Clone Sequence Records
BO08955.3prime Sequence
905 bp (840 high quality bases) assembled on 2006-01-10
> BO08955.3prime
ATGGTCTAGAAAGCTTGCGGTCCTGGGAAATTGCTTGTCGTACTGGCCGA
TGACGTACTTCAGCTTCCTGATGGCCAGGTCCACTTGCTCATCGTCCACC
TGATGGTAGAGCACAAGTCTCGCAAATGCCCAATCCCGGGCACTAGCCTT
CACCACGATTCCGGCTCCGTTTTTGTCCTTCACTCCGGCTTCCACTTCAC
CAGCATCAACGATGCTCAACCGGGTGGAGAACTCACTGGCCGTCAGTTTG
GGTTGGGTTATCTCTACCAGAAGGATATTGCTCTGGACAGACGACACGTG
TACGGTAATGTTGGGACTTTTCAGTTCATATATAGCGTTGGCAATTTTAT
TGGTCCGCTCGTGATCTTTGCTCAGAAGTGGTACCACTTCATCCAAAGCT
ACCAGTCCAGCTGCTGCTAACACTCCCACCTGCCGCATTCCGCCTCCCAA
AGCTTTGCGCAGTCGATGGGCTTCCGAAATGAAGGCCTTGGAGCCGACTA
ACACGGATCCCACGGGAGCCGATAAGCCCTTGCTGAGGCAGATAGATACC
GAATCGAAATCGCGGCAGATGCGCTCCACTCCCACGCCCAAGGCGGTGGC
CGCATTAAAGACCCTCGCTCCGTCCATGTGTAGAGCGATACGGGCGTTCC
CAGTGCCCACGCCCGGCTGTCGGACCAGAGCAGCTAGCTCATCCAAGAAG
GCCAGAGGCACCACTTTGCCACCGCAGATATTGTGGGTCTGCTCCACCAC
CACCAGCGAGGTGATGGGCTCGTGGCAGTCTTCGTGGCGTATCCTGCGGC
GCAGATCCTGCAGACTAAAGGTGCCATCCTGCTCGTTCTTCAGAGTGGCT
AATTGGACTCCGGCCAAATGCGAGGCGCCACCTTGTTCGTACAGAAAGAT
GTGCG
BO08955.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-PA | 1152 | CG10184-RA | 263..1149 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 349..1235 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603764 | 473..883 | 2055 | 100 | Plus |
3R | 32079331 | 3R | 23602602..23602919 | 19..336 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 23602977..23603113 | 336..472 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:37:04 has no hits.
BO08955.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:47 Download gff for
BO08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 263..1152 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:35 Download gff for
BO08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 263..1152 | 18..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:42:00 Download gff for
BO08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 349..1235 | 19..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:37 Download gff for
BO08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 349..1235 | 19..905 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:37 Download gff for
BO08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23602602..23602918 | 19..335 | 100 | <- | Plus |
3R | 23602977..23603113 | 336..472 | 100 | <- | Plus |
3R | 23603354..23603762 | 473..881 | 100 | <- | Plus |
3R | 23603828..23603851 | 882..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:42:00 Download gff for
BO08955.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19429076..19429484 | 473..881 | 100 | <- | Plus |
arm_3R | 19429550..19429573 | 882..905 | 100 | | Plus |
arm_3R | 19428324..19428640 | 19..335 | 100 | <- | Plus |
arm_3R | 19428699..19428835 | 336..472 | 100 | <- | Plus |
BO08955.5prime Sequence
811 bp (796 high quality bases) assembled on 2006-01-10
> BO08955.5prime
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTG
BO08955.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-PA | 1152 | CG10184-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 87..881 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603764 | 711..301 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 23604814..23605024 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 23603014..23603113 | 811..712 | 500 | 100 | Minus |
3R | 32079331 | 3R | 23603825..23603902 | 305..228 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:04:15 has no hits.
