Clone Sequence Records
BO08969.3prime Sequence
947 bp (855 high quality bases) assembled on 2006-01-10
> BO08969.3prime
ATGGTCTAGAAAGCTTGCATCATCATCGAGGATTTCGATGGGAGACTTAG
ATTCGTTTGGATCATCAGAAATGTCCGTGTCGCTTGCAGGATTCTTAAGT
TCCTCTATCTCATCTTTGAGGTCTTCTATTTGTTCTTCATACCTTCGGCG
TTGAGAGGAAAGCATAAATTCTGATTCTCTTTGCGCAATTAGTAATTTTT
TCTCGCATTCGTCTTCATATTGCTTCTTGTTGTTTTGGATAATCTCCTGG
TAGGTGGCAGTCAGTTCCCTTCGCAGTTTCTCCTCAAGCAGCTGCATTTG
CAGCACATGATCGTACTTCAGTTGCTCAATCTCTAACTGCAGGCGCACGT
TTTCGTCCTCAAGTTCCTTGGTGTAGTCGCCGCCCTCGCACGTCGACATC
TTTGAGAATTCCATGAAACCACAGTAGCTGACGCGATGCTGTTTAATTAC
GGGCTCCTTGAAGATGATGTTCTTGGCGATGGAAGCAAAGTTCAAGACGT
TCAGGTTCTCCTCGTAGTATTTATCCAGAGGGGTAACTGTCACGATCATG
GCCAATTTCTCCTTGCCCAGCAAAGCAGCCTGCAACAGCATTGTTAGCTT
GGAGTCGCGATATGGAATGATGTCGGCGTTTTTCTTTTTCTGAACTGTAC
TGGCCGCATCTAAACATCGACCCAGCACCATCAGCGACGTATTTATGTTC
TTTGCTTCCTTGAGACGAAGGCCGGAGGTACCCGTGTTGTTGACGCGTTC
CGAACCCGCCAGGTCGCAGAATTTGTACGAACTCTGTGTGGTGATGCCCG
ACCGATTGTACTTTAGTATGTCCACGGTAAAGACACAGTGCGACCGACTA
GAGTTGGCGTTCACCGAGGTGGAGGCGTACGTGGAGCGCTGCTGGCCCAG
CCGGAGCAGACGCAGCGCCTCCTCGCTGCTCGTCACGAAAACACTGG
BO08969.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12298-PA | 1887 | sub-RA | 956..1884 | 947..19 | 4645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sub-RB | 2123 | CG12298-RB | 1056..1984 | 947..19 | 4645 | 100 | Minus |
sub-RA | 2460 | CG12298-RA | 1056..1984 | 947..19 | 4645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17746178..17746962 | 163..947 | 3925 | 100 | Plus |
2R | 25286936 | 2R | 17745976..17746120 | 19..163 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:17:51 has no hits.
BO08969.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:08 Download gff for
BO08969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-PA | 956..1887 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:06 Download gff for
BO08969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12298-PA | 956..1887 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:07 Download gff for
BO08969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 1056..1992 | 8..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:10 Download gff for
BO08969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 1056..1992 | 8..947 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:10 Download gff for
BO08969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17745968..17746119 | 8..162 | 97 | <- | Plus |
2R | 17746178..17746962 | 163..947 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:07 Download gff for
BO08969.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13633473..13633624 | 8..162 | 97 | <- | Plus |
arm_2R | 13633683..13634467 | 163..947 | 100 | | Plus |
BO08969.5prime Sequence
925 bp (842 high quality bases) assembled on 2006-01-10
> BO08969.5prime
GAAGTTATCAGTCGACATGGACAGCAAGGAGGTTTCGGAGGTGCCAAGGC
GGGAGGTGCGCTCCTTCCTGATGGCCCGGGATCCCTCCATCGACCGCCGC
TTTCGACCGCGACCCAACAAAAAGATGCGTCTGTTTGACAACATTCAGGA
GTCGGAGGAAGAAAGTTTTTCCGAATACTCGGACACGGAATCGGAGTACA
AGTACCAGTCGAGCGAGGCAACCGAAGGGGCCTCATGCGCTACCAGTGCG
GCAGACAGCAGCAACGTGGAAACGGGGCCACAGGTCTTCCTGCGCTTGCG
TCCCGTTAAGGATGCATCCAAAGCCTACATAGTCTCGGAAGAAGCAAATG
TGCTGATCACTAGCTGCAAAGTGGACTCGACCAGCAACAATGTGAACCGC
ATGGAAAAACACTTTGGATTCACTTCCATCTTTGACAGCACCGTTGGCCA
GCGAGACATCTATGATACCTGTGTGGGTCCCAAAATTATGGAGGAGGAAT
GTGTGACCATTATGACATATGGCACATCGGGGTCTGGAAAAACGTATACC
TTACTGGGCGATGATGTGCGTGCTGGAATCATTCCGCGTGCCCTGGAAAA
CATATTCACCATTTACCAGGACACCGTCTTCCGATCGCCCAAGCTGAAGC
TAATCAATGGCAGCATCGTGTTCTTGCAGGACGACGCCTCGCTGAAAGAG
CTGCAGATTCGGAAAAAACTTTTAGACTTATGTCCGGATATCAGTGCCCA
CCATCAGCGTCTGAAGCAGGTCATTGATGGCGACCACATGTTCGAAACGA
AGGCTTCCACCGATGTTTCCGTCTTGGTTTGGGTGTCCTTCGTGGAGATC
TACAATGAACTTGTGTACGACCTGCTAGCCATTCCGCCGAAACAGGACAA
ACTGGGGGGAGTGCCACGAAAAACC
BO08969.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12298-PA | 1887 | sub-RA | 1..907 | 17..923 | 4485 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sub-RB | 2123 | CG12298-RB | 101..1007 | 17..923 | 4505 | 99.8 | Plus |
sub-RA | 2460 | CG12298-RA | 101..1007 | 17..923 | 4505 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17747437..17747978 | 558..17 | 2710 | 100 | Minus |
2R | 25286936 | 2R | 17747011..17747377 | 923..557 | 1805 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:07:38 has no hits.
