Clone Sequence Records
BO08974.3prime Sequence
821 bp (799 high quality bases) assembled on 2006-01-10
> BO08974.3prime
ATGGTCTAGAAAGCTTGCAACATATCTGGTAATCTGGGTATGGAACTCCG
ATAGGCAGATCTGCAGCTGGCTGAACGAAGGTCGCTCAGCTGGCATGGAG
GCCCAACAATAGGCCATAATGGTGAAGAGCTCATCGGGGCAGTTGAATGG
CTGGGCCAATCTGTATCCATCCTTGAGATAGTGCTCCATCTCATAGGGAT
CGATCTCGGCGTAGGGCAGTTTACCCAGAGTGCACATTTCCCACATGAGA
ACGCCGAAGGACCAAACATCACTGCCCTCGTTGTAATGGGACTTCTGCAG
GGCCTCCAAGGACAGCCACTTGATGGGTCGGTACTCGCCATCGCCCAGAG
AATTGTAGTCACCCGGGAAGAGATCGCGACTCAAAGCACTATCAGTGAGC
TTAACTCGAAGCTGATCATCAATAACACAGTTTCTGGCCGCAATGTCCTT
GTGGATGACGCCGTGGTTGTGCAGATGCTCCATGGCCATGGCCAGTTGTG
AGCCCATAAGCACCGTCTGAATGGTGGTGACGCTCCTGGCGTACGACGGA
TCCTGCAGGAAGCTCTTCAGGTTCCTCACACTTCCGGTGGCGGCATAGAG
CACAAAGGGCGTGGCATAGTCCTCGATGGAGATGCCCAGAACGGAGAGGA
CATTCGGATGCGAGGCCTCGTACAGCATCATGGACTCCTGGAGCAGCAGA
TTCACTTGCAGCTGGCTGGCGTGCTGAGCCACAGTCTTGACCAATACCTC
CTGGCAGTCGTTATAAGTGCCGCGATAGATTCGCCCAAAGTTTCCCTCCT
GGACGAGGCANGAGAGCCGGA
BO08974.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17348-PA | 1833 | drl-RA | 1028..1830 | 821..19 | 3996 | 99.8 | Minus |
| CG17559-PA | 1755 | dnt-RA | 1613..1671 | 158..100 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:35:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drl-RB | 3104 | CG17348-RB | 1415..2217 | 821..19 | 4004 | 99.9 | Minus |
| drl-RA | 3104 | CG17348-RA | 1415..2217 | 821..19 | 4004 | 99.9 | Minus |
| dnt-RB | 2639 | CG17559-RB | 1358..2059 | 801..100 | 700 | 73.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:35:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19206642..19207038 | 821..425 | 1974 | 99.7 | Minus |
| 2L | 23513712 | 2L | 19207205..19207501 | 424..128 | 1485 | 100 | Minus |
| 2L | 23513712 | 2L | 19207626..19207734 | 127..19 | 545 | 100 | Minus |
| 2L | 23513712 | 2L | 19339355..19339651 | 128..424 | 390 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:35:38 has no hits.
