Clone BO08969 Report

Search the DGRC for BO08969

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:69
Vector:pDNR-Dual
Associated Gene/Transcriptsub-RA
Protein status:BO08969.pep: validated full length
Sequenced Size:1918

Clone Sequence Records

BO08969.3prime Sequence

947 bp (855 high quality bases) assembled on 2006-01-10

> BO08969.3prime
ATGGTCTAGAAAGCTTGCATCATCATCGAGGATTTCGATGGGAGACTTAG
ATTCGTTTGGATCATCAGAAATGTCCGTGTCGCTTGCAGGATTCTTAAGT
TCCTCTATCTCATCTTTGAGGTCTTCTATTTGTTCTTCATACCTTCGGCG
TTGAGAGGAAAGCATAAATTCTGATTCTCTTTGCGCAATTAGTAATTTTT
TCTCGCATTCGTCTTCATATTGCTTCTTGTTGTTTTGGATAATCTCCTGG
TAGGTGGCAGTCAGTTCCCTTCGCAGTTTCTCCTCAAGCAGCTGCATTTG
CAGCACATGATCGTACTTCAGTTGCTCAATCTCTAACTGCAGGCGCACGT
TTTCGTCCTCAAGTTCCTTGGTGTAGTCGCCGCCCTCGCACGTCGACATC
TTTGAGAATTCCATGAAACCACAGTAGCTGACGCGATGCTGTTTAATTAC
GGGCTCCTTGAAGATGATGTTCTTGGCGATGGAAGCAAAGTTCAAGACGT
TCAGGTTCTCCTCGTAGTATTTATCCAGAGGGGTAACTGTCACGATCATG
GCCAATTTCTCCTTGCCCAGCAAAGCAGCCTGCAACAGCATTGTTAGCTT
GGAGTCGCGATATGGAATGATGTCGGCGTTTTTCTTTTTCTGAACTGTAC
TGGCCGCATCTAAACATCGACCCAGCACCATCAGCGACGTATTTATGTTC
TTTGCTTCCTTGAGACGAAGGCCGGAGGTACCCGTGTTGTTGACGCGTTC
CGAACCCGCCAGGTCGCAGAATTTGTACGAACTCTGTGTGGTGATGCCCG
ACCGATTGTACTTTAGTATGTCCACGGTAAAGACACAGTGCGACCGACTA
GAGTTGGCGTTCACCGAGGTGGAGGCGTACGTGGAGCGCTGCTGGCCCAG
CCGGAGCAGACGCAGCGCCTCCTCGCTGCTCGTCACGAAAACACTGG

BO08969.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12298-PA 1887 sub-RA 956..1884 947..19 4645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
sub-RB 2123 CG12298-RB 1056..1984 947..19 4645 100 Minus
sub-RA 2460 CG12298-RA 1056..1984 947..19 4645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17746178..17746962 163..947 3925 100 Plus
2R 25286936 2R 17745976..17746120 19..163 725 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:17:51 has no hits.

BO08969.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:08 Download gff for BO08969.3prime
Subject Subject Range Query Range Percent Splice Strand
sub-PA 956..1887 18..947 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:06 Download gff for BO08969.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12298-PA 956..1887 18..947 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:07 Download gff for BO08969.3prime
Subject Subject Range Query Range Percent Splice Strand
sub-RA 1056..1992 8..947 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:10 Download gff for BO08969.3prime
Subject Subject Range Query Range Percent Splice Strand
sub-RA 1056..1992 8..947 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:10 Download gff for BO08969.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17745968..17746119 8..162 97 <- Plus
2R 17746178..17746962 163..947 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:07 Download gff for BO08969.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13633473..13633624 8..162 97 <- Plus
arm_2R 13633683..13634467 163..947 100   Plus

BO08969.5prime Sequence

925 bp (842 high quality bases) assembled on 2006-01-10

> BO08969.5prime
GAAGTTATCAGTCGACATGGACAGCAAGGAGGTTTCGGAGGTGCCAAGGC
GGGAGGTGCGCTCCTTCCTGATGGCCCGGGATCCCTCCATCGACCGCCGC
TTTCGACCGCGACCCAACAAAAAGATGCGTCTGTTTGACAACATTCAGGA
GTCGGAGGAAGAAAGTTTTTCCGAATACTCGGACACGGAATCGGAGTACA
AGTACCAGTCGAGCGAGGCAACCGAAGGGGCCTCATGCGCTACCAGTGCG
GCAGACAGCAGCAACGTGGAAACGGGGCCACAGGTCTTCCTGCGCTTGCG
TCCCGTTAAGGATGCATCCAAAGCCTACATAGTCTCGGAAGAAGCAAATG
TGCTGATCACTAGCTGCAAAGTGGACTCGACCAGCAACAATGTGAACCGC
ATGGAAAAACACTTTGGATTCACTTCCATCTTTGACAGCACCGTTGGCCA
GCGAGACATCTATGATACCTGTGTGGGTCCCAAAATTATGGAGGAGGAAT
GTGTGACCATTATGACATATGGCACATCGGGGTCTGGAAAAACGTATACC
TTACTGGGCGATGATGTGCGTGCTGGAATCATTCCGCGTGCCCTGGAAAA
CATATTCACCATTTACCAGGACACCGTCTTCCGATCGCCCAAGCTGAAGC
TAATCAATGGCAGCATCGTGTTCTTGCAGGACGACGCCTCGCTGAAAGAG
CTGCAGATTCGGAAAAAACTTTTAGACTTATGTCCGGATATCAGTGCCCA
CCATCAGCGTCTGAAGCAGGTCATTGATGGCGACCACATGTTCGAAACGA
AGGCTTCCACCGATGTTTCCGTCTTGGTTTGGGTGTCCTTCGTGGAGATC
TACAATGAACTTGTGTACGACCTGCTAGCCATTCCGCCGAAACAGGACAA
ACTGGGGGGAGTGCCACGAAAAACC