BO08969.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:09 Download gff for
BO08969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:08 Download gff for
BO08969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12298-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:12 Download gff for
BO08969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 101..1009 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:44 Download gff for
BO08969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 101..1009 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:44 Download gff for
BO08969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17747008..17747376 | 558..925 | 99 | <- | Minus |
2R | 17747438..17747978 | 17..557 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:12 Download gff for
BO08969.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13634513..13634881 | 558..925 | 99 | <- | Minus |
arm_2R | 13634943..13635483 | 17..557 | 100 | | Minus |
BO08969.complete Sequence
1918 bp assembled on 2007-11-30
GenBank Submission: FJ631338
> BO08969.complete
GAAGTTATCAGTCGACATGGACAGCAAGGAGGTTTCGGAGGTGCCAAGGC
GGGAGGTGCGCTCCTTCCTGATGGCCCGGGATCCCTCCATCGACCGCCGC
TTTCGACCGCGACCCAACAAAAAGATGCGTCTGTTTGACAACATTCAGGA
GTCGGAGGAAGAAAGTTTTTCCGAATACTCGGACACGGAATCGGAGTACA
AGTACCAGTCGAGCGAGGCAACCGAAGGGGCCTCATGCGCTACCAGTGCG
GCAGACAGCAGCAACGTGGAAACGGGGCCACAGGTCTTCCTGCGCTTGCG
TCCCGTTAAGGATGCATCCAAAGCCTACATAGTCTCGGAAGAAGCAAATG
TGCTGATCACTAGCTGCAAAGTGGACTCGACCAGCAACAATGTGAACCGC
ATGGAAAAACACTTTGGATTCACTTCCATCTTTGACAGCACCGTTGGCCA
GCGAGACATCTATGATACCTGTGTGGGTCCCAAAATTATGGAGGAGGAAT
GTGTGACCATTATGACATATGGCACATCGGGGTCTGGAAAAACGTATACC
TTACTGGGCGATGATGTGCGTGCTGGAATCATTCCGCGTGCCCTGGAAAA
CATATTCACCATTTACCAGGACACCGTCTTCCGATCGCCCAAGCTGAAGC
TAATCAATGGCAGCATCGTGTTCTTGCAGGACGACGCCTCGCTGAAAGAG
CTGCAGATTCGGAAAAAACTTTTAGACTTATGTCCGGATATCAGTGCCCA
CCATCAGCGTCTGAAGCAGGTCATTGATGGCGACCACATGTTCGAAACGA
AGGCTTCCACCGATGTTTCCGTCTTGGTTTGGGTGTCCTTCGTGGAGATC
TACAATGAACTTGTGTACGACCTGCTAGCCATTCCGCCGAAACAGGACAA
ACTGGGGGAGGTGCCACGAAAAAACCTGAAGATCGTGGGCAACAAAGGCC
ATGTGTTCATCAAGGGTCTGACCAGTGTTTTCGTGACGAGCAGCGAGGAG
GCGCTGCGTCTGCTCCGGCTGGGCCAGCAGCGCTCCACGTACGCCTCCAC
CTCGGTGAACGCCAACTCTAGTCGGTCGCACTGTGTCTTTACCGTGGACA
TACTAAAGTACAATCGGTCGGGCATCACCACACAGAGTTCGTACAAATTC
TGCGACCTGGCGGGTTCGGAACGCGTCAACAACACGGGTACCTCCGGCCT
TCGTCTCAAGGAAGCAAAGAACATAAATACGTCGCTGATGGTGCTGGGTC
GATGTTTAGATGCGGCCAGTACAGTTCAGAAAAAGAAAAACGCCGACATC
ATTCCATATCGCGACTCCAAGCTAACAATGCTGTTGCAGGCTGCTTTGCT
GGGCAAGGAGAAATTGGCCATGATCGTGACAGTTACCCCTCTGGATAAAT
ACTACGAGGAGAACCTGAACGTCTTGAACTTTGCTTCCATCGCCAAGAAC
ATCATCTTCAAGGAGCCCGTAATTAAACAGCATCGCGTCAGCTACTGTGG
TTTCATGGAATTCTCAAAGATGTCGACGTGCGAGGGCGGCGACTACACCA
AGGAACTTGAGGACGAAAACGTGCGCCTGCAGTTAGAGATTGAGCAACTG
AAGTACGATCATGTGCTGCAAATGCAGCTGCTTGAGGAGAAACTGCGAAG
GGAACTGACTGCCACCTACCAGGAGATTATCCAAAACAACAAGAAGCAAT
ATGAAGACGAATGCGAGAAAAAATTACTAATTGCGCAAAGAGAATCAGAA
TTTATGCTTTCCTCTCAACGCCGAAGGTATGAAGAACAAATAGAAGACCT
CAAAGATGAGATAGAGGAACTTAAGAATCCTGCAAGCGACACGGACATTT
CTGATGATCCAAACGAATCTAAGTCTCCCATCGAAATCCTCGATGATGAT
GCAAGCTTTCTAGACCAT
