Clone Sequence Records
BO08962.3prime Sequence
862 bp (781 high quality bases) assembled on 2006-01-10
> BO08962.3prime
ATGGTCTAGAAAGCTTGCAACCACATTGTATTTGTGTTTCTTGCCAAAGA
CTTCTATGTCCACACTAAGTCCTCTGACATCCTCTTTATGTCTTCTTGAC
GTGATTTTCCCACAAATGACGTCTCCTTCCTTCACAACCTGCGGGTTCTC
GATGAAGAAAACCGTTTGCTTCCAATGGGTGGGCGTCGCAGATGGTGATG
TGCTGAACATGACGGGGGAGGGTAGTTCAAACAATGTTTCAAAGTAACCG
ACAAAGGCGGATAATCGTCCCGGCTTCGTGACCTTTAAGCTAAACTGGTG
AGTAAAGTTTGGATAGTTCATATCGACGGTCATTATGTCGAAGTTAGCTA
TCTGTTCGGGTTCCGTCAGCATGAACTCTGCATCCACCACCTGCATGAGT
GGCTCCTCTATTGATTGCTTTCGCAGATCGCTCATGTCGACCTCGTAAAC
GTTAGACCAGAATTCCACTTCATCGGCATAAAGCGTGTCGTCTCCATAGC
CCAAGAGACTGAGTGTACAGCGACTGGGCAGTATTATGCCATTGGGGTTG
AGGTGATTCTCGCGGGCGTAGATAATGCTGTCCAGCATTGATTCGTACAA
AAGAAAATAGCCCATCCATTCGGATATTATAATGTCGTATTTAGTCTCTG
GGAGATCTGTGTCCTCCAGCCGTCCCTTGATCAGTTCAACATTCTCAACC
TTGTTCTTCCTGATGATATCCATGGCGGTGTACACAATGTCCGAGTTATC
TATGCCGACAACGCGAGCTGCACCCGCTTTGGAGGCGAAGATGGATAGGA
TTCCCGTGCCGCATCCCACATCCAACACTGTCTTGCCCCGAACAACGGCC
TCGTTTTGGAGC
BO08962.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6563-PA | 1551 | Art3-RA | 705..1548 | 862..19 | 4220 | 100 | Minus |
CG6563-PB | 1425 | Art3-RB | 579..1422 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RB | 1804 | CG6563-RB | 912..1755 | 862..19 | 4220 | 100 | Minus |
Art3-RA | 1740 | CG6563-RA | 848..1691 | 862..19 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15227654..15228497 | 19..862 | 4220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:02:41 has no hits.
BO08962.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:56 Download gff for
BO08962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-PB | 579..1425 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:48 Download gff for
BO08962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6563-PB | 579..1425 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:20 Download gff for
BO08962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 848..1694 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:03 Download gff for
BO08962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 848..1694 | 15..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:03 Download gff for
BO08962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15227651..15228497 | 15..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:20 Download gff for
BO08962.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11053373..11054219 | 15..862 | 99 | | Plus |
BO08962.5prime Sequence
875 bp (870 high quality bases) assembled on 2006-01-10
> BO08962.5prime
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAGGA
BO08962.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6563-PA | 1551 | Art3-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
CG6563-PB | 1425 | Art3-RB | 1..733 | 143..875 | 3665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RA | 1740 | CG6563-RA | 143..1002 | 16..875 | 4300 | 100 | Plus |
Art3-RB | 1804 | CG6563-RB | 229..1066 | 38..875 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15228343..15229180 | 875..38 | 4190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:08:06 has no hits.
