Clone Sequence Records
BO08961.3prime Sequence
683 bp (682 high quality bases) assembled on 2006-01-10
> BO08961.3prime
ATGGTCTAGAAAGCTTGCGCGCAAAAGTTCGTTGCAATGCCTGGGGCGAT
TGGAGGCTTTCGCTTGAAGGTGGGCCTCCTCCAGCGATAGGATGCGGCAG
GGTCCAAAGGGACGTCTCACTGGACGTAAGGGTCGCAAGCCATCCACCTC
GTCCATGCCCTCGTTCTGACAGCCACCGTCGGTCGTTGTGGTTGTGGTGC
TGTCGTGCAGCTTTTGTTTTTGCAGCTTCTCGTGTCGCAGATACAAAACC
ACACAGCACATGGCCATAAACAGAAGGGCCAGCGTTGCTCCGCTAACAAT
GCTGGCCTTCTCTAGCATCACACGGTTCCTGGTTGGCAGGTACGAGCCAT
CAATCTCCTTGTACTCGCACCTCGGACCCATAAATCCCAGCGCACATTCG
CAGTTGTATAGGATTTCATTGTGGATCTTCACCGTAAAGCAGGTGCCATC
GTTCAGGCAATACCAGGCGACATAGGTCGGTGGACAGGCGAAGATCGGGA
AGGTGACATTCGGTCTCGGCGTTGTGGATATTTCCACATTATCCGGCGGC
AGGATCGGTGCAGCTGTTGGCCGCGGCTTAGCGATGGCACGCGAGGAACA
GGCGGCGGTGAGCGGTAGGTAAGCGCCGATTAAAGCGGTGGCAAGCAGCA
GCAGATCCTGGGCTCGCATGTCGACTGATAACT
BO08961.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32179-PA | 654 | Krn-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 1354 | CG32179-RA | 384..1034 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17649882..17650532 | 19..669 | 3255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:36:26 has no hits.
BO08961.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:54 Download gff for
BO08961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:45 Download gff for
BO08961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32179-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:41:55 Download gff for
BO08961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 12..683 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:16:33 Download gff for
BO08961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 12..683 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:16:33 Download gff for
BO08961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17649877..17650545 | 12..683 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:41:55 Download gff for
BO08961.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17642977..17643645 | 12..683 | 98 | | Plus |
BO08961.5prime Sequence
683 bp (682 high quality bases) assembled on 2006-01-10
> BO08961.5prime
GAAGTTATCAGTCGACATGCGAGCCCAGGATCTGCTGCTGCTTGCCACCG
CTTTAATCGGCGCTTACCTACCGCTCACCGCCGCCTGTTCCTCGCGTGCC
ATCGCTAAGCCGCGGCCAACAGCTGCACCGATCCTGCCGCCGGATAATGT
GGAAATATCCACAACGCCGAGACCGAATGTCACCTTCCCGATCTTCGCCT
GTCCACCGACCTATGTCGCCTGGTATTGCCTGAACGATGGCACCTGCTTT
ACGGTGAAGATCCACAATGAAATCCTATACAACTGCGAATGTGCGCTGGG
ATTTATGGGTCCGAGGTGCGAGTACAAGGAGATTGATGGCTCGTACCTGC
CAACCAGGAACCGTGTGATGCTAGAGAAGGCCAGCATTGTTAGCGGAGCA
ACGCTGGCCCTTCTGTTTATGGCCATGTGCTGTGTGGTTTTGTATCTGCG
ACACGAGAAGCTGCAAAAACAAAAGCTGCACGACAGCACCACAACCACAA
CGACCGACGGTGGCTGTCAGAACGAGGGCATGGACGAGGTGGATGGCTTG
CGACCCTTACGTCCAGTGAGACGTCCCTTTGGACCCTGCCGCATCCTATC
GCTGGAGGAGGCCCACCTTCAAGCGAAAGCCTCCAATCGCCCCAGGCATT
GCAACGAACTTTTGCGCGCAAGCTTTCTAGACC
BO08961.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32179-PA | 654 | Krn-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 1354 | CG32179-RA | 384..1034 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17649882..17650532 | 667..17 | 3255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:25:33 has no hits.