BO08974.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:13 Download gff for
BO08974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-PA | 1029..1833 | 15..820 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:14 Download gff for
BO08974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17348-PA | 1029..1833 | 15..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:54:05 Download gff for
BO08974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 1416..2220 | 15..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:49:14 Download gff for
BO08974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 1416..2220 | 15..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:49:14 Download gff for
BO08974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19207626..19207737 | 15..127 | 98 | | Minus |
| 2L | 19206643..19207038 | 425..820 | 99 | -> | Minus |
| 2L | 19207205..19207501 | 128..424 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:54:05 Download gff for
BO08974.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19206643..19207038 | 425..820 | 99 | -> | Minus |
| arm_2L | 19207205..19207501 | 128..424 | 100 | -> | Minus |
| arm_2L | 19207626..19207737 | 15..127 | 98 | | Minus |
BO08974.5prime Sequence
958 bp (875 high quality bases) assembled on 2006-01-10
> BO08974.5prime
GAAGTTATCAGTCGACATGGCCCCCAACTTGCTAACAATCGGATTACTTT
TGACCCTGATCGCCAGCGGTCAGGCCCATCTCAATATTTTCCTCAACTTG
CACGAGGTGCTGCGCCTAATCGGAGTCTCGGCGGAGCTTTACTACGTGCG
GGAGGGCGCCATTAACGACTACGCCTTGAACTTCGCCGTGCCCGTGCCGG
CGAACATCAGTGACGTGACCTTTACGTGGCAATCCCTGGTGGACCATCCG
CTGCCCTACAGCATCAATATCGCCACATCGGACACGGAGGTGTTGCCGCG
ACCCATTCTGAACATATCCCGGATCGGGGATGTGCCCGTGGAGCCACAGA
CATGGGGCATTGCGCTCAAGTGCTCGGGCACCAGGAATGCCGAGGTTACG
GTCACCATAAATGTGGAGGTCATTCTGGATCGGGCTACCAATAACAATAC
GAATCTGATCTTCAAAAGGAAGAAGATCTGTTTGAGGGAGGAACAGGACA
GTGCGCACGAGGAGTACGACGACGATGACTTGGACTTGCTGCAAACGGCG
CGTAAGGGACATGGCGGAGATATTCACTATGTGGATCGAAACGATGAGCA
TGTGGTCGCCAATGGACACCAGGCGCCGGAGAAGCAACGTCCGGTTGTCA
CAGAGTCGCCAGTGGGCCGTGGAAACTCCGGTGGATCGAAGCGCGACTTT
GACCCGATGCTGAGGGAGAACCTGGTGCCACCGGCCAGTGGCCTGGTTAC
CCTAATTGTGGGTGGCATTCTGGCTCTGGTCCTTGTTTCCACCCTCATCC
TGATAGCCTACTGTGCCAAGGGCCCGTCCAAGCGACATCCTTCGAACGGA
GTGCATCTCATCAAAACCTCTAGCTTCCAGAGACTGCCCACCATATCGTC
GACGGCCCACAACTCGATCTACGTCTGCCCATCGACCATCACTCCTACAT
ATGCCACG
BO08974.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17348-PA | 1833 | drl-RA | 1..942 | 17..958 | 4710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drl-RB | 3104 | CG17348-RB | 388..1329 | 17..958 | 4710 | 100 | Plus |
| drl-RA | 3104 | CG17348-RA | 388..1329 | 17..958 | 4710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19205720..19206556 | 122..958 | 4185 | 100 | Plus |
| 2L | 23513712 | 2L | 19190729..19190835 | 17..123 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:54:14 has no hits.
BO08974.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:15 Download gff for
BO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-PA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:16 Download gff for
BO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17348-PA | 1..942 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:03 Download gff for
BO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 388..1329 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:48:03 Download gff for
