1684 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:50:17 Download gff for
BO08954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5080-RB | 189..1850 | 17..1680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:50:17 Download gff for
BO08954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1160445..1161219 | 906..1680 | 99 | <- | Minus |
2L | 1161290..1161869 | 326..905 | 100 | <- | Minus |
2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
2L | 1163000..1163088 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:49:08 Download gff for
BO08954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1160445..1161219 | 906..1680 | 99 | <- | Minus |
arm_2L | 1161290..1161869 | 326..905 | 100 | <- | Minus |
arm_2L | 1161927..1162146 | 106..325 | 100 | <- | Minus |
arm_2L | 1163000..1163088 | 17..105 | 100 | | Minus |
BO08954.pep Sequence
Translation from 16 to 1696
> BO08954.pep
MAGGSRPLQLVLLVLVALAQWQPIAAGLVSNEELRGTIQSLIYSYNQLDN
KLERHEHRERALGELLKKALQSLQKGQKSLEPINGIFGRLDERVSQIETM
LITQEEKYNSQSDRFNQATEHMFKWMRENDECFKRPPVSANMIAPPAAAA
PPAIPKEFLEDQKRLNAKLLEEIQKLSASVAALKESSQKASDQTQKRLEG
LPKAPELLSQIEAKLQEHAASVTTAAPPKNAEFEAQLLERLTSLGGQVSS
LSETVQRPAAPVGLSETDRAYIQELNNDTLNALAQLKSESSVEQKSAATE
ATERLQQAEANIQADVRQLSADVGILNKHFASTNESNAKLNEGLEALGKF
NNIMMTNSEVVLDTQRKVDFGTLNVVQRVGKLLAEEMATLSGLLKERFSS
LDGAVVSIQQEANKNISGLLETELNQVWHRIEIMAGEISQSRLMLGDIQS
ASDGYNNSTLITMMGLGSRVEETKKHMIDMDENLNYLLGKLSLMSTEFAS
IKKGLADSLEDLRNSFHGLHERMPTGPGPHNIDKNTYLTDVNLLSKRHAE
PGREASFLDH
BO08954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5080-PC | 554 | CG5080-PC | 1..554 | 1..554 | 2754 | 100 | Plus |
CG5080-PA | 554 | CG5080-PA | 1..554 | 1..554 | 2754 | 100 | Plus |
CG5080-PB | 554 | CG5080-PB | 1..554 | 1..554 | 2754 | 100 | Plus |