BO08961.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:55 Download gff for
BO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:47 Download gff for
BO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32179-PA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:40:48 Download gff for
BO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 3..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:29:22 Download gff for
BO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 371..1039 | 3..674 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:29:22 Download gff for
BO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17649877..17650545 | 3..674 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:40:48 Download gff for
BO08961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17642977..17643645 | 3..674 | 98 | | Minus |
BO08961.complete Sequence
685 bp (685 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631334
> BO08961.complete
GAAGTTATCAGTCGACATGCGAGCCCAGGATCTGCTGCTGCTTGCCACCG
CTTTAATCGGCGCTTACCTACCGCTCACCGCCGCCTGTTCCTCGCGTGCC
ATCGCTAAGCCGCGGCCAACAGCTGCACCGATCCTGCCGCCGGATAATGT
GGAAATATCCACAACGCCGAGACCGAATGTCACCTTCCCGATCTTCGCCT
GTCCACCGACCTATGTCGCCTGGTATTGCCTGAACGATGGCACCTGCTTT
ACGGTGAAGATCCACAATGAAATCCTATACAACTGCGAATGTGCGCTGGG
ATTTATGGGTCCGAGGTGCGAGTACAAGGAGATTGATGGCTCGTACCTGC
CAACCAGGAACCGTGTGATGCTAGAGAAGGCCAGCATTGTTAGCGGAGCA
ACGCTGGCCCTTCTGTTTATGGCCATGTGCTGTGTGGTTTTGTATCTGCG
ACACGAGAAGCTGCAAAAACAAAAGCTGCACGACAGCACCACAACCACAA
CGACCGACGGTGGCTGTCAGAACGAGGGCATGGACGAGGTGGATGGCTTG
CGACCCTTACGTCCAGTGAGACGTCCCTTTGGACCCTGCCGCATCCTATC
GCTGGAGGAGGCCCACCTTCAAGCGAAAGCCTCCAATCGCCCCAGGCATT
GCAACGAACTTTTGCGCGCAAGCTTTCTAGACCAT
BO08961.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 654 | CG32179-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-RA | 1354 | CG32179-RA | 384..1034 | 17..667 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17649882..17650532 | 667..17 | 3255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:23:46 has no hits.
BO08961.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:19 Download gff for
BO08961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 1..654 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:26 Download gff for
BO08961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 367..1035 | 3..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:30 Download gff for
BO08961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 384..1034 | 17..669 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:19 Download gff for
BO08961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 367..1035 | 3..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:36 Download gff for
BO08961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Krn-RA | 384..1034 | 17..669 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:36 Download gff for
BO08961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17649880..17650532 | 17..669 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:30 Download gff for
BO08961.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17642980..17643632 | 17..669 | 99 | | Minus |
BO08961.pep Sequence
Translation from 16 to 685
> BO08961.pep
MRAQDLLLLATALIGAYLPLTAACSSRAIAKPRPTAAPILPPDNVEISTT
PRPNVTFPIFACPPTYVAWYCLNDGTCFTVKIHNEILYNCECALGFMGPR
CEYKEIDGSYLPTRNRVMLEKASIVSGATLALLFMAMCCVVLYLRHEKLQ
KQKLHDSTTTTTTDGGCQNEGMDEVDGLRPLRPVRRPFGPCRILSLEEAH
LQAKASNRPRHCNELLRASFLDH
BO08961.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Krn-PA | 217 | CG32179-PA | 1..217 | 1..217 | 1162 | 100 | Plus |
| spi-PF | 234 | CG10334-PF | 11..176 | 8..156 | 404 | 50.6 | Plus |
| spi-PG | 234 | CG10334-PG | 11..176 | 8..156 | 404 | 50.6 | Plus |
| spi-PA | 234 | CG10334-PA | 11..176 | 8..156 | 404 | 50.6 | Plus |
| spi-PB | 234 | CG10334-PB | 11..176 | 8..156 | 404 | 50.6 | Plus |
