Clone Sequence Records
BO08975.3prime Sequence
928 bp (806 high quality bases) assembled on 2006-01-10
> BO08975.3prime
ATGGTCTAGAAAGCTTGCAGTTGGTTTCATGCCAAACCAACTCATCTTCC
AATTCAATGTGTCGTGTAGCAGCTTTTCCTCCTCGGTTGTCAATTGAAGT
AATGTGGATACGGCACGAACAAGATGGCGAGCTTCCACCTCGCGACTGGT
CAAGAACTTAACAATTACGTGTTTCAAATATTGAAAATTAACTTCGTCCA
TTATGACGCAATTTCCCTTGTCGCCAGTTGAAAATGCCTCCAGCGATGAA
CTTGAGATTCTGTGACCTGGTGTCGTTGTCGGATGAGATTCACTGTCCGT
GGATATCTGCGCACTGCGTAGTTCCTTCTGCACTGTTTTTTTCAAGTCAA
TCAAACGCTGATTCAGTGTTTTTATTGTCTTATTCTTTTCGATTATTTCC
AACTGAACTCGCTCGAATTCGGTCAACTTGTCGGCATTATCCTGTGCTGT
GCTGCTGACCTGCTGCAACGTTTGCCGTGCCTCGGATATATCCCTCACCA
GCTGATTATTCCTCTCCTGGAGGTCGCTGGCTTCGCTGCGCTCCAAGCGC
AGCTGTTGCCGTAAAATGTCTTCGCTCTGGGCGATTTCCGCATTGCGAAG
TATTGCAGTCATTTTCTCCTCTCGTTCGATTTCCAGTTGCATTATGGTTT
CGTCCAGCTGCTCCTGCTTTTCAGTCACCTGAACCCGTAGCTTTTGGGCC
ACCTGCTCGGCATTCGAGGAGTACTCGCTGAACCTGTCATCCGCTGCCGT
GAGACGAGTCTTGAGATCTTTTACCTCTGTTTCCAAATTTTGAGATTTAT
TGCGCTCAAAGAGGACTTGCTGCTCGTTCTCCTCTCGGCACTCTTTCAGG
GCCACACTAAGTTCATCGATTTCCTCCTCCAGCAGCTTGACCTTATCGTC
CCGCTGCTTATTTCATCTTTGGCTTTTC
BO08975.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4840-PA | 1836 | CG4840-RA | 943..1833 | 909..19 | 4455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-RA | 2257 | CG4840-RA | 1163..2072 | 927..19 | 4525 | 99.9 | Minus |
| cbs-RB | 2233 | CG4840-RB | 1163..2048 | 927..19 | 4155 | 97.3 | Minus |
| cbs-RC | 2227 | CG4840-RC | 1163..1924 | 927..167 | 3785 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13452322..13452735 | 792..379 | 2070 | 100 | Minus |
| 2R | 25286936 | 2R | 13452789..13453032 | 380..137 | 1220 | 100 | Minus |
| 2R | 25286936 | 2R | 13453087..13453208 | 140..19 | 610 | 100 | Minus |
| 2R | 25286936 | 2R | 13451926..13452026 | 893..793 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:17:42 has no hits.
BO08975.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:15 Download gff for
BO08975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4840-PA | 922..1836 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:17 Download gff for
BO08975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4840-PA | 922..1836 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:43:05 Download gff for
BO08975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 1161..2076 | 14..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:54 Download gff for
BO08975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 1161..2076 | 14..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:54 Download gff for
BO08975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13451837..13451875 | 892..928 | 94 | -> | Minus |
| 2R | 13451928..13452026 | 793..891 | 100 | -> | Minus |
| 2R | 13452322..13452735 | 379..792 | 100 | -> | Minus |
| 2R | 13452791..13453030 | 139..378 | 100 | -> | Minus |
| 2R | 13453089..13453212 | 14..138 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:43:05 Download gff for
BO08975.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9339342..9339380 | 892..928 | 94 | -> | Minus |
| arm_2R | 9339433..9339531 | 793..891 | 100 | -> | Minus |
| arm_2R | 9339827..9340240 | 379..792 | 100 | -> | Minus |
| arm_2R | 9340296..9340535 | 139..378 | 100 | -> | Minus |
| arm_2R | 9340594..9340717 | 14..138 | 98 | | Minus |
BO08975.5prime Sequence
800 bp (796 high quality bases) assembled on 2006-01-10
> BO08975.5prime
GAAGTTATCAGTCGACATGTTTGCTACACTGAAAAACAAGATCAAGGAGG
AAACTGGCGATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAAC
AACAACAACAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAA
CTCAGCTGATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAAT
TGTGCGAGCTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACC
GTCACGCAGGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAA
GACCAACGAGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGG
ACATATACTGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAG
ATTGACAAGCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGA
TCGCATGGGTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCG
AGGAACTAGAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGC
GACGAACTAGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCT
GACCACAACACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGC
GCATGAAAATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAAC
TCCGAGCAACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACA
GCACTTAGAGGAGGCCCATCTGCAGTTGTCGGACATCAAAGGCTCGTGGA
BO08975.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4840-PA | 1836 | CG4840-RA | 1..784 | 17..800 | 3920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-RC | 2227 | CG4840-RC | 240..1023 | 17..800 | 3920 | 100 | Plus |
| cbs-RB | 2233 | CG4840-RB | 240..1023 | 17..800 | 3920 | 100 | Plus |
| cbs-RA | 2257 | CG4840-RA | 240..1023 | 17..800 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13451088..13451699 | 189..800 | 3060 | 100 | Plus |
| 2R | 25286936 | 2R | 13450825..13450998 | 17..190 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:04:03 has no hits.
