Clone Sequence Records
BO08977.3prime Sequence
905 bp (826 high quality bases) assembled on 2006-01-10
> BO08977.3prime
ATGGTCTAGAAAGCTTGCAAACTCAAACATTTTATTCTTGCTTTTACGCG
TCTGCTGTTCCTTGCTTAAGCTGCGTTCCTGTGCCTGCAGCGTGGCTAGC
TCCTGTTTGTGGCTTTGCATCTGCACTTGTAGTCGCTTCTGGAGCTGCGC
ATCTCCAGAATTCCGGTCCAGGGACTGTTTAACCTTGGCCATATCTCTTT
GCTTTCGGCGGATTTCATCAGCAATTCGCACTGTTTCCACGTTAAGAGTT
TTGGTTGAGTGCTGCTGTAGCTCGTTGGTCTTAGCTTTCTTGGTCACCTG
CTCGCCTTGCTGAGTGCTTTCTCCAGGCCCCAAAACACTGTCGTTTAAGA
ATGTAAAGACATCCACACGTTGTGACTCACGGACGTAGGCCTTCTCATCA
GCCTTTCGCTGTCGTCGCTGGGCGCGCTTTAGCTTTCGTTCCACGCTAAA
ATAATCCTTGTCCCCGTTGGCGGCCTCACGCAGCTCCATGCAGGCATCTA
GAGATCGACCCTGGGGAAGTATCTGGGCGCTTACCGGGGTGACGATTCCC
CTTCCATCTGAGCCAAGACCAGTACCATGGATGTAACCCATTTTCTCCAT
AAGCTTAGAGCCGATGCCCCGTGTGAACTCCTCCCAGGCGCCAAGTCGTT
CCGTCGGCTTAAAGGTAAACAAACTCAACTCGACCATGCGTGCTCTTCTA
GCTTCCTCCAGATCATCCATATCCGACTCCGCCTCGTCACTGCTGTTGTC
GTTCATGCTGGAGTTGCTCTCCTCGCTGGAGAGCTCGTCATCCTCATCCT
GATCGGTGGTAAGTGGATACAGTTCTTCGAACTTGAAGTCTCGTTCCCGC
TCCTTGTGATCCTGCCCATCCAAGCGGACGCGGCATATCTGCTCTACAAA
ATTTA
BO08977.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-PA | 1542 | CG4709-RA | 653..1539 | 905..19 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1731 | CG4709-RB | 842..1728 | 905..19 | 4420 | 99.9 | Minus |
CG4709-RA | 1602 | CG4709-RA | 713..1599 | 905..19 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9955573..9956173 | 619..19 | 3005 | 100 | Minus |
2L | 23513712 | 2L | 9955227..9955514 | 905..618 | 1425 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-11 17:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2784..2819 | 769..734 | 108 | 77.8 | Minus |
BO08977.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:19 Download gff for
BO08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 654..1542 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:23 Download gff for
BO08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 654..1542 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:04 Download gff for
BO08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 714..1602 | 15..904 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:14 Download gff for
BO08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 714..1602 | 15..904 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:14 Download gff for
BO08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9955228..9955513 | 619..904 | 99 | -> | Minus |
2L | 9955574..9956176 | 15..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:04 Download gff for
BO08977.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9955228..9955513 | 619..904 | 99 | -> | Minus |
arm_2L | 9955574..9956176 | 15..618 | 99 | | Minus |
BO08977.5prime Sequence
936 bp (743 high quality bases) assembled on 2006-01-10
> BO08977.5prime
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
GATATGGATGATCTGGAGGAAGCTAGAAGAGCACGCATGGTCGAGTTGAG
TTTGTTTACCTTTAAGCCGACCGAACGACTTGGCGC
BO08977.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-PA | 1542 | CG4709-RA | 1..920 | 17..936 | 4575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1731 | CG4709-RB | 190..1109 | 17..936 | 4585 | 99.9 | Plus |
CG4709-RA | 1602 | CG4709-RA | 61..980 | 17..936 | 4585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9954592..9955494 | 34..936 | 4485 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:53:44 has no hits.
