Clone Sequence Records
BO08967.3prime Sequence
883 bp (879 high quality bases) assembled on 2006-01-10
> BO08967.3prime
ATGGTCTAGAAAGCTTGCCGTGAACGGTGGCGGCATAACCATCGGATCGA
AGGTCTGCTGGGTGGTGGAGAAGTTGTTGAAGTTCTCGATGCGGCGATAG
CCCCACAAATCCATCGCTTCAGTGCAGACATCCTGGATTTGCTTGATCTC
TTCTGGCTTGAGATCCTGCATCCAATGGAATGGCGCTGATCTGGAATCTC
GATATGTGGAACTGACACCTCCAATGTTGACCTTGGTGTGCGTGTCCAAA
AACTCCTCCACTGCAGGATCAAATGGCAAGCCATAGAACTGCAAGATGTC
CTGGGTCATCTCACTGGGACTCAAGGATAGGTCCTCATAACGAACAGTCC
TAAAACGAGACGGATATTTCAGCAACAGCACCTCCGCTGTCTTGTAGTCA
TCCCGCAGATCCTGGCACACCAGTCGTGGATCCTCGCAGTCCTCGTTGCC
TCCGCACCACACTCGATGTCGCCTCGACTGCATCGTACCTCGTGGATCTC
GCACCAGCAGCACGATCCGCACGCTGGAGAGACTTTGGTCCTCGAGCAGC
TTTTCGGCCTGGGCGAGTCGCAGGCGGACGGTCTTCATGCTCTGGATGGG
GAAGAGGCGGCAGAAGCGCGTGAGGAAGGCTGGACGCCAGCAGAAGCGCG
GGAACTCCCGGCAGACGTCCCACAGTCGGGTGTTGTGCTCGAACAGATAG
GTGTGCGTCTTGCCGAAGTTCAGATAGTCGATCATGTCGGCGTAGTCGCA
GTTGAGCAGGTTCTTCAGGTTCTGCACGGCCAGCTCCTGATCGTCAGGAT
CGCGGATCTGCTTGATGCCGAAGTCGAGCAGCGGCTCATAGTGATAGAAG
TTGCCCGGTATCGAGTTGAGAATGTCACCCAGG
BO08967.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-PA | 1461 | CG31637-RA | 594..1458 | 883..19 | 4325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 2595 | CG31637-RB | 823..1687 | 883..19 | 4325 | 100 | Minus |
CG31637-RA | 2672 | CG31637-RA | 823..1687 | 883..19 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:34:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6499469..6499819 | 883..533 | 1755 | 100 | Minus |
2L | 23513712 | 2L | 6525617..6525820 | 351..148 | 1020 | 100 | Minus |
2L | 23513712 | 2L | 6525366..6525551 | 534..349 | 930 | 100 | Minus |
2L | 23513712 | 2L | 6525881..6526011 | 149..19 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:35:02 has no hits.
BO08967.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:04 Download gff for
BO08967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 594..1461 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:01 Download gff for
BO08967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 594..1461 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:57:24 Download gff for
BO08967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 823..1701 | 6..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:37:41 Download gff for
BO08967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 823..1701 | 6..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:37:41 Download gff for
BO08967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6499469..6499819 | 533..883 | 100 | -> | Minus |
2L | 6525368..6525550 | 350..532 | 100 | -> | Minus |
2L | 6525619..6525820 | 148..349 | 100 | -> | Minus |
2L | 6525883..6526025 | 6..147 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:57:24 Download gff for
BO08967.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6499469..6499819 | 533..883 | 100 | -> | Minus |
arm_2L | 6525368..6525550 | 350..532 | 100 | -> | Minus |
arm_2L | 6525619..6525820 | 148..349 | 100 | -> | Minus |
arm_2L | 6525883..6526025 | 6..147 | 96 | | Minus |
BO08967.5prime Sequence
961 bp (818 high quality bases) assembled on 2006-01-10
> BO08967.5prime
GAAGTTATCAGTCGACATGAGCACGGGCATTGGCAGCAGCAGCAGCAGCA
CGGAGGAGCAGCAGCACCTGGAACTGAGCGCGGACTTGGAGGCGTGCTCC
CTGCTTGGCCCGCAGGACCCGTCGAACGTCGATACCGGCAGGACACGCGC
TAAGCAGCGACTCAGCTTGAACGGAAAGCGGCGCCGCAGCCGGATGTCGC
GCAGGGCCAATCTGATCGGCATCTGCGGCGTGAGCAGCCTGTGCATCCTG
CTGCTGATCGCCACCACCCAGCACCGTCCGCTGACCACGCCGTTTAATCA
