Clone BO08977 Report

Search the DGRC for BO08977

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG4709-RA
Protein status:BO08977.pep: validated full length
Sequenced Size:1573

Clone Sequence Records

BO08977.3prime Sequence

905 bp (826 high quality bases) assembled on 2006-01-10

> BO08977.3prime
ATGGTCTAGAAAGCTTGCAAACTCAAACATTTTATTCTTGCTTTTACGCG
TCTGCTGTTCCTTGCTTAAGCTGCGTTCCTGTGCCTGCAGCGTGGCTAGC
TCCTGTTTGTGGCTTTGCATCTGCACTTGTAGTCGCTTCTGGAGCTGCGC
ATCTCCAGAATTCCGGTCCAGGGACTGTTTAACCTTGGCCATATCTCTTT
GCTTTCGGCGGATTTCATCAGCAATTCGCACTGTTTCCACGTTAAGAGTT
TTGGTTGAGTGCTGCTGTAGCTCGTTGGTCTTAGCTTTCTTGGTCACCTG
CTCGCCTTGCTGAGTGCTTTCTCCAGGCCCCAAAACACTGTCGTTTAAGA
ATGTAAAGACATCCACACGTTGTGACTCACGGACGTAGGCCTTCTCATCA
GCCTTTCGCTGTCGTCGCTGGGCGCGCTTTAGCTTTCGTTCCACGCTAAA
ATAATCCTTGTCCCCGTTGGCGGCCTCACGCAGCTCCATGCAGGCATCTA
GAGATCGACCCTGGGGAAGTATCTGGGCGCTTACCGGGGTGACGATTCCC
CTTCCATCTGAGCCAAGACCAGTACCATGGATGTAACCCATTTTCTCCAT
AAGCTTAGAGCCGATGCCCCGTGTGAACTCCTCCCAGGCGCCAAGTCGTT
CCGTCGGCTTAAAGGTAAACAAACTCAACTCGACCATGCGTGCTCTTCTA
GCTTCCTCCAGATCATCCATATCCGACTCCGCCTCGTCACTGCTGTTGTC
GTTCATGCTGGAGTTGCTCTCCTCGCTGGAGAGCTCGTCATCCTCATCCT
GATCGGTGGTAAGTGGATACAGTTCTTCGAACTTGAAGTCTCGTTCCCGC
TCCTTGTGATCCTGCCCATCCAAGCGGACGCGGCATATCTGCTCTACAAA
ATTTA

BO08977.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PA 1542 CG4709-RA 653..1539 905..19 4410 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1731 CG4709-RB 842..1728 905..19 4420 99.9 Minus
CG4709-RA 1602 CG4709-RA 713..1599 905..19 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9955573..9956173 619..19 3005 100 Minus
2L 23513712 2L 9955227..9955514 905..618 1425 99.7 Minus
Blast to na_te.dros performed 2015-02-11 17:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2784..2819 769..734 108 77.8 Minus

BO08977.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:19 Download gff for BO08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 654..1542 15..904 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:23 Download gff for BO08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 654..1542 15..904 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:27:04 Download gff for BO08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 714..1602 15..904 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:14 Download gff for BO08977.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 714..1602 15..904 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:14 Download gff for BO08977.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9955228..9955513 619..904 99 -> Minus
2L 9955574..9956176 15..618 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:27:04 Download gff for BO08977.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9955228..9955513 619..904 99 -> Minus
arm_2L 9955574..9956176 15..618 99   Minus

BO08977.5prime Sequence

936 bp (743 high quality bases) assembled on 2006-01-10

> BO08977.5prime
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
GATATGGATGATCTGGAGGAAGCTAGAAGAGCACGCATGGTCGAGTTGAG
TTTGTTTACCTTTAAGCCGACCGAACGACTTGGCGC

BO08977.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PA 1542 CG4709-RA 1..920 17..936 4575 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1731 CG4709-RB 190..1109 17..936 4585 99.9 Plus
CG4709-RA 1602 CG4709-RA 61..980 17..936 4585 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9954592..9955494 34..936 4485 99.8 Plus
Blast to na_te.dros performed on 2015-02-13 07:53:44 has no hits.

BO08977.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:20 Download gff for BO08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 1..920 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:24 Download gff for BO08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-PA 1..920 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:51:12 Download gff for BO08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..980 17..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:58:11 Download gff for BO08977.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..980 17..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:58:11 Download gff for BO08977.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9954514..9954534 17..37 100 -> Plus
2L 9954596..9955494 38..936 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:51:12 Download gff for BO08977.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9954514..9954534 17..37 100 -> Plus
arm_2L 9954596..9955494 38..936 99   Plus