BO08962.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:57 Download gff for
BO08962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:50 Download gff for
BO08962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6563-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:14 Download gff for
BO08962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 143..1001 | 16..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:54 Download gff for
BO08962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 143..1001 | 16..874 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:54 Download gff for
BO08962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15228344..15229179 | 39..874 | 100 | <- | Minus |
3R | 15229244..15229266 | 16..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:14 Download gff for
BO08962.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11054066..11054901 | 39..874 | 100 | <- | Minus |
arm_3R | 11054966..11054988 | 16..38 | 100 | | Minus |
BO08962.complete Sequence
1582 bp (1582 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631335
> BO08962.complete
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAGGAAGAACAAGGTTGAGAATGTTGAACT
GATCAAGGGACGGCTGGAGGACACAGATCTCCCAGAGACTAAATACGACA
TTATAATATCCGAATGGATGGGCTATTTTCTTTTGTACGAATCAATGCTG
GACAGCATTATCTACGCCCGCGAGAATCACCTCAACCCCAATGGCATAAT
ACTGCCCAGTCGCTGTACACTCAGTCTCTTGGGCTATGGAGACGACACGC
TTTATGCCGATGAAGTGGAATTCTGGTCTAACGTTTACGAGGTCGACATG
AGCGATCTGCGAAAGCAATCAATAGAGGAGCCACTCATGCAGGTGGTGGA
TGCAGAGTTCATGCTGACGGAACCCGAACAGATAGCTAACTTCGACATAA
TGACCGTCGATATGAACTATCCAAACTTTACTCACCAGTTTAGCTTAAAG
GTCACGAAGCCGGGACGATTATCCGCCTTTGTCGGTTACTTTGAAACATT
GTTTGAACTACCCTCCCCCGTCATGTTCAGCACATCACCATCTGCGACGC
CCACCCATTGGAAGCAAACGGTTTTCTTCATCGAGAACCCGCAGGTTGTG
AAGGAAGGAGACGTCATTTGTGGGAAAATCACGTCAAGAAGACATAAAGA
GGATGTCAGAGGACTTAGTGTGGACATAGAAGTCTTTGGCAAGAAACACA
AATACAATGTGGTTGCAAGCTTTCTAGACCAT
BO08962.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RA | 1551 | CG6563-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Art3-RB | 1425 | CG6563-PB | 1..1422 | 143..1564 | 7110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-RA | 1740 | CG6563-RA | 143..1691 | 16..1564 | 7745 | 100 | Plus |
Art3-RB | 1804 | CG6563-RB | 229..1755 | 38..1564 | 7635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15227654..15229180 | 1564..38 | 7635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:27:45 has no hits.
BO08962.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:09 Download gff for
BO08962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 1..1551 | 17..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:12 Download gff for
BO08962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 174..1725 | 16..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:56 Download gff for
BO08962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 144..1691 | 17..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:09 Download gff for
BO08962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 174..1725 | 16..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:30 Download gff for
BO08962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Art3-RA | 144..1691 | 17..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:30 Download gff for
BO08962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15227652..15229179 | 39..1566 | 99 | <- | Minus |
3R | 15229244..15229265 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:56 Download gff for
BO08962.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11053374..11054901 | 39..1566 | 99 | <- | Minus |
arm_3R | 11054966..11054987 | 17..38 | 100 | | Minus |
BO08962.pep Sequence
Translation from 16 to 1582
> BO08962.pep
MKDTEVNDNTTEEEPVKEAPEVPANSSSDEDEYDDIDDDDEPMDEGDELT
TCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFIKLINYIRA
KKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDGAPTQPSVL
ELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSDQSVPRN
NVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVVRGKTVLDV
GCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVENVELIKGRL
EDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPNGIILPSRC
TLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQVVDAEFML
TEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYFETLFELPS
PVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRRHKEDVRGL
SVDIEVFGKKHKYNVVASFLDH
BO08962.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Art3-PA | 516 | CG6563-PA | 1..516 | 1..516 | 2698 | 100 | Plus |
Art3-PB | 474 | CG6563-PB | 1..474 | 43..516 | 2474 | 100 | Plus |
Art1-PA | 376 | CG6554-PA | 31..358 | 182..506 | 636 | 40.4 | Plus |
Art6-PA | 341 | CG9927-PA | 16..322 | 205..506 | 521 | 38.5 | Plus |
Art2-PB | 355 | CG3675-PB | 30..347 | 205..520 | 468 | 34.4 | Plus |