GTCGGCTGGGCGGGATCAGGGCGCGTCCGTAGATGGCGGTCCATCCAATT
CGCTGGCGCGCAGCGCCTTCTACGATCGCTTCCAGCAGCAATTGCAGCAG
CAGCAGCAGTCGTCGCAGACGGCCGTCTACAATCTGACAGCTACTATAGT
GGATGTCCTGTCGGCTCAACGGTCGCGCATCCTGGCCGAAATGGAGAACT
TCGAGTATCCGCGCGGCGGCGCCGAGCGTCTGACGGACATGACGCCGGAG
ACGAACGGCACCCCGGTGCGCAGTGTGGTGGTCACCTCATGGCGCTCCGG
CTCCACCTTCCTGGGTGACATTCTCAACTCGATACCGGGCAACTTCTATC
ACTATGAGCCGCTGCTCGACTTCGGCATCAAGCAGATCCGCGATCCTGAC
GATCAGGAGCTGGCCGTGCAGAACCTGAAGAACCTGCTCAACTGCGACTA
CGCCGACATGATCGACTATCTGAACTTCGGCAAGACGCACACCTATCTGT
TCGAGCACAACACCCGACTGTGGGACGTCTGCCGGGAGTTCCCGCGCTTC
TGCTGGCGTCCAGCCTCCTCACGCGCTTCTGCCGCCTCTTCCCATCCAGA
GCATGAAGACCGTCCGCCTGCGACTCGCCCAGCCGGAAAGCTGCTCGAGG
ACAAAGTCTCT
BO08967.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-PA | 1461 | CG31637-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
CG31637-PA | 1461 | CG31637-RA | 877..918 | 891..932 | 210 | 100 | Plus |
CG31637-PA | 1461 | CG31637-RA | 851..878 | 866..893 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 2595 | CG31637-RB | 230..1178 | 17..961 | 4630 | 99.5 | Plus |
CG31637-RA | 2672 | CG31637-RA | 230..1178 | 17..961 | 4630 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6498876..6499814 | 17..952 | 4530 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:45:46 has no hits.
BO08967.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:05 Download gff for
BO08967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 1..949 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:02 Download gff for
BO08967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-PA | 1..949 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:20:58 Download gff for
BO08967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1178 | 17..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:30:27 Download gff for
BO08967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1178 | 17..961 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:30:27 Download gff for
BO08967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6498876..6499821 | 17..961 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:20:58 Download gff for
BO08967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6498876..6499821 | 17..961 | 99 | | Plus |
BO08967.complete Sequence
1492 bp (1492 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631337
> BO08967.complete
GAAGTTATCAGTCGACATGAGCACGGGCATTGGCAGCAGCAGCAGCAGCA
CGGAGGAGCAGCAGCACCTGGAACTGAGCGCGGACTTGGAGGCGTGCTCC
CTGCTTGGCCCGCAGGACCCGTCGAACGTCGATACCGGCAGGACACGCGC
TAAGCAGCGACTCAGCTTGAACGGAAAGCGGCGCCGCAGCCGGATGTCGC
GCAGGGCCAATCTGATCGGCATCTGCGGCGTGAGCAGCCTGTGCATCCTG
CTGCTGATCGCCACCACCCAGCACCGTCCGCTGACCACGCCGTTTAATCA
GTCGGCTGGGCGGGATCAGGGCGCGTCCGTAGATGGCGGTCCATCCAATT
CGCTGGCGCGCAGCGCCTTCTACGATCGCTTCCAGCAGCAATTGCAGCAG
CAGCAGCAGTCGTCGCAGACGGCCGTCTACAATCTGACAGCTACTATAGT
GGATGTCCTGTCGGCTCAACGGTCGCGCATCCTGGCCGAAATGGAGAACT
TCGAGTATCCGCGCGGCGGCGCCGAGCGTCTGACGGACATGACGCCGGAG
ACGAACGGCACCCCGGTGCGCAGTGTGGTGGTCACCTCATGGCGCTCCGG
CTCCACCTTCCTGGGTGACATTCTCAACTCGATACCGGGCAACTTCTATC
ACTATGAGCCGCTGCTCGACTTCGGCATCAAGCAGATCCGCGATCCTGAC
GATCAGGAGCTGGCCGTGCAGAACCTGAAGAACCTGCTCAACTGCGACTA
CGCCGACATGATCGACTATCTGAACTTCGGCAAGACGCACACCTATCTGT
TCGAGCACAACACCCGACTGTGGGACGTCTGCCGGGAGTTCCCGCGCTTC
TGCTGGCGTCCAGCCTTCCTCACGCGCTTCTGCCGCCTCTTCCCCATCCA
GAGCATGAAGACCGTCCGCCTGCGACTCGCCCAGGCCGAAAAGCTGCTCG
AGGACCAAAGTCTCTCCAGCGTGCGGATCGTGCTGCTGGTGCGAGATCCA
CGAGGTACGATGCAGTCGAGGCGACATCGAGTGTGGTGCGGAGGCAACGA