BO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 388..1329 | 17..958 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:48:03 Download gff for
BO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
| 2L | 19205721..19206556 | 123..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:03 Download gff for
BO08974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
| arm_2L | 19205721..19206556 | 123..958 | 100 | | Plus |
BO08974.complete Sequence
1864 bp (1864 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638662
> BO08974.complete
GAAGTTATCAGTCGACATGGCCCCCAACTTGCTAACAATCGGATTACTTT
TGACCCTGATCGCCAGCGGTCAGGCCCATCTCAATATTTTCCTCAACTTG
CACGAGGTGCTGCGCCTAATCGGAGTCTCGGCGGAGCTTTACTACGTGCG
GGAGGGCGCCATTAACGACTACGCCTTGAACTTCGCCGTGCCCGTGCCGG
CGAACATCAGTGACGTGACCTTTACGTGGCAATCCCTGGTGGACCATCCG
CTGCCCTACAGCATCAATATCGCCACATCGGACACGGAGGTGTTGCCGCG
ACCCATTCTGAACATATCCCGGATCGGGGATGTGCCCGTGGAGCCACAGA
CATGGGGCATTGCGCTCAAGTGCTCGGGCACCAGGAATGCCGAGGTTACG
GTCACCATAAATGTGGAGGTCATTCTGGATCGGGCTACCAATAACAATAC
GAATCTGATCTTCAAAAGGAAGAAGATCTGTTTGAGGGAGGAACAGGACA
GTGCGCACGAGGAGTACGACGACGATGACTTGGACTTGCTGCAAACGGCG
CGTAAGGGACATGGCGGAGATATTCACTATGTGGATCGAAACGATGAGCA
TGTGGTCGCCAATGGACACCAGGCGCCGGAGAAGCAACGTCCGGTTGTCA
CAGAGTCGCCAGTGGGCCGTGGAAACTCCGGTGGATCGAAGCGCGACTTT
GACCCGATGCTGAGGGAGAACCTGGTGCCACCGGCCAGTGGCCTGGTTAC
CCTAATTGTGGGTGGCATTCTGGCTCTGGTCCTTGTTTCCACCCTCATCC
TGATAGCCTACTGTGCCAAGGGCCCGTCCAAGCGACATCCTTCGAACGGA
GTGCATCTCATCAAAACCTCTAGCTTCCAGAGACTGCCCACCATATCGTC
GACGGCCCACAACTCGATCTACGTCTGCCCATCGACCATCACTCCTACAT
ATGCCACGCTGACGCGGCCCTTTCGCGAATATGAGCATGAGCCTGAGGAG
TTCAACCGCCGTCTCCAAGAGCTGACAGTCCAAAAGTGCCGCGTCCGGCT
CTCCTGCCTCGTCCAGGAGGGAAACTTTGGGCGAATCTATCGCGGCACTT
ATAACGACTGCCAGGAGGTATTGGTCAAGACTGTGGCTCAGCACGCCAGC
CAGCTGCAAGTGAATCTGCTGCTCCAGGAGTCCATGATGCTGTACGAGGC
CTCGCATCCGAATGTCCTCTCCGTTCTGGGCATCTCCATCGAGGACTATG
CCACGCCCTTTGTGCTCTATGCCGCCACCGGAAGTGTGAGGAACCTGAAG
AGCTTCCTGCAGGATCCGTCGTACGCCAGGAGCGTCACCACCATTCAGAC
GGTGCTTATGGGCTCACAACTGGCCATGGCCATGGAGCATCTGCACAACC
ACGGCGTCATCCACAAGGACATTGCGGCCAGAAACTGTGTTATTGATGAT
CAGCTTCGAGTTAAGCTCACTGATAGTGCTTTGAGTCGCGATCTCTTCCC
GGGTGACTACAATTCTCTGGGCGATGGCGAGTACCGACCCATCAAGTGGC
TGTCCTTGGAGGCCCTGCAGAAGTCCCATTACAACGAGGGCAGTGATGTT
TGGTCCTTCGGCGTTCTCATGTGGGAAATGTGCACTCTGGGTAAACTGCC
CTACGCCGAGATCGATCCCTATGAGATGGAGCACTATCTCAAGGATGGAT
ACAGATTGGCCCAGCCATTCAACTGCCCCGATGAGCTCTTCACCATTATG
GCCTATTGTTGGGCCTCCATGCCAGCTGAGCGACCTTCGTTCAGCCAGCT
GCAGATCTGCCTATCGGAGTTCCATACCCAGATTACCAGATATGTTGCAA
GCTTTCTAGACCAT
BO08974.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drl-RB | 1938 | CG17348-PB | 1..1830 | 17..1846 | 9150 | 100 | Plus |
| drl-RA | 1833 | CG17348-PA | 1..1830 | 17..1846 | 9150 | 100 | Plus |
| dnt-RB | 1755 | CG17559-PB | 970..1671 | 1064..1765 | 675 | 73.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drl-RB | 3104 | CG17348-RB | 388..2217 | 17..1846 | 9150 | 100 | Plus |
| drl-RA | 3104 | CG17348-RA | 388..2217 | 17..1846 | 9150 | 100 | Plus |
| dnt-RB | 2639 | CG17559-RB | 1358..2059 | 1064..1765 | 675 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19205720..19207038 | 122..1440 | 6595 | 100 | Plus |
| 2L | 23513712 | 2L | 19207205..19207501 | 1441..1737 | 1485 | 100 | Plus |
| 2L | 23513712 | 2L | 19207626..19207734 | 1738..1846 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 19190729..19190835 | 17..123 | 535 | 100 | Plus |
| 2L | 23513712 | 2L | 19339355..19339651 | 1737..1441 | 390 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:31:18 has no hits.