BO08969.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG12298-PA 1887 sub-RA 1..907 17..923 4485 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
sub-RB 2123 CG12298-RB 101..1007 17..923 4505 99.8 Plus
sub-RA 2460 CG12298-RA 101..1007 17..923 4505 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17747437..17747978 558..17 2710 100 Minus
2R 25286936 2R 17747011..17747377 923..557 1805 99.5 Minus
Blast to na_te.dros performed on 2015-02-12 19:07:38 has no hits.

BO08969.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:09 Download gff for BO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
sub-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:08 Download gff for BO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12298-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:28:12 Download gff for BO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
sub-RA 101..1009 17..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:30:44 Download gff for BO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
sub-RA 101..1009 17..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:30:44 Download gff for BO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17747008..17747376 558..925 99 <- Minus
2R 17747438..17747978 17..557 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:28:12 Download gff for BO08969.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13634513..13634881 558..925 99 <- Minus
arm_2R 13634943..13635483 17..557 100   Minus

BO08969.complete Sequence

1918 bp assembled on 2007-11-30

GenBank Submission: FJ631338

> BO08969.complete
GAAGTTATCAGTCGACATGGACAGCAAGGAGGTTTCGGAGGTGCCAAGGC
GGGAGGTGCGCTCCTTCCTGATGGCCCGGGATCCCTCCATCGACCGCCGC
TTTCGACCGCGACCCAACAAAAAGATGCGTCTGTTTGACAACATTCAGGA
GTCGGAGGAAGAAAGTTTTTCCGAATACTCGGACACGGAATCGGAGTACA
AGTACCAGTCGAGCGAGGCAACCGAAGGGGCCTCATGCGCTACCAGTGCG
GCAGACAGCAGCAACGTGGAAACGGGGCCACAGGTCTTCCTGCGCTTGCG
TCCCGTTAAGGATGCATCCAAAGCCTACATAGTCTCGGAAGAAGCAAATG
TGCTGATCACTAGCTGCAAAGTGGACTCGACCAGCAACAATGTGAACCGC
ATGGAAAAACACTTTGGATTCACTTCCATCTTTGACAGCACCGTTGGCCA
GCGAGACATCTATGATACCTGTGTGGGTCCCAAAATTATGGAGGAGGAAT
GTGTGACCATTATGACATATGGCACATCGGGGTCTGGAAAAACGTATACC
TTACTGGGCGATGATGTGCGTGCTGGAATCATTCCGCGTGCCCTGGAAAA
CATATTCACCATTTACCAGGACACCGTCTTCCGATCGCCCAAGCTGAAGC
TAATCAATGGCAGCATCGTGTTCTTGCAGGACGACGCCTCGCTGAAAGAG
CTGCAGATTCGGAAAAAACTTTTAGACTTATGTCCGGATATCAGTGCCCA
CCATCAGCGTCTGAAGCAGGTCATTGATGGCGACCACATGTTCGAAACGA
AGGCTTCCACCGATGTTTCCGTCTTGGTTTGGGTGTCCTTCGTGGAGATC
TACAATGAACTTGTGTACGACCTGCTAGCCATTCCGCCGAAACAGGACAA
ACTGGGGGAGGTGCCACGAAAAAACCTGAAGATCGTGGGCAACAAAGGCC
ATGTGTTCATCAAGGGTCTGACCAGTGTTTTCGTGACGAGCAGCGAGGAG
GCGCTGCGTCTGCTCCGGCTGGGCCAGCAGCGCTCCACGTACGCCTCCAC
CTCGGTGAACGCCAACTCTAGTCGGTCGCACTGTGTCTTTACCGTGGACA
TACTAAAGTACAATCGGTCGGGCATCACCACACAGAGTTCGTACAAATTC
TGCGACCTGGCGGGTTCGGAACGCGTCAACAACACGGGTACCTCCGGCCT
TCGTCTCAAGGAAGCAAAGAACATAAATACGTCGCTGATGGTGCTGGGTC
GATGTTTAGATGCGGCCAGTACAGTTCAGAAAAAGAAAAACGCCGACATC
ATTCCATATCGCGACTCCAAGCTAACAATGCTGTTGCAGGCTGCTTTGCT
GGGCAAGGAGAAATTGGCCATGATCGTGACAGTTACCCCTCTGGATAAAT
ACTACGAGGAGAACCTGAACGTCTTGAACTTTGCTTCCATCGCCAAGAAC
ATCATCTTCAAGGAGCCCGTAATTAAACAGCATCGCGTCAGCTACTGTGG
TTTCATGGAATTCTCAAAGATGTCGACGTGCGAGGGCGGCGACTACACCA
AGGAACTTGAGGACGAAAACGTGCGCCTGCAGTTAGAGATTGAGCAACTG
AAGTACGATCATGTGCTGCAAATGCAGCTGCTTGAGGAGAAACTGCGAAG
GGAACTGACTGCCACCTACCAGGAGATTATCCAAAACAACAAGAAGCAAT
ATGAAGACGAATGCGAGAAAAAATTACTAATTGCGCAAAGAGAATCAGAA
TTTATGCTTTCCTCTCAACGCCGAAGGTATGAAGAACAAATAGAAGACCT
CAAAGATGAGATAGAGGAACTTAAGAATCCTGCAAGCGACACGGACATTT
CTGATGATCCAAACGAATCTAAGTCTCCCATCGAAATCCTCGATGATGAT
GCAAGCTTTCTAGACCAT