BO08975.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:16 Download gff for
BO08975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4840-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:19 Download gff for
BO08975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4840-PA | 1..783 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:27:51 Download gff for
BO08975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1022 | 17..799 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:52 Download gff for
BO08975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1022 | 17..799 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:52 Download gff for
BO08975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13450825..13450998 | 17..190 | 100 | -> | Plus |
| 2R | 13451090..13451698 | 191..799 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:27:51 Download gff for
BO08975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9338330..9338503 | 17..190 | 100 | -> | Plus |
| arm_2R | 9338595..9339203 | 191..799 | 100 | | Plus |
BO08975.complete Sequence
1867 bp (1867 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638663
> BO08975.complete
GAAGTTATCAGTCGACATGTTTGCTACACTGAAAAACAAGATCAAGGAGG
AAACTGGCGATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAAC
AACAACAACAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAA
CTCAGCTGATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAAT
TGTGCGAGCTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACC
GTCACGCAGGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAA
GACCAACGAGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGG
ACATATACTGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAG
ATTGACAAGCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGA
TCGCATGGGTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCG
AGGAACTAGAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGC
GACGAACTAGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCT
GACCACAACACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGC
GCATGAAAATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAAC
TCCGAGCAACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACA
GCACTTAGAGGAGGCCCATCTGCAGTTGTCGGACATCAAAGGCTCGTGGA
GTGGCCAGAATCTGGCGCTGGAAACCCAAGTTAGTCGTCTATCCAAGCAA
GTGGCCGAAGAGACCACCGAAAAGCGAAAGGCCCTTAAATCCCGCGACGA
TGCCATTGAAAGCCGCAAGCAGGTATCATTCGAACTCGAAAAAGCCAAAG
ATGAAATAAAGCAGCGGGACGATAAGGTCAAGCTGCTGGAGGAGGAAATC
GATGAACTTAGTGTGGCCCTGAAAGAGTGCCGAGAGGAGAACGAGCAGCA
AGTCCTCTTTGAGCGCAATAAATCTCAAAATTTGGAAACAGAGGTAAAAG
ATCTCAAGACTCGTCTCACGGCAGCGGATGACAGGTTCAGCGAGTACTCC
TCGAATGCCGAGCAGGTGGCCCAAAAGCTACGGGTTCAGGTGACTGAAAA
GCAGGAGCAGCTGGACGAAACCATAATGCAACTGGAAATCGAACGAGAGG
AGAAAATGACTGCAATACTTCGCAATGCGGAAATCGCCCAGAGCGAAGAC
ATTTTACGGCAACAGCTGCGCTTGGAGCGCAGCGAAGCCAGCGACCTCCA
GGAGAGGAATAATCAGCTGGTGAGGGATATATCCGAGGCACGGCAAACGT
TGCAGCAGGTCAGCAGCACAGCACAGGATAATGCCGACAAGTTGACCGAA
TTCGAGCGAGTTCAGTTGGAAATAATCGAAAAGAATAAGACAATAAAAAC
ACTGAATCAGCGTTTGATTGACTTGAAAAAAACAGTGCAGAAGGAACTAC
GCAGTGCGCAGATATCCACGGACAGTGAATCTCATCCGACAACGACACCA
GGTCACAGAATCTCAAGTTCATCGCTGGAGGCATTTTCAACTGGCGACAA
GGGAAATTGCGTCATAATGGACGAAGTTAATTTTCAATATTTGAAACACG
TAATTGTTAAGTTCTTGACCAGTCGCGAGGTGGAAGCTCGCCATCTTGTT
CGTGCCGTATCCACATTACTTCAATTGACAACCGAGGAGGAAAAGCTGCT
ACACGACACATTGAATTGGAAGATGAGTTGGTTTGGCATGAAACCAACTG
CAAGCTTTCTAGACCAT
BO08975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-RA | 1836 | CG4840-PA | 1..1833 | 17..1849 | 9165 | 100 | Plus |
| cbs-RB | 1812 | CG4840-PB | 1..1691 | 17..1707 | 8455 | 100 | Plus |
| cbs-RC | 1806 | CG4840-PC | 1..1685 | 17..1701 | 8425 | 100 | Plus |
| cbs-RB | 1812 | CG4840-PB | 1690..1809 | 1730..1849 | 600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-RA | 2257 | CG4840-RA | 240..2072 | 17..1849 | 9165 | 100 | Plus |
| cbs-RB | 2233 | CG4840-RB | 240..1930 | 17..1707 | 8455 | 100 | Plus |
| cbs-RC | 2227 | CG4840-RC | 240..1924 | 17..1701 | 8425 | 100 | Plus |
| cbs-RB | 2233 | CG4840-RB | 1929..2048 | 1730..1849 | 600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13451088..13451877 | 189..978 | 3950 | 100 | Plus |
| 2R | 25286936 | 2R | 13452322..13452735 | 1076..1489 | 2070 | 100 | Plus |
| 2R | 25286936 | 2R | 13452789..13453032 | 1488..1731 | 1220 | 100 | Plus |
| 2R | 25286936 | 2R | 13450825..13450998 | 17..190 | 870 | 100 | Plus |
| 2R | 25286936 | 2R | 13453087..13453208 | 1728..1849 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 13451926..13452026 | 975..1075 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:11:29 has no hits.