BO08977.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:20 Download gff for
BO08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:24 Download gff for
BO08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:12 Download gff for
BO08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..980 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:11 Download gff for
BO08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..980 | 17..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:11 Download gff for
BO08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
2L | 9954596..9955494 | 38..936 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:12 Download gff for
BO08977.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
arm_2L | 9954596..9955494 | 38..936 | 99 | | Plus |
BO08977.complete Sequence
1573 bp (1573 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631339
> BO08977.complete
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
GATATGGATGATCTGGAGGAAGCTAGAAGAGCACGCATGGTCGAGTTGAG
TTTGTTTACCTTTAAGCCGACGGAACGACTTGGCGCCTGGGAGGAGTTCA
CACGGGGCATCGGCTCTAAGCTTATGGAGAAAATGGGTTACATCCATGGT
ACTGGTCTTGGCTCAGATGGAAGGGGAATCGTCACCCCGGTAAGCGCCCA
GATACTTCCCCAGGGTCGATCTCTAGATGCCTGCATGGAGCTGCGTGAGG
CCGCCAACGGGGACAAGGATTATTTTAGCGTGGAACGAAAGCTAAAGCGC
GCCCAGCGACGACAGCGAAAGGCTGATGAGAAGGCCTACGTCCGTGAGTC
ACAACGTGTGGATGTCTTTACATTCTTAAACGACAGTGTTTTGGGGCCTG
GAGAAAGCACTCAGCAAGGCGAGCAGGTGACCAAGAAAGCTAAGACCAAC
GAGCTACAGCAGCACTCAACCAAAACTCTTAACGTGGAAACAGTGCGAAT
TGCTGATGAAATCCGCCGAAAGCAAAGAGATATGGCCAAGGTTAAACAGT
CCCTGGACCGGAATTCTGGAGATGCGCAGCTCCAGAAGCGACTACAAGTG
CAGATGCAAAGCCACAAACAGGAGCTAGCCACGCTGCAGGCACAGGAACG
CAGCTTAAGCAAGGAACAGCAGACGCGTAAAAGCAAGAATAAAATGTTTG
AGTTTGCAAGCTTTCTAGACCAT
BO08977.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1542 | CG4709-PB | 1..1539 | 17..1555 | 7695 | 100 | Plus |
CG4709-RA | 1542 | CG4709-PA | 1..1539 | 17..1555 | 7695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-RB | 1731 | CG4709-RB | 190..1728 | 17..1555 | 7695 | 100 | Plus |
CG4709-RA | 1602 | CG4709-RA | 61..1599 | 17..1555 | 7695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9954592..9955514 | 34..956 | 4600 | 99.9 | Plus |
2L | 23513712 | 2L | 9955573..9956173 | 955..1555 | 3005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:43:09 has no hits.
BO08977.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:13 Download gff for
BO08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 1..1542 | 17..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:18 Download gff for
BO08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 66..1610 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:14 Download gff for
BO08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..1599 | 17..1557 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:13 Download gff for
BO08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 66..1610 | 17..1560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:50 Download gff for
BO08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4709-RA | 61..1599 | 17..1557 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:50 Download gff for
BO08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
2L | 9954596..9955513 | 38..955 | 100 | -> | Plus |
2L | 9955574..9956173 | 956..1557 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:14 Download gff for
BO08977.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9954596..9955513 | 38..955 | 100 | -> | Plus |
arm_2L | 9954514..9954534 | 17..37 | 100 | -> | Plus |
arm_2L | 9955574..9956173 | 956..1557 | 99 | | Plus |
BO08977.pep Sequence
Translation from 16 to 1573
> BO08977.pep
MEEYEAQLLVVEQALENAADDAQRQDLLALKNNLQELLALTRESGDEAPI
DELPQQGDNLDDELQRLKSELNDLEAAGSSQTALDEERQLADLRTKYTAM
VGEKCSAPHEHSWGTCYHNALICGVDDEVVMNSEGVLDARLRVLFTNPTH
REMLPCSYYLEGECRFDEAKCRFSHGALVTGSSIRKYNPPDFHKLSRSRP
VFALLPDRLWHRGRVLCVNFVEQICRVRLDGQDHKERERDFKFEELYPLT
TDQDEDDELSSEESNSSMNDNSSDEAESDMDDLEEARRARMVELSLFTFK
PTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQG
RSLDACMELREAANGDKDYFSVERKLKRAQRRQRKADEKAYVRESQRVDV
FTFLNDSVLGPGESTQQGEQVTKKAKTNELQQHSTKTLNVETVRIADEIR
RKQRDMAKVKQSLDRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKE
QQTRKSKNKMFEFASFLDH
BO08977.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4709-PB | 513 | CG4709-PB | 1..513 | 1..513 | 2637 | 100 | Plus |
CG4709-PA | 513 | CG4709-PA | 1..513 | 1..513 | 2637 | 100 | Plus |