BO08969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
sub-RB 1887 CG12298-PB 1..1884 17..1900 9420 100 Plus
sub-RA 1887 CG12298-PA 1..1884 17..1900 9420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:03
Subject Length Description Subject Range Query Range Score Percent Strand
sub-RB 2123 CG12298-RB 101..1984 17..1900 9420 100 Plus
sub-RA 2460 CG12298-RA 101..1984 17..1900 9420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17746178..17747377 1756..557 6000 100 Minus
2R 25286936 2R 17747437..17747978 558..17 2710 100 Minus
2R 25286936 2R 17745976..17746120 1900..1756 725 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:08:01 has no hits.

BO08969.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:34 Download gff for BO08969.complete
Subject Subject Range Query Range Percent Splice Strand
sub-RA 1..1887 17..1901 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:53 Download gff for BO08969.complete
Subject Subject Range Query Range Percent Splice Strand
sub-RA 134..2025 17..1911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:20 Download gff for BO08969.complete
Subject Subject Range Query Range Percent Splice Strand
sub-RA 101..1984 17..1902 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:47:38 Download gff for BO08969.complete
Subject Subject Range Query Range Percent Splice Strand
sub-RA 134..2017 17..1902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:37 Download gff for BO08969.complete
Subject Subject Range Query Range Percent Splice Strand
sub-RA 101..1984 17..1902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:37 Download gff for BO08969.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17745974..17746119 1757..1902 98 <- Minus
2R 17746178..17747376 558..1756 100 <- Minus
2R 17747438..17747978 17..557 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:20 Download gff for BO08969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13633683..13634881 558..1756 100 <- Minus
arm_2R 13633479..13633624 1757..1902 98 <- Minus
arm_2R 13634943..13635483 17..557 100   Minus

BO08969.pep Sequence

Translation from 16 to 1918

> BO08969.pep
MDSKEVSEVPRREVRSFLMARDPSIDRRFRPRPNKKMRLFDNIQESEEES
FSEYSDTESEYKYQSSEATEGASCATSAADSSNVETGPQVFLRLRPVKDA
SKAYIVSEEANVLITSCKVDSTSNNVNRMEKHFGFTSIFDSTVGQRDIYD
TCVGPKIMEEECVTIMTYGTSGSGKTYTLLGDDVRAGIIPRALENIFTIY
QDTVFRSPKLKLINGSIVFLQDDASLKELQIRKKLLDLCPDISAHHQRLK
QVIDGDHMFETKASTDVSVLVWVSFVEIYNELVYDLLAIPPKQDKLGEVP
RKNLKIVGNKGHVFIKGLTSVFVTSSEEALRLLRLGQQRSTYASTSVNAN
SSRSHCVFTVDILKYNRSGITTQSSYKFCDLAGSERVNNTGTSGLRLKEA
KNINTSLMVLGRCLDAASTVQKKKNADIIPYRDSKLTMLLQAALLGKEKL
AMIVTVTPLDKYYEENLNVLNFASIAKNIIFKEPVIKQHRVSYCGFMEFS
KMSTCEGGDYTKELEDENVRLQLEIEQLKYDHVLQMQLLEEKLRRELTAT
YQEIIQNNKKQYEDECEKKLLIAQRESEFMLSSQRRRYEEQIEDLKDEIE
ELKNPASDTDISDDPNESKSPIEILDDDASFLDH

BO08969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
sub-PB 628 CG12298-PB 1..628 1..628 3185 100 Plus
sub-PA 628 CG12298-PA 1..628 1..628 3185 100 Plus
pav-PA 887 CG1258-PA 28..452 80..479 429 30.5 Plus
Klp61F-PA 1066 CG9191-PA 140..484 257..593 348 31 Plus
Klp64D-PA 677 CG10642-PA 143..462 262..604 338 33.5 Plus