Clone Sequence Records
BO08963.3prime Sequence
910 bp (783 high quality bases) assembled on 2006-01-10
> BO08963.3prime
ATGGTCTAGAAAGCTTGCAATGATGGATATGTCCTTGACATCCTGCTTAA
GTTCGCTGTTATGGTTATTGGCAATAAAGTCGCGCCTTAAGGCGTTCCAA
TTCGGATCGGGATAATCCTTGAGGAGGCTCCAGTTCGGCGAGGGGACATC
CGGCGAAAGCCAGTTAAAATCGGCCACATCCGTATAGTTGTTCTGTGCCT
TATTCAGTCCAGAAGCTAGGTAGTCGGCCTCCAGTTTGGAATAATCGTAG
TTGTACTCTCCGATCTCAATACTCTTGCAATCCTCGATTATTGCGCGGCA
GGTGACATGCATGTATATGCGAATGGACCGGGAGGAGTGCAACCTCAACT
GCTGGCAGGCAATGGAGAGGGTGCAATCCTCGAGATTCTCGGCGAAGAAG
GAGCGTGCGATGGGGCCGCATAGCAGCGTGCATTTGGAGGCCCTGGAAAC
CTGCACAGAACCGGGATGACCCTGCAGTTCAACCAAACAGTGGTTCAGTT
TCGATATTGTGATGTCCTGGCCATTGACTTTAGCGGAATCCAGGACTATA
TGCTCGTTCGTTCGATTGGCAATCGTCCACGTGAAATTGGAGCCTAGTTT
TTCTGGGACTTTACTGAGTTTCGCGTCGACTATATCCTTATTTGGAGGGA
CTTTTGGCTTTGTGACGGTCTTTTTGCCACTGAAACCAAACTTTTTCTTG
GGCAACAGGCGCTGGCGGGTTTCATCACTGACGGCGGTCAGGGTGTTAAG
GATATTCTGACAGGATTTGATCTTGAAGTCGGGCAGAAACATGGTGGATG
CGGTGAGATATCGCTGCAGATCCTGGATCTCCACAGTTATGTCGGCGAAG
TTTCTGGCCAAATCGGTTGGCTGGCCATCGCCGCACTGCACATCCTTTAA
TCGCTGCTCT
BO08963.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-PA | 1068 | CG31961-RA | 174..1065 | 910..19 | 4460 | 100 | Minus |
| CG31961-PB | 1068 | CG31961-RB | 174..1065 | 910..19 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1477 | CG31961-RB | 417..1308 | 910..19 | 4460 | 100 | Minus |
| CG31961-RA | 1333 | CG31961-RA | 273..1164 | 910..19 | 4460 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4186419..4187310 | 19..910 | 4460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:55:51 has no hits.
BO08963.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:58 Download gff for
BO08963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PA | 174..1068 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:51 Download gff for
BO08963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PB | 174..1068 | 18..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:38:48 Download gff for
BO08963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 273..1164 | 19..910 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:26 Download gff for
BO08963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 273..1164 | 19..910 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:26 Download gff for
BO08963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4186419..4187310 | 19..910 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:38:48 Download gff for
BO08963.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4186419..4187310 | 19..910 | 100 | | Plus |
BO08963.5prime Sequence
895 bp (821 high quality bases) assembled on 2006-01-10
> BO08963.5prime
GAAGTTATCAGTCGACATGGAAGGCGACGCGGAAAATCGCAAGGATCAAA
TCCTCGAGCGTTTGAACAAAAGAAACAAGGACAGGCAAAACTATTTGGAT
GTGAAATCGGAGCTGCGTTCCAAGGAAACAGTGCAGAACGAGGGCGTTGA
CTACTTCTACCAGACTTTCAGCCAAAAAACCATGGATATAGAGCAGCGAT
TAAAGGATGTGCAGTGCGGCGATGGCCAGCCAACCGATTTGGCCAGAAAC
TTCGCCGACATAACTGTGGAGATCCAGGATCTGCAGCGATATCTCACCGC
ATCCACCATGTTTCTGCCCGACTTCAAGATCAAATCCTGTCAGAATATCC
TTAACACCCTGACCGCCGTCAGTGATGAAACCCGCCAGCGCCTGTTGCCC
AAGAAAAAGTTTGGTTTCAGTGGCAAAAAGACCGTCACAAAGCCAAAAGT
CCCTCCAAATAAGGATATAGTCGACGCGAAACTCAGTAAAGTCCCAGAAA
AACTAGGCTCCAATTTCACGTGGACGATTGCCAATCGAACGAACGAGCAT
ATAGTCCTGGATTCCGCTAAAGTCAATGGCCAGGACATCACAATATCGAA
ACTGAACCACTGTTTGGTTGAACTGCAGGGTCATCCCGGTTCTGTGCAGG
TTTCCAGGGCCTCCAAATGCACGCTGCTATGCGGCCCCATCGCACGCTCC
TTCTTCGCCGAGAATCTCGAGGATTGCACCCTCTCCATTGCCTGCCAGCA
GTTGAGGTTGCACTCCTCCCGGTCCATTCGCATATACATGCATGTCACCT
GCCGCGCAATAATCGAGGATTGCAAGAGTATTGAGATCGGAGAGTACAAC
TACGATTATTTCAAACTGGAGGCCGACTACCTAGCTTCTGGACTG
BO08963.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-PA | 1068 | CG31961-RA | 1..879 | 17..895 | 4370 | 99.8 | Plus |
| CG31961-PB | 1068 | CG31961-RB | 1..879 | 17..895 | 4370 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:59:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1477 | CG31961-RB | 243..1122 | 16..895 | 4385 | 99.9 | Plus |
| CG31961-RA | 1333 | CG31961-RA | 99..978 | 16..895 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4186605..4187484 | 895..16 | 4385 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:59:10 has no hits.
