Clone BO08962 Report

Search the DGRC for BO08962

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptArt3-RA
Protein status:BO08962.pep: validated full length
Sequenced Size:1582

Clone Sequence Records

BO08962.3prime Sequence

862 bp (781 high quality bases) assembled on 2006-01-10

> BO08962.3prime
ATGGTCTAGAAAGCTTGCAACCACATTGTATTTGTGTTTCTTGCCAAAGA
CTTCTATGTCCACACTAAGTCCTCTGACATCCTCTTTATGTCTTCTTGAC
GTGATTTTCCCACAAATGACGTCTCCTTCCTTCACAACCTGCGGGTTCTC
GATGAAGAAAACCGTTTGCTTCCAATGGGTGGGCGTCGCAGATGGTGATG
TGCTGAACATGACGGGGGAGGGTAGTTCAAACAATGTTTCAAAGTAACCG
ACAAAGGCGGATAATCGTCCCGGCTTCGTGACCTTTAAGCTAAACTGGTG
AGTAAAGTTTGGATAGTTCATATCGACGGTCATTATGTCGAAGTTAGCTA
TCTGTTCGGGTTCCGTCAGCATGAACTCTGCATCCACCACCTGCATGAGT
GGCTCCTCTATTGATTGCTTTCGCAGATCGCTCATGTCGACCTCGTAAAC
GTTAGACCAGAATTCCACTTCATCGGCATAAAGCGTGTCGTCTCCATAGC
CCAAGAGACTGAGTGTACAGCGACTGGGCAGTATTATGCCATTGGGGTTG
AGGTGATTCTCGCGGGCGTAGATAATGCTGTCCAGCATTGATTCGTACAA
AAGAAAATAGCCCATCCATTCGGATATTATAATGTCGTATTTAGTCTCTG
GGAGATCTGTGTCCTCCAGCCGTCCCTTGATCAGTTCAACATTCTCAACC
TTGTTCTTCCTGATGATATCCATGGCGGTGTACACAATGTCCGAGTTATC
TATGCCGACAACGCGAGCTGCACCCGCTTTGGAGGCGAAGATGGATAGGA
TTCCCGTGCCGCATCCCACATCCAACACTGTCTTGCCCCGAACAACGGCC
TCGTTTTGGAGC

BO08962.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6563-PA 1551 Art3-RA 705..1548 862..19 4220 100 Minus
CG6563-PB 1425 Art3-RB 579..1422 862..19 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RB 1804 CG6563-RB 912..1755 862..19 4220 100 Minus
Art3-RA 1740 CG6563-RA 848..1691 862..19 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15227654..15228497 19..862 4220 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:02:41 has no hits.

BO08962.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:56 Download gff for BO08962.3prime
Subject Subject Range Query Range Percent Splice Strand
Art3-PB 579..1425 15..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:48 Download gff for BO08962.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6563-PB 579..1425 15..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:32:20 Download gff for BO08962.3prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 848..1694 15..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:42:03 Download gff for BO08962.3prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 848..1694 15..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:42:03 Download gff for BO08962.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15227651..15228497 15..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:32:20 Download gff for BO08962.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11053373..11054219 15..862 99   Plus

BO08962.5prime Sequence

875 bp (870 high quality bases) assembled on 2006-01-10

> BO08962.5prime
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAGGA

BO08962.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6563-PA 1551 Art3-RA 1..859 17..875 4295 100 Plus
CG6563-PB 1425 Art3-RB 1..733 143..875 3665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RA 1740 CG6563-RA 143..1002 16..875 4300 100 Plus
Art3-RB 1804 CG6563-RB 229..1066 38..875 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15228343..15229180 875..38 4190 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:08:06 has no hits.

BO08962.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:57 Download gff for BO08962.5prime
Subject Subject Range Query Range Percent Splice Strand
Art3-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:50 Download gff for BO08962.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6563-PA 1..858 17..874 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:14 Download gff for BO08962.5prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 143..1001 16..874 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:54 Download gff for BO08962.5prime
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 143..1001 16..874 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:54 Download gff for BO08962.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15228344..15229179 39..874 100 <- Minus
3R 15229244..15229266 16..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:14 Download gff for BO08962.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11054066..11054901 39..874 100 <- Minus
arm_3R 11054966..11054988 16..38 100   Minus

