Clone Sequence Records
BO08958.3prime Sequence
629 bp (628 high quality bases) assembled on 2006-01-10
> BO08958.3prime
ATGGTCTAGAAAGCTTGCGGTGAAGCTGCAGCAGGAGTTAGTCTTTTTCG
CCGTCTTGTAGAACGCCTTGCTCTGCAGCGACAATTTCTCCGACTTGCTG
ACCATGTCGTCCAGCTTCTCGCCCCGCTCCAGCACCGCCTCGATGGTATT
CTTCAGTATGATCTTCGTTTCGTCCAGGTCGTTTTGCATTTTCGTCAGCG
GATCTGCTTCGACGGGATTTTGATAGCGTGCTAGAAACGCTGGCAGCAAG
TCAAATGAGATAGTGGCCTCCGTGCCATTGGGCCACTGATCGGCCGACAC
CTTGGCCGTAAAGTCATCCAGAATCTTTGTGATAAGCGTGTGCGCCACGC
GATGCGGATACTCATGATCGGCGATCAGTACACCGGCCAGATTGTCCGCC
CGCACATAGACATGACACATGTAGGCATCCTGTTTCACCGATTGCCGCAG
GGCCGGCTGTGTGCGCTCCACAATCGTCTTCGAAGCGAAAGTCATGAACT
CGTTGACGGTGCCACGTTGGAAAAAGGAGAAGGACTGCAGGTCCGAGGCG
GTCTTCAGGAGACGCGCCTCGCTGGCGCCCTTGTGAAAGATGCTCAACGC
GAATAGTTTGACCATGTCGACTGATAACT
BO08958.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1515-PA | 600 | l(1)G0155-RA | 1..597 | 615..19 | 2985 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 1469 | CG1515-RA | 268..864 | 615..19 | 2985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7920890..7921361 | 490..19 | 2360 | 100 | Minus |
| X | 23542271 | X | 7920676..7920800 | 615..491 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:51:54 has no hits.
BO08958.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:52 Download gff for
BO08958.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:43 Download gff for
BO08958.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 18..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 23:29:43 Download gff for
BO08958.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..864 | 19..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:30:00 Download gff for
BO08958.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..864 | 19..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:30:00 Download gff for
BO08958.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7920668..7920800 | 491..623 | 97 | -> | Minus |
| X | 7920890..7921361 | 19..490 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 23:29:43 Download gff for
BO08958.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7814701..7814833 | 491..623 | 97 | -> | Minus |
| arm_X | 7814923..7815394 | 19..490 | 100 | | Minus |
BO08958.5prime Sequence
629 bp (628 high quality bases) assembled on 2006-01-10
> BO08958.5prime
GAAGTTATCAGTCGACATGGTCAAACTATTCGCGTTGAGCATCTTTCACA
AGGGCGCCAGCGAGGCGCGTCTCCTGAAGACCGCCTCGGACCTGCAGTCC
TTCTCCTTTTTCCAACGTGGCACCGTCAACGAGTTCATGACTTTCGCTTC
GAAGACGATTGTGGAGCGCACACAGCCGGCCCTGCGGCAATCGGTGAAAC
AGGATGCCTACATGTGTCATGTCTATGTGCGGGCGGACAATCTGGCCGGT
GTACTGATCGCCGATCATGAGTATCCGCATCGCGTGGCGCACACGCTTAT
CACAAAGATTCTGGATGACTTTACGGCCAAGGTGTCGGCCGATCAGTGGC
CCAATGGCACGGAGGCCACTATCTCATTTGACTTGCTGCCAGCGTTTCTA
GCACGCTATCAAAATCCCGTCGAAGCAGATCCGCTGACGAAAATGCAAAA
CGACCTGGACGAAACGAAGATCATACTGAAGAATACCATCGAGGCGGTGC
TGGAGCGGGGCGAGAAGCTGGACGACATGGTCAGCAAGTCGGAGAAATTG
TCGCTGCAGAGCAAGGCGTTCTACAAGACGGCGAAAAAGACTAACTCCTG
CTGCAGCTTCACCGCAAGCTTTCTAGACC
BO08958.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1515-PA | 600 | l(1)G0155-RA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 1469 | CG1515-RA | 268..864 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7920890..7921361 | 142..613 | 2360 | 100 | Plus |
| X | 23542271 | X | 7920676..7920800 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:54:01 has no hits.