BO08963.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:57:59 Download gff for
BO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PA | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:56:52 Download gff for
BO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-PB | 1..879 | 17..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:26:01 Download gff for
BO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 99..978 | 16..895 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:35:38 Download gff for
BO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 99..978 | 16..895 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:35:38 Download gff for
BO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4186605..4187484 | 16..895 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:26:01 Download gff for
BO08963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4186605..4187484 | 16..895 | 99 | | Minus |
BO08963.complete Sequence
1099 bp (1099 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631336
> BO08963.complete
GAAGTTATCAGTCGACATGGAAGGCGACGCGGAAAATCGCAAGGATCAAA
TCCTCGAGCGTTTGAACAAAAGAAACAAGGACAGGCAAAACTATTTGGAT
GTGAAATCGGAGCTGCGTTCCAAGGAAACAGTGCAGAACGAGGGCGTTGA
CTACTTCTACCAGACTTTCAGCCAAAAAACCATGGATATAGAGCAGCGAT
TAAAGGATGTGCAGTGCGGCGATGGCCAGCCAACCGATTTGGCCAGAAAC
TTCGCCGACATAACTGTGGAGATCCAGGATCTGCAGCGATATCTCACCGC
ATCCACCATGTTTCTGCCCGACTTCAAGATCAAATCCTGTCAGAATATCC
TTAACACCCTGACCGCCGTCAGTGATGAAACCCGCCAGCGCCTGTTGCCC
AAGAAAAAGTTTGGTTTCAGTGGCAAAAAGACCGTCACAAAGCCAAAAGT
CCCTCCAAATAAGGATATAGTCGACGCGAAACTCAGTAAAGTCCCAGAAA
AACTAGGCTCCAATTTCACGTGGACGATTGCCAATCGAACGAACGAGCAT
ATAGTCCTGGATTCCGCTAAAGTCAATGGCCAGGACATCACAATATCGAA
ACTGAACCACTGTTTGGTTGAACTGCAGGGTCATCCCGGTTCTGTGCAGG
TTTCCAGGGCCTCCAAATGCACGCTGCTATGCGGCCCCATCGCACGCTCC
TTCTTCGCCGAGAATCTCGAGGATTGCACCCTCTCCATTGCCTGCCAGCA
GTTGAGGTTGCACTCCTCCCGGTCCATTCGCATATACATGCATGTCACCT
GCCGCGCAATAATCGAGGATTGCAAGAGTATTGAGATCGGAGAGTACAAC
TACGATTATTCCAAACTGGAGGCCGACTACCTAGCTTCTGGACTGAATAA
GGCACAGAACAACTATACGGATGTGGCCGATTTTAACTGGCTTTCGCCGG
ATGTCCCCTCGCCGAACTGGAGCCTCCTCAAGGATTATCCCGATCCGAAT
TGGAACGCCTTAAGGCGCGACTTTATTGCCAATAACCATAACAGCGAACT
TAAGCAGGATGTCAAGGACATATCCATCATTGCAAGCTTTCTAGACCAT
BO08963.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1068 | CG31961-PB | 1..1065 | 17..1081 | 5325 | 100 | Plus |
| CG31961-RA | 1068 | CG31961-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-RB | 1477 | CG31961-RB | 243..1308 | 16..1081 | 5330 | 100 | Plus |
| CG31961-RA | 1333 | CG31961-RA | 99..1164 | 16..1081 | 5330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4186419..4187484 | 1081..16 | 5330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:30:07 has no hits.
BO08963.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:10 Download gff for
BO08963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RB | 1..1068 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:14 Download gff for
BO08963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RB | 239..1304 | 16..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:53 Download gff for
BO08963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 100..1164 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:10 Download gff for
BO08963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RB | 239..1304 | 16..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:54 Download gff for
BO08963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31961-RA | 100..1164 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:54 Download gff for
BO08963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4186417..4187483 | 17..1083 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:53 Download gff for
BO08963.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4186417..4187483 | 17..1083 | 99 | | Minus |
BO08963.pep Sequence
Translation from 16 to 1099
> BO08963.pep
MEGDAENRKDQILERLNKRNKDRQNYLDVKSELRSKETVQNEGVDYFYQT
FSQKTMDIEQRLKDVQCGDGQPTDLARNFADITVEIQDLQRYLTASTMFL
PDFKIKSCQNILNTLTAVSDETRQRLLPKKKFGFSGKKTVTKPKVPPNKD
IVDAKLSKVPEKLGSNFTWTIANRTNEHIVLDSAKVNGQDITISKLNHCL
VELQGHPGSVQVSRASKCTLLCGPIARSFFAENLEDCTLSIACQQLRLHS
SRSIRIYMHVTCRAIIEDCKSIEIGEYNYDYSKLEADYLASGLNKAQNNY
TDVADFNWLSPDVPSPNWSLLKDYPDPNWNALRRDFIANNHNSELKQDVK
DISIIASFLDH
BO08963.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31961-PB | 355 | CG31961-PB | 1..355 | 1..355 | 1862 | 100 | Plus |
| CG31961-PA | 355 | CG31961-PA | 1..355 | 1..355 | 1862 | 100 | Plus |