GGACTGCGAGGATCCACGACTGGTGTGCCAGGATCTGCGGGATGACTACA
AGACAGCGGAGGTGCTGTTGCTGAAATATCCGTCTCGTTTTAGGACTGTT
CGTTATGAGGACCTATCCTTGAGTCCCAGTGAGATGACCCAGGACATCTT
GCAGTTCTATGGCTTGCCATTTGATCCTGCAGTGGAGGAGTTTTTGGACA
CGCACACCAAGGTCAACATTGGAGGTGTCAGTTCCACATATCGAGATTCC
AGATCAGCGCCATTCCATTGGATGCAGGATCTCAAGCCAGAAGAGATCAA
GCAAATCCAGGATGTCTGCACTGAAGCGATGGATTTGTGGGGCTATCGCC
GCATCGAGAACTTCAACAACTTCTCCACCACCCAGCAGACCTTCGATCCG
ATGGTTATGCCGCCACCGTTCACGGCAAGCTTTCTAGACCAT
BO08967.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 1461 | CG31637-PB | 1..1458 | 17..1474 | 7290 | 100 | Plus |
CG31637-RA | 1461 | CG31637-PA | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-RB | 2595 | CG31637-RB | 230..1687 | 17..1474 | 7290 | 100 | Plus |
CG31637-RA | 2672 | CG31637-RA | 230..1687 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6498876..6499819 | 17..960 | 4720 | 100 | Plus |
2L | 23513712 | 2L | 6525617..6525820 | 1142..1345 | 1020 | 100 | Plus |
2L | 23513712 | 2L | 6525366..6525551 | 959..1144 | 930 | 100 | Plus |
2L | 23513712 | 2L | 6525881..6526011 | 1344..1474 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:33:19 has no hits.
BO08967.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:11 Download gff for
BO08967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 1..1461 | 17..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:26 Download gff for
BO08967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 235..1692 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:31 Download gff for
BO08967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1687 | 17..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:12 Download gff for
BO08967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 235..1706 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:26 Download gff for
BO08967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31637-RA | 230..1687 | 17..1476 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:26 Download gff for
BO08967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6498876..6499819 | 17..960 | 100 | -> | Plus |
2L | 6525368..6525550 | 961..1143 | 100 | -> | Plus |
2L | 6525619..6525820 | 1144..1345 | 100 | -> | Plus |
2L | 6525883..6526011 | 1346..1476 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:31 Download gff for
BO08967.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6498876..6499819 | 17..960 | 100 | -> | Plus |
arm_2L | 6525368..6525550 | 961..1143 | 100 | -> | Plus |
arm_2L | 6525619..6525820 | 1144..1345 | 100 | -> | Plus |
arm_2L | 6525883..6526011 | 1346..1476 | 98 | | Plus |
BO08967.pep Sequence
Translation from 16 to 1492
> BO08967.pep
MSTGIGSSSSSTEEQQHLELSADLEACSLLGPQDPSNVDTGRTRAKQRLS
LNGKRRRSRMSRRANLIGICGVSSLCILLLIATTQHRPLTTPFNQSAGRD
QGASVDGGPSNSLARSAFYDRFQQQLQQQQQSSQTAVYNLTATIVDVLSA
QRSRILAEMENFEYPRGGAERLTDMTPETNGTPVRSVVVTSWRSGSTFLG
DILNSIPGNFYHYEPLLDFGIKQIRDPDDQELAVQNLKNLLNCDYADMID
YLNFGKTHTYLFEHNTRLWDVCREFPRFCWRPAFLTRFCRLFPIQSMKTV
RLRLAQAEKLLEDQSLSSVRIVLLVRDPRGTMQSRRHRVWCGGNEDCEDP
RLVCQDLRDDYKTAEVLLLKYPSRFRTVRYEDLSLSPSEMTQDILQFYGL
PFDPAVEEFLDTHTKVNIGGVSSTYRDSRSAPFHWMQDLKPEEIKQIQDV
CTEAMDLWGYRRIENFNNFSTTQQTFDPMVMPPPFTASFLDH
BO08967.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31637-PB | 486 | CG31637-PB | 1..486 | 1..486 | 2556 | 100 | Plus |
CG31637-PA | 486 | CG31637-PA | 1..486 | 1..486 | 2556 | 100 | Plus |
CG9550-PA | 363 | CG9550-PA | 54..359 | 172..480 | 500 | 35.4 | Plus |