Clone BO08955 Report

Search the DGRC for BO08955

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG10184-RA
Protein status:BO08955.pep: validated full length
Sequenced Size:1183

Clone Sequence Records

BO08955.3prime Sequence

905 bp (840 high quality bases) assembled on 2006-01-10

> BO08955.3prime
ATGGTCTAGAAAGCTTGCGGTCCTGGGAAATTGCTTGTCGTACTGGCCGA
TGACGTACTTCAGCTTCCTGATGGCCAGGTCCACTTGCTCATCGTCCACC
TGATGGTAGAGCACAAGTCTCGCAAATGCCCAATCCCGGGCACTAGCCTT
CACCACGATTCCGGCTCCGTTTTTGTCCTTCACTCCGGCTTCCACTTCAC
CAGCATCAACGATGCTCAACCGGGTGGAGAACTCACTGGCCGTCAGTTTG
GGTTGGGTTATCTCTACCAGAAGGATATTGCTCTGGACAGACGACACGTG
TACGGTAATGTTGGGACTTTTCAGTTCATATATAGCGTTGGCAATTTTAT
TGGTCCGCTCGTGATCTTTGCTCAGAAGTGGTACCACTTCATCCAAAGCT
ACCAGTCCAGCTGCTGCTAACACTCCCACCTGCCGCATTCCGCCTCCCAA
AGCTTTGCGCAGTCGATGGGCTTCCGAAATGAAGGCCTTGGAGCCGACTA
ACACGGATCCCACGGGAGCCGATAAGCCCTTGCTGAGGCAGATAGATACC
GAATCGAAATCGCGGCAGATGCGCTCCACTCCCACGCCCAAGGCGGTGGC
CGCATTAAAGACCCTCGCTCCGTCCATGTGTAGAGCGATACGGGCGTTCC
CAGTGCCCACGCCCGGCTGTCGGACCAGAGCAGCTAGCTCATCCAAGAAG
GCCAGAGGCACCACTTTGCCACCGCAGATATTGTGGGTCTGCTCCACCAC
CACCAGCGAGGTGATGGGCTCGTGGCAGTCTTCGTGGCGTATCCTGCGGC
GCAGATCCTGCAGACTAAAGGTGCCATCCTGCTCGTTCTTCAGAGTGGCT
AATTGGACTCCGGCCAAATGCGAGGCGCCACCTTGTTCGTACAGAAAGAT
GTGCG

BO08955.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 1152 CG10184-RA 263..1149 905..19 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1330 CG10184-RA 349..1235 905..19 4435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23603354..23603764 473..883 2055 100 Plus
3R 32079331 3R 23602602..23602919 19..336 1590 100 Plus
3R 32079331 3R 23602977..23603113 336..472 685 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:37:04 has no hits.

BO08955.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:47 Download gff for BO08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 263..1152 18..905 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:35 Download gff for BO08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 263..1152 18..905 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:42:00 Download gff for BO08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 349..1235 19..905 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:37 Download gff for BO08955.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 349..1235 19..905 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:37 Download gff for BO08955.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23602602..23602918 19..335 100 <- Plus
3R 23602977..23603113 336..472 100 <- Plus
3R 23603354..23603762 473..881 100 <- Plus
3R 23603828..23603851 882..905 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:42:00 Download gff for BO08955.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19429076..19429484 473..881 100 <- Plus
arm_3R 19429550..19429573 882..905 100   Plus
arm_3R 19428324..19428640 19..335 100 <- Plus
arm_3R 19428699..19428835 336..472 100 <- Plus

BO08955.5prime Sequence

811 bp (796 high quality bases) assembled on 2006-01-10

> BO08955.5prime
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTG

BO08955.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 1152 CG10184-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1330 CG10184-RA 87..881 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23603354..23603764 711..301 2055 100 Minus
3R 32079331 3R 23604814..23605024 227..17 1055 100 Minus
3R 32079331 3R 23603014..23603113 811..712 500 100 Minus
3R 32079331 3R 23603825..23603902 305..228 390 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:04:15 has no hits.

BO08955.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:48 Download gff for BO08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:37 Download gff for BO08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:53 Download gff for BO08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..881 17..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:39:10 Download gff for BO08955.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..881 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:39:10 Download gff for BO08955.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23604814..23605030 9..227 98   Minus
3R 23603014..23603113 712..811 100 <- Minus
3R 23603354..23603762 303..711 100 <- Minus
3R 23603828..23603902 228..302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:53 Download gff for BO08955.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19428736..19428835 712..811 100 <- Minus
arm_3R 19429076..19429484 303..711 100 <- Minus
arm_3R 19429550..19429624 228..302 100 <- Minus
arm_3R 19430536..19430752 9..227 98   Minus