BO08974.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:56 Download gff for
BO08974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 1..1833 | 17..1850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:54:35 Download gff for
BO08974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 384..2213 | 17..1848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:38 Download gff for
BO08974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 388..2217 | 17..1848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:56 Download gff for
BO08974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 384..2216 | 17..1850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:19:47 Download gff for
BO08974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drl-RA | 388..2217 | 17..1848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:19:47 Download gff for
BO08974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
| 2L | 19205721..19207038 | 123..1440 | 100 | -> | Plus |
| 2L | 19207205..19207501 | 1441..1737 | 100 | -> | Plus |
| 2L | 19207626..19207734 | 1738..1848 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:38 Download gff for
BO08974.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19190729..19190834 | 17..122 | 100 | -> | Plus |
| arm_2L | 19205721..19207038 | 123..1440 | 100 | -> | Plus |
| arm_2L | 19207205..19207501 | 1441..1737 | 100 | -> | Plus |
| arm_2L | 19207626..19207734 | 1738..1848 | 98 | | Plus |
BO08974.pep Sequence
Translation from 16 to 1864
> BO08974.pep
MAPNLLTIGLLLTLIASGQAHLNIFLNLHEVLRLIGVSAELYYVREGAIN
DYALNFAVPVPANISDVTFTWQSLVDHPLPYSINIATSDTEVLPRPILNI
SRIGDVPVEPQTWGIALKCSGTRNAEVTVTINVEVILDRATNNNTNLIFK
RKKICLREEQDSAHEEYDDDDLDLLQTARKGHGGDIHYVDRNDEHVVANG
HQAPEKQRPVVTESPVGRGNSGGSKRDFDPMLRENLVPPASGLVTLIVGG
ILALVLVSTLILIAYCAKGPSKRHPSNGVHLIKTSSFQRLPTISSTAHNS
IYVCPSTITPTYATLTRPFREYEHEPEEFNRRLQELTVQKCRVRLSCLVQ
EGNFGRIYRGTYNDCQEVLVKTVAQHASQLQVNLLLQESMMLYEASHPNV
LSVLGISIEDYATPFVLYAATGSVRNLKSFLQDPSYARSVTTIQTVLMGS
QLAMAMEHLHNHGVIHKDIAARNCVIDDQLRVKLTDSALSRDLFPGDYNS
LGDGEYRPIKWLSLEALQKSHYNEGSDVWSFGVLMWEMCTLGKLPYAEID
PYEMEHYLKDGYRLAQPFNCPDELFTIMAYCWASMPAERPSFSQLQICLS
EFHTQITRYVASFLDH
BO08974.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drl-PB | 645 | CG17348-PB | 1..610 | 1..610 | 3189 | 100 | Plus |
| drl-PA | 610 | CG17348-PA | 1..610 | 1..610 | 3189 | 100 | Plus |
| dnt-PB | 584 | CG17559-PB | 195..584 | 229..610 | 1336 | 65.1 | Plus |
| dnt-PA | 584 | CG17559-PA | 195..584 | 229..610 | 1336 | 65.1 | Plus |
| Drl-2-PC | 648 | CG3915-PC | 352..648 | 310..610 | 615 | 43.9 | Plus |
| dnt-PB | 584 | CG17559-PB | 45..201 | 20..177 | 513 | 62.3 | Plus |
| dnt-PA | 584 | CG17559-PA | 45..201 | 20..177 | 513 | 62.3 | Plus |