BO08962.complete Sequence

1582 bp (1582 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631335

> BO08962.complete
GAAGTTATCAGTCGACATGAAAGACACCGAGGTCAACGACAACACCACAG
AGGAGGAGCCCGTGAAGGAGGCACCTGAGGTGCCGGCCAATTCCAGCTCC
GACGAAGATGAGTACGATGACATAGATGACGATGATGAGCCAATGGACGA
AGGCGATGAGCTAACCACTTGTCTGTTTTGCACCGAAACATCTGCAAACA
TCTCGGTGGCCATTGACCATCTTGACGCCCGGCATAAAGTGAATCTGTCC
CAGCTTCAGCGTAAATTCGAAATGGACCAGTATTCCTTTATCAAACTGAT
AAACTACATAAGAGCCAAAAAGATCAGTGCCGAGCAGTTATTGTCTGCGG
AACATCCGCTTTGGCAGGATGAGAAGTACCTCCAGCCCGGGGAGTATGAG
CCCTGGCTCTGCTATGACTACGAAGTCCTTAAAACAGACGGCGCTCCGAC
GCAGCCCTCGGTTCTGGAGCTACAACAGCGGATTGCTGAGCAGTCGCAAT
TGCTGCAGCAGGCCAACGAGGACATGGAACGCATGCGCAACGACTACAAG
GCGCTGCTGCAAAAGGTACATGCTGACGGCGAGCCCAAAGGTTCCGACCA
GAGCGTACCGCGTAACAACGTTTGTCTCGACAACGAATACTTCAAAAGCT
ACGCCCACTTTGGCATTCACCATGAAATGCTCAGCGACAAGGTGCGGACC
AGCACCTATCGCGCGTCTTTGCTCCAAAACGAGGCCGTTGTTCGGGGCAA
GACAGTGTTGGATGTGGGATGCGGCACGGGAATCCTATCCATCTTCGCCT
CCAAAGCGGGTGCAGCTCGCGTTGTCGGCATAGATAACTCGGACATTGTG
TACACCGCCATGGATATCATCAGGAAGAACAAGGTTGAGAATGTTGAACT
GATCAAGGGACGGCTGGAGGACACAGATCTCCCAGAGACTAAATACGACA
TTATAATATCCGAATGGATGGGCTATTTTCTTTTGTACGAATCAATGCTG
GACAGCATTATCTACGCCCGCGAGAATCACCTCAACCCCAATGGCATAAT
ACTGCCCAGTCGCTGTACACTCAGTCTCTTGGGCTATGGAGACGACACGC
TTTATGCCGATGAAGTGGAATTCTGGTCTAACGTTTACGAGGTCGACATG
AGCGATCTGCGAAAGCAATCAATAGAGGAGCCACTCATGCAGGTGGTGGA
TGCAGAGTTCATGCTGACGGAACCCGAACAGATAGCTAACTTCGACATAA
TGACCGTCGATATGAACTATCCAAACTTTACTCACCAGTTTAGCTTAAAG
GTCACGAAGCCGGGACGATTATCCGCCTTTGTCGGTTACTTTGAAACATT
GTTTGAACTACCCTCCCCCGTCATGTTCAGCACATCACCATCTGCGACGC
CCACCCATTGGAAGCAAACGGTTTTCTTCATCGAGAACCCGCAGGTTGTG
AAGGAAGGAGACGTCATTTGTGGGAAAATCACGTCAAGAAGACATAAAGA
GGATGTCAGAGGACTTAGTGTGGACATAGAAGTCTTTGGCAAGAAACACA
AATACAATGTGGTTGCAAGCTTTCTAGACCAT

BO08962.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RA 1551 CG6563-PA 1..1548 17..1564 7740 100 Plus
Art3-RB 1425 CG6563-PB 1..1422 143..1564 7110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-RA 1740 CG6563-RA 143..1691 16..1564 7745 100 Plus
Art3-RB 1804 CG6563-RB 229..1755 38..1564 7635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15227654..15229180 1564..38 7635 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:27:45 has no hits.

BO08962.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:09 Download gff for BO08962.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 1..1551 17..1568 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:12 Download gff for BO08962.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 174..1725 16..1568 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:11:56 Download gff for BO08962.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 144..1691 17..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:09 Download gff for BO08962.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 174..1725 16..1568 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:30 Download gff for BO08962.complete
Subject Subject Range Query Range Percent Splice Strand
Art3-RA 144..1691 17..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:30 Download gff for BO08962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15227652..15229179 39..1566 99 <- Minus
3R 15229244..15229265 17..38 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:11:56 Download gff for BO08962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11053374..11054901 39..1566 99 <- Minus
arm_3R 11054966..11054987 17..38 100   Minus

BO08962.pep Sequence

Translation from 16 to 1582

> BO08962.pep
MKDTEVNDNTTEEEPVKEAPEVPANSSSDEDEYDDIDDDDEPMDEGDELT
TCLFCTETSANISVAIDHLDARHKVNLSQLQRKFEMDQYSFIKLINYIRA
KKISAEQLLSAEHPLWQDEKYLQPGEYEPWLCYDYEVLKTDGAPTQPSVL
ELQQRIAEQSQLLQQANEDMERMRNDYKALLQKVHADGEPKGSDQSVPRN
NVCLDNEYFKSYAHFGIHHEMLSDKVRTSTYRASLLQNEAVVRGKTVLDV
GCGTGILSIFASKAGAARVVGIDNSDIVYTAMDIIRKNKVENVELIKGRL
EDTDLPETKYDIIISEWMGYFLLYESMLDSIIYARENHLNPNGIILPSRC
TLSLLGYGDDTLYADEVEFWSNVYEVDMSDLRKQSIEEPLMQVVDAEFML
TEPEQIANFDIMTVDMNYPNFTHQFSLKVTKPGRLSAFVGYFETLFELPS
PVMFSTSPSATPTHWKQTVFFIENPQVVKEGDVICGKITSRRHKEDVRGL
SVDIEVFGKKHKYNVVASFLDH

BO08962.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Art3-PA 516 CG6563-PA 1..516 1..516 2698 100 Plus
Art3-PB 474 CG6563-PB 1..474 43..516 2474 100 Plus
Art1-PA 376 CG6554-PA 31..358 182..506 636 40.4 Plus
Art6-PA 341 CG9927-PA 16..322 205..506 521 38.5 Plus
Art2-PB 355 CG3675-PB 30..347 205..520 468 34.4 Plus