BO08958.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:53 Download gff for
BO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:44 Download gff for
BO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1515-PA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:15 Download gff for
BO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..864 | 9..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:50 Download gff for
BO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 260..864 | 9..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:50 Download gff for
BO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7920668..7920800 | 9..141 | 97 | -> | Plus |
| X | 7920890..7921361 | 142..613 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:15 Download gff for
BO08958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7814701..7814833 | 9..141 | 97 | -> | Plus |
| arm_X | 7814923..7815394 | 142..613 | 100 | | Plus |
BO08958.complete Sequence
631 bp (631 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631333
> BO08958.complete
GAAGTTATCAGTCGACATGGTCAAACTATTCGCGTTGAGCATCTTTCACA
AGGGCGCCAGCGAGGCGCGTCTCCTGAAGACCGCCTCGGACCTGCAGTCC
TTCTCCTTTTTCCAACGTGGCACCGTCAACGAGTTCATGACTTTCGCTTC
GAAGACGATTGTGGAGCGCACACAGCCGGCCCTGCGGCAATCGGTGAAAC
AGGATGCCTACATGTGTCATGTCTATGTGCGGGCGGACAATCTGGCCGGT
GTACTGATCGCCGATCATGAGTATCCGCATCGCGTGGCGCACACGCTTAT
CACAAAGATTCTGGATGACTTTACGGCCAAGGTGTCGGCCGATCAGTGGC
CCAATGGCACGGAGGCCACTATCTCATTTGACTTGCTGCCAGCGTTTCTA
GCACGCTATCAAAATCCCGTCGAAGCAGATCCGCTGACGAAAATGCAAAA
CGACCTGGACGAAACGAAGATCATACTGAAGAATACCATCGAGGCGGTGC
TGGAGCGGGGCGAGAAGCTGGACGACATGGTCAGCAAGTCGGAGAAATTG
TCGCTGCAGAGCAAGGCGTTCTACAAGACGGCGAAAAAGACTAACTCCTG
CTGCAGCTTCACCGCAAGCTTTCTAGACCAT
BO08958.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 600 | CG1515-PA | 1..597 | 17..613 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-RA | 1469 | CG1515-RA | 268..864 | 17..613 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7920890..7921361 | 142..613 | 2360 | 100 | Plus |
| X | 23542271 | X | 7920676..7920800 | 17..141 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:35:18 has no hits.
BO08958.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:18 Download gff for
BO08958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0155-RA | 1..600 | 17..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:25 Download gff for
BO08958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0155-RA | 208..812 | 9..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:29 Download gff for
BO08958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 268..864 | 17..615 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:18 Download gff for
BO08958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0155-RA | 208..812 | 9..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:27 Download gff for
BO08958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ykt6-RA | 268..864 | 17..615 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:27 Download gff for
BO08958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7920676..7920800 | 17..141 | 100 | -> | Plus |
| X | 7920890..7921361 | 142..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:29 Download gff for
BO08958.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7814709..7814833 | 17..141 | 100 | -> | Plus |
| arm_X | 7814923..7815394 | 142..615 | 99 | | Plus |
BO08958.pep Sequence
Translation from 16 to 631
> BO08958.pep
MVKLFALSIFHKGASEARLLKTASDLQSFSFFQRGTVNEFMTFASKTIVE
RTQPALRQSVKQDAYMCHVYVRADNLAGVLIADHEYPHRVAHTLITKILD
DFTAKVSADQWPNGTEATISFDLLPAFLARYQNPVEADPLTKMQNDLDET
KIILKNTIEAVLERGEKLDDMVSKSEKLSLQSKAFYKTAKKTNSCCSFTA
SFLDH
BO08958.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ykt6-PA | 199 | CG1515-PA | 1..199 | 1..199 | 1011 | 100 | Plus |