BO08977.complete Sequence

1573 bp (1573 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631339

> BO08977.complete
GAAGTTATCAGTCGACATGGAAGAATACGAAGCACAATTGCTCGTTGTGG
AGCAGGCATTGGAAAATGCCGCGGATGATGCGCAACGCCAGGATCTTTTG
GCCCTAAAGAACAATCTGCAGGAGCTGTTGGCCCTCACCCGGGAATCAGG
AGATGAAGCACCAATCGATGAACTACCTCAGCAGGGCGACAATCTGGATG
ATGAGCTGCAGCGGCTCAAAAGCGAACTTAATGACCTAGAGGCGGCCGGC
TCCTCACAAACCGCGTTGGATGAAGAACGCCAGCTGGCTGACTTGCGAAC
CAAGTACACCGCCATGGTGGGCGAGAAGTGCTCCGCACCACACGAGCACA
GTTGGGGCACCTGCTACCACAATGCCCTCATCTGCGGAGTGGACGACGAG
GTGGTTATGAACAGCGAAGGCGTCTTGGATGCTCGACTAAGGGTTCTCTT
TACGAATCCCACGCATCGAGAAATGCTGCCCTGTTCGTATTACCTCGAAG
GCGAGTGCCGCTTTGATGAGGCCAAGTGTCGCTTTTCCCATGGCGCCCTT
GTCACCGGTAGCTCCATTAGAAAATATAATCCACCCGATTTCCACAAACT
CTCCCGCAGTCGTCCAGTTTTTGCCCTGCTACCAGATCGATTGTGGCATC
GAGGTCGTGTCCTTTGTGTAAATTTCGTAGAGCAGATATGCCGCGTCCGC
TTGGATGGGCAGGATCACAAGGAGCGGGAACGAGACTTCAAGTTCGAAGA
ACTGTATCCACTTACCACCGATCAGGATGAGGATGACGAGCTCTCCAGCG
AGGAGAGCAACTCCAGCATGAACGACAACAGCAGTGACGAGGCGGAGTCG
GATATGGATGATCTGGAGGAAGCTAGAAGAGCACGCATGGTCGAGTTGAG
TTTGTTTACCTTTAAGCCGACGGAACGACTTGGCGCCTGGGAGGAGTTCA
CACGGGGCATCGGCTCTAAGCTTATGGAGAAAATGGGTTACATCCATGGT
ACTGGTCTTGGCTCAGATGGAAGGGGAATCGTCACCCCGGTAAGCGCCCA
GATACTTCCCCAGGGTCGATCTCTAGATGCCTGCATGGAGCTGCGTGAGG
CCGCCAACGGGGACAAGGATTATTTTAGCGTGGAACGAAAGCTAAAGCGC
GCCCAGCGACGACAGCGAAAGGCTGATGAGAAGGCCTACGTCCGTGAGTC
ACAACGTGTGGATGTCTTTACATTCTTAAACGACAGTGTTTTGGGGCCTG
GAGAAAGCACTCAGCAAGGCGAGCAGGTGACCAAGAAAGCTAAGACCAAC
GAGCTACAGCAGCACTCAACCAAAACTCTTAACGTGGAAACAGTGCGAAT
TGCTGATGAAATCCGCCGAAAGCAAAGAGATATGGCCAAGGTTAAACAGT
CCCTGGACCGGAATTCTGGAGATGCGCAGCTCCAGAAGCGACTACAAGTG
CAGATGCAAAGCCACAAACAGGAGCTAGCCACGCTGCAGGCACAGGAACG
CAGCTTAAGCAAGGAACAGCAGACGCGTAAAAGCAAGAATAAAATGTTTG
AGTTTGCAAGCTTTCTAGACCAT

BO08977.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1542 CG4709-PB 1..1539 17..1555 7695 100 Plus
CG4709-RA 1542 CG4709-PA 1..1539 17..1555 7695 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-RB 1731 CG4709-RB 190..1728 17..1555 7695 100 Plus
CG4709-RA 1602 CG4709-RA 61..1599 17..1555 7695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9954592..9955514 34..956 4600 99.9 Plus
2L 23513712 2L 9955573..9956173 955..1555 3005 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:43:09 has no hits.

BO08977.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:13 Download gff for BO08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 1..1542 17..1559 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:18 Download gff for BO08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 66..1610 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:14 Download gff for BO08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..1599 17..1557 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:13 Download gff for BO08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 66..1610 17..1560 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:50 Download gff for BO08977.complete
Subject Subject Range Query Range Percent Splice Strand
CG4709-RA 61..1599 17..1557 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:50 Download gff for BO08977.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9954514..9954534 17..37 100 -> Plus
2L 9954596..9955513 38..955 100 -> Plus
2L 9955574..9956173 956..1557 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:14 Download gff for BO08977.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9954596..9955513 38..955 100 -> Plus
arm_2L 9954514..9954534 17..37 100 -> Plus
arm_2L 9955574..9956173 956..1557 99   Plus

BO08977.pep Sequence

Translation from 16 to 1573

> BO08977.pep
MEEYEAQLLVVEQALENAADDAQRQDLLALKNNLQELLALTRESGDEAPI
DELPQQGDNLDDELQRLKSELNDLEAAGSSQTALDEERQLADLRTKYTAM
VGEKCSAPHEHSWGTCYHNALICGVDDEVVMNSEGVLDARLRVLFTNPTH
REMLPCSYYLEGECRFDEAKCRFSHGALVTGSSIRKYNPPDFHKLSRSRP
VFALLPDRLWHRGRVLCVNFVEQICRVRLDGQDHKERERDFKFEELYPLT
TDQDEDDELSSEESNSSMNDNSSDEAESDMDDLEEARRARMVELSLFTFK
PTERLGAWEEFTRGIGSKLMEKMGYIHGTGLGSDGRGIVTPVSAQILPQG
RSLDACMELREAANGDKDYFSVERKLKRAQRRQRKADEKAYVRESQRVDV
FTFLNDSVLGPGESTQQGEQVTKKAKTNELQQHSTKTLNVETVRIADEIR
RKQRDMAKVKQSLDRNSGDAQLQKRLQVQMQSHKQELATLQAQERSLSKE
QQTRKSKNKMFEFASFLDH

BO08977.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4709-PB 513 CG4709-PB 1..513 1..513 2637 100 Plus
CG4709-PA 513 CG4709-PA 1..513 1..513 2637 100 Plus