BO08969.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sub-RB | 1887 | CG12298-PB | 1..1884 | 17..1900 | 9420 | 100 | Plus |
sub-RA | 1887 | CG12298-PA | 1..1884 | 17..1900 | 9420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sub-RB | 2123 | CG12298-RB | 101..1984 | 17..1900 | 9420 | 100 | Plus |
sub-RA | 2460 | CG12298-RA | 101..1984 | 17..1900 | 9420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17746178..17747377 | 1756..557 | 6000 | 100 | Minus |
2R | 25286936 | 2R | 17747437..17747978 | 558..17 | 2710 | 100 | Minus |
2R | 25286936 | 2R | 17745976..17746120 | 1900..1756 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:08:01 has no hits.
BO08969.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:34 Download gff for
BO08969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 1..1887 | 17..1901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:53 Download gff for
BO08969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 134..2025 | 17..1911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:20 Download gff for
BO08969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 101..1984 | 17..1902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:38 Download gff for
BO08969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 134..2017 | 17..1902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:37 Download gff for
BO08969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sub-RA | 101..1984 | 17..1902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:37 Download gff for
BO08969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17745974..17746119 | 1757..1902 | 98 | <- | Minus |
2R | 17746178..17747376 | 558..1756 | 100 | <- | Minus |
2R | 17747438..17747978 | 17..557 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:20 Download gff for
BO08969.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13633683..13634881 | 558..1756 | 100 | <- | Minus |
arm_2R | 13633479..13633624 | 1757..1902 | 98 | <- | Minus |
arm_2R | 13634943..13635483 | 17..557 | 100 | | Minus |
BO08969.pep Sequence
Translation from 16 to 1918
> BO08969.pep
MDSKEVSEVPRREVRSFLMARDPSIDRRFRPRPNKKMRLFDNIQESEEES
FSEYSDTESEYKYQSSEATEGASCATSAADSSNVETGPQVFLRLRPVKDA
SKAYIVSEEANVLITSCKVDSTSNNVNRMEKHFGFTSIFDSTVGQRDIYD
TCVGPKIMEEECVTIMTYGTSGSGKTYTLLGDDVRAGIIPRALENIFTIY
QDTVFRSPKLKLINGSIVFLQDDASLKELQIRKKLLDLCPDISAHHQRLK
QVIDGDHMFETKASTDVSVLVWVSFVEIYNELVYDLLAIPPKQDKLGEVP
RKNLKIVGNKGHVFIKGLTSVFVTSSEEALRLLRLGQQRSTYASTSVNAN
SSRSHCVFTVDILKYNRSGITTQSSYKFCDLAGSERVNNTGTSGLRLKEA
KNINTSLMVLGRCLDAASTVQKKKNADIIPYRDSKLTMLLQAALLGKEKL
AMIVTVTPLDKYYEENLNVLNFASIAKNIIFKEPVIKQHRVSYCGFMEFS
KMSTCEGGDYTKELEDENVRLQLEIEQLKYDHVLQMQLLEEKLRRELTAT
YQEIIQNNKKQYEDECEKKLLIAQRESEFMLSSQRRRYEEQIEDLKDEIE
ELKNPASDTDISDDPNESKSPIEILDDDASFLDH
BO08969.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sub-PB | 628 | CG12298-PB | 1..628 | 1..628 | 3185 | 100 | Plus |
sub-PA | 628 | CG12298-PA | 1..628 | 1..628 | 3185 | 100 | Plus |
pav-PA | 887 | CG1258-PA | 28..452 | 80..479 | 429 | 30.5 | Plus |
Klp61F-PA | 1066 | CG9191-PA | 140..484 | 257..593 | 348 | 31 | Plus |
Klp64D-PA | 677 | CG10642-PA | 143..462 | 262..604 | 338 | 33.5 | Plus |