BO08955.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:48 Download gff for
BO08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:37 Download gff for
BO08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:53 Download gff for
BO08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..881 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:10 Download gff for
BO08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..881 | 17..811 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:10 Download gff for
BO08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23604814..23605030 | 9..227 | 98 | | Minus |
3R | 23603014..23603113 | 712..811 | 100 | <- | Minus |
3R | 23603354..23603762 | 303..711 | 100 | <- | Minus |
3R | 23603828..23603902 | 228..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:53 Download gff for
BO08955.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19428736..19428835 | 712..811 | 100 | <- | Minus |
arm_3R | 19429076..19429484 | 303..711 | 100 | <- | Minus |
arm_3R | 19429550..19429624 | 228..302 | 100 | <- | Minus |
arm_3R | 19430536..19430752 | 9..227 | 98 | | Minus |
BO08955.complete Sequence
1183 bp (1183 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631332
> BO08955.complete
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTGAGCAAAGATCACGAGCGGACCAATAAAATTGCCAACGCT
ATATATGAACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCA
GAGCAATATCCTTCTGGTAGAGATAACCCAACCCAAACTGACGGCCAGTG
AGTTCTCCACCCGGTTGAGCATCGTTGATGCTGGTGAAGTGGAAGCCGGA
GTGAAGGACAAAAACGGAGCCGGAATCGTGGTGAAGGCTAGTGCCCGGGA
TTGGGCATTTGCGAGACTTGTGCTCTACCATCAGGTGGACGATGAGCAAG
TGGACCTGGCCATCAGGAAGCTGAAGTACGTCATCGGCCAGTACGACAAG
CAATTTCCCAGGACCGCAAGCTTTCTAGACCAT
BO08955.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1152 | CG10184-PA | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-RA | 1330 | CG10184-RA | 87..1235 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23603354..23603764 | 711..301 | 2055 | 100 | Minus |
3R | 32079331 | 3R | 23602602..23602919 | 1165..848 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 23604814..23605024 | 227..17 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 23602977..23603113 | 848..712 | 685 | 100 | Minus |
3R | 32079331 | 3R | 23603825..23603902 | 305..228 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:12:22 has no hits.
BO08955.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:17 Download gff for
BO08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 1..1152 | 17..1166 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:23 Download gff for
BO08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 79..1227 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:28 Download gff for
BO08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1235 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:17 Download gff for
BO08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 79..1227 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:20 Download gff for
BO08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10184-RA | 87..1235 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:20 Download gff for
BO08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23604814..23605024 | 17..227 | 100 | | Minus |
3R | 23602600..23602918 | 849..1167 | 99 | <- | Minus |
3R | 23602977..23603113 | 712..848 | 100 | <- | Minus |
3R | 23603354..23603762 | 303..711 | 100 | <- | Minus |
3R | 23603828..23603902 | 228..302 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:28 Download gff for
BO08955.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19428322..19428640 | 849..1167 | 99 | <- | Minus |
arm_3R | 19428699..19428835 | 712..848 | 100 | <- | Minus |
arm_3R | 19429076..19429484 | 303..711 | 100 | <- | Minus |
arm_3R | 19429550..19429624 | 228..302 | 100 | <- | Minus |
arm_3R | 19430536..19430746 | 17..227 | 100 | | Minus |
BO08955.pep Sequence
Translation from 16 to 1183
> BO08955.pep
MTTHSVVDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAA
IFGKEAGLFVPSGTMGNLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASH
LAGVQLATLKNEQDGTFSLQDLRRRIRHEDCHEPITSLVVVEQTHNICGG
KVVPLAFLDELAALVRQPGVGTGNARIALHMDGARVFNAATALGVGVERI
CRDFDSVSICLSKGLSAPVGSVLVGSKAFISEAHRLRKALGGGMRQVGVL
AAAGLVALDEVVPLLSKDHERTNKIANAIYELKSPNITVHVSSVQSNILL
VEITQPKLTASEFSTRLSIVDAGEVEAGVKDKNGAGIVVKASARDWAFAR
LVLYHQVDDEQVDLAIRKLKYVIGQYDKQFPRTASFLDH
BO08955.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10184-PA | 383 | CG10184-PA | 1..383 | 1..383 | 1927 | 100 | Plus |