BO08975.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:57 Download gff for
BO08975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 1..1836 | 17..1853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:09 Download gff for
BO08975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 162..1998 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:52 Download gff for
BO08975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 246..2072 | 23..1851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:57 Download gff for
BO08975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 162..1998 | 17..1854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:19 Download gff for
BO08975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 246..2072 | 23..1851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:19 Download gff for
BO08975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13453089..13453208 | 1730..1851 | 98 | | Plus |
| 2R | 13450831..13450998 | 23..190 | 100 | -> | Plus |
| 2R | 13451090..13451875 | 191..976 | 100 | -> | Plus |
| 2R | 13451928..13452026 | 977..1075 | 100 | -> | Plus |
| 2R | 13452322..13452735 | 1076..1489 | 100 | -> | Plus |
| 2R | 13452791..13453030 | 1490..1729 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:52 Download gff for
BO08975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9338336..9338503 | 23..190 | 100 | -> | Plus |
| arm_2R | 9338595..9339380 | 191..976 | 100 | -> | Plus |
| arm_2R | 9339433..9339531 | 977..1075 | 100 | -> | Plus |
| arm_2R | 9339827..9340240 | 1076..1489 | 100 | -> | Plus |
| arm_2R | 9340296..9340535 | 1490..1729 | 100 | -> | Plus |
| arm_2R | 9340594..9340713 | 1730..1851 | 98 | | Plus |
BO08975.pep Sequence
Translation from 16 to 1867
> BO08975.pep
MFATLKNKIKEETGDDVVQSANQRYPGNNNNNYRLRSRRVSINSNSADDV
GGGGFYNESEQLCELRSQCNELTTKLSTVTQGLQQLQEEKTRVDKTNEIL
LESVRVAQTQKDIYCEEQEKIQNLQQIEIDKLKNLLSFREQESVDRMGLM
RQQTQQIESLSEELERLRPIESVAEDLRDELEQLRHSTQQEKNLLTTTLA
AVQEENRHLKKRMKIVEESRLESLGKLNSEQQVQALIREHKLLEQHLEEA
HLQLSDIKGSWSGQNLALETQVSRLSKQVAEETTEKRKALKSRDDAIESR
KQVSFELEKAKDEIKQRDDKVKLLEEEIDELSVALKECREENEQQVLFER
NKSQNLETEVKDLKTRLTAADDRFSEYSSNAEQVAQKLRVQVTEKQEQLD
ETIMQLEIEREEKMTAILRNAEIAQSEDILRQQLRLERSEASDLQERNNQ
LVRDISEARQTLQQVSSTAQDNADKLTEFERVQLEIIEKNKTIKTLNQRL
IDLKKTVQKELRSAQISTDSESHPTTTPGHRISSSSLEAFSTGDKGNCVI
MDEVNFQYLKHVIVKFLTSREVEARHLVRAVSTLLQLTTEEEKLLHDTLN
WKMSWFGMKPTASFLDH
BO08975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-PA | 611 | CG4840-PA | 1..611 | 1..611 | 3018 | 100 | Plus |
| cbs-PB | 603 | CG4840-PB | 1..603 | 1..611 | 2961 | 98.7 | Plus |
| cbs-PC | 601 | CG4840-PC | 1..601 | 1..611 | 2951 | 98.4 | Plus |
| Rootletin-PF | 2048 | CG6129-PF | 810..1304 | 53..511 | 225 | 21.2 | Plus |
| Rootletin-PE | 2048 | CG6129-PE | 810..1304 | 53..511 | 225 | 21.2 | Plus |
| Rootletin-PF | 2048 | CG6129-PF | 599..1013 | 55..478 | 178 | 19.7 | Plus |