BO08955.complete Sequence

1183 bp (1183 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631332

> BO08955.complete
GAAGTTATCAGTCGACATGACCACCCATTCCGTTGTTGACCTGCGCTCGG
ACACCGTCAGCCAGCCGACGGACAAGATGCGGGCCCGGATGGCCACCGCC
GTGGTCGGGGATGACGTTTATGGCGAGGATCCCACCGTCAACGAACTGGA
GGCGCGAACAGCGGCCATTTTCGGCAAGGAGGCGGGCCTCTTTGTGCCCA
GCGGCACCATGGGAAATCTACTGGCAATTATGGTTCACTGCCATCGTCGT
GGCACGGAGGCCCTGGTCGGCGATTTATCGCACATCTTTCTGTACGAACA
AGGTGGCGCCTCGCATTTGGCCGGAGTCCAATTAGCCACTCTGAAGAACG
AGCAGGATGGCACCTTTAGTCTGCAGGATCTGCGCCGCAGGATACGCCAC
GAAGACTGCCACGAGCCCATCACCTCGCTGGTGGTGGTGGAGCAGACCCA
CAATATCTGCGGTGGCAAAGTGGTGCCTCTGGCCTTCTTGGATGAGCTAG
CTGCTCTGGTCCGACAGCCGGGCGTGGGCACTGGGAACGCCCGTATCGCT
CTACACATGGACGGAGCGAGGGTCTTTAATGCGGCCACCGCCTTGGGCGT
GGGAGTGGAGCGCATCTGCCGCGATTTCGATTCGGTATCTATCTGCCTCA
GCAAGGGCTTATCGGCTCCCGTGGGATCCGTGTTAGTCGGCTCCAAGGCC
TTCATTTCGGAAGCCCATCGACTGCGCAAAGCTTTGGGAGGCGGAATGCG
GCAGGTGGGAGTGTTAGCAGCAGCTGGACTGGTAGCTTTGGATGAAGTGG
TACCACTTCTGAGCAAAGATCACGAGCGGACCAATAAAATTGCCAACGCT
ATATATGAACTGAAAAGTCCCAACATTACCGTACACGTGTCGTCTGTCCA
GAGCAATATCCTTCTGGTAGAGATAACCCAACCCAAACTGACGGCCAGTG
AGTTCTCCACCCGGTTGAGCATCGTTGATGCTGGTGAAGTGGAAGCCGGA
GTGAAGGACAAAAACGGAGCCGGAATCGTGGTGAAGGCTAGTGCCCGGGA
TTGGGCATTTGCGAGACTTGTGCTCTACCATCAGGTGGACGATGAGCAAG
TGGACCTGGCCATCAGGAAGCTGAAGTACGTCATCGGCCAGTACGACAAG
CAATTTCCCAGGACCGCAAGCTTTCTAGACCAT

BO08955.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:12:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1152 CG10184-PA 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-RA 1330 CG10184-RA 87..1235 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23603354..23603764 711..301 2055 100 Minus
3R 32079331 3R 23602602..23602919 1165..848 1590 100 Minus
3R 32079331 3R 23604814..23605024 227..17 1055 100 Minus
3R 32079331 3R 23602977..23603113 848..712 685 100 Minus
3R 32079331 3R 23603825..23603902 305..228 390 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:12:22 has no hits.

BO08955.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:17 Download gff for BO08955.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 1..1152 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:23 Download gff for BO08955.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 79..1227 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:28 Download gff for BO08955.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..1235 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:17 Download gff for BO08955.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 79..1227 17..1165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:20 Download gff for BO08955.complete
Subject Subject Range Query Range Percent Splice Strand
CG10184-RA 87..1235 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:20 Download gff for BO08955.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23604814..23605024 17..227 100   Minus
3R 23602600..23602918 849..1167 99 <- Minus
3R 23602977..23603113 712..848 100 <- Minus
3R 23603354..23603762 303..711 100 <- Minus
3R 23603828..23603902 228..302 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:28 Download gff for BO08955.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19428322..19428640 849..1167 99 <- Minus
arm_3R 19428699..19428835 712..848 100 <- Minus
arm_3R 19429076..19429484 303..711 100 <- Minus
arm_3R 19429550..19429624 228..302 100 <- Minus
arm_3R 19430536..19430746 17..227 100   Minus

BO08955.pep Sequence

Translation from 16 to 1183

> BO08955.pep
MTTHSVVDLRSDTVSQPTDKMRARMATAVVGDDVYGEDPTVNELEARTAA
IFGKEAGLFVPSGTMGNLLAIMVHCHRRGTEALVGDLSHIFLYEQGGASH
LAGVQLATLKNEQDGTFSLQDLRRRIRHEDCHEPITSLVVVEQTHNICGG
KVVPLAFLDELAALVRQPGVGTGNARIALHMDGARVFNAATALGVGVERI
CRDFDSVSICLSKGLSAPVGSVLVGSKAFISEAHRLRKALGGGMRQVGVL
AAAGLVALDEVVPLLSKDHERTNKIANAIYELKSPNITVHVSSVQSNILL
VEITQPKLTASEFSTRLSIVDAGEVEAGVKDKNGAGIVVKASARDWAFAR
LVLYHQVDDEQVDLAIRKLKYVIGQYDKQFPRTASFLDH

BO08955.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10184-PA 383 CG10184-PA 1..383 1..383 1927 100 Plus