Clone Sequence Records
BO08981.3prime Sequence
859 bp (841 high quality bases) assembled on 2006-01-10
> BO08981.3prime
ATGGTCTAGAAAGCTTGCAAGTTGTAGCCGCTTAATGTCTTCTATACGAA
AGTCATTTCTTAACGTTAAAAATGTGCGAACTTCGTTAGGTGTGAGATGC
CAAGATGACATCTCTTTGTTATTCTCCGGATTCCAGTACTCCGATAGCTC
CGTAATCTTGTCCAGATTGAGGAGCGTAGCTATTTGGGATATACGTGTCA
TCTTATCTCGAACCGACCACGATGTAGCTCCTGTTAGATAACTTCCCAAG
GCACGAACTTCCTGATCAAGCACCAAACCGCCAAGTCTATTAAAGCTGAT
TTTCTTAATAGCCCGTTCCAATTGAATAGTCACTTCGGTCGCCAAAATGC
TAACGAGTGCATCATAGTTGCGCGGACTCAACGAGTTCTTAAAAGAGTTA
AGTAGTCCATCCAATTGCACTATGAAGAACTGGACAAATGTCTCCCCAGC
TTCGTAAGCAGCAAGTTCCTCCTCATTCAAATTGTGACTGTAGTTCAGGA
ACTGATTGATCCAGGGATTAAGGCGTGGCTTTATGACACTGGATCGCAGC
TGCTGCATTCCAAAATCAACGGTGGCTTTCAACGCGTCCCGCACAGCTTT
AAGTTCCGTGAGGCAACTGTCCAGCATTTGACGCTCCACCTGGGTCGTTT
GTGGAAATGTGCCAGCAATTTCCTGTTCCATCGTCTGACACAAGGTCTCA
ATATACTCTGTCGATATGTCGGCATTGTTCAGCTGAACCAAGAAATTGGC
TCGACCTCGATCGGCATCACTGGAATGTAGTTTTCCCTGCTGCAGCGATG
TTTGTATAGCATTATATGCCTGGGCCAAGTCGATGTAGCCCGAGGGATAG
CCGCTTTTT
BO08981.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-PA | 2331 | CG7456-RA | 1489..2328 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-RA | 2666 | CG7456-RA | 1614..2453 | 858..19 | 4200 | 100 | Minus |
| Grip75-RA | 2141 | CG6176-RA | 2035..2076 | 19..60 | 210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:35:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10486397..10486784 | 471..858 | 1940 | 100 | Plus |
| 2L | 23513712 | 2L | 10485855..10486081 | 59..285 | 1135 | 100 | Plus |
| 2L | 23513712 | 2L | 10486152..10486339 | 286..473 | 940 | 100 | Plus |
| 2L | 23513712 | 2L | 10485751..10485792 | 19..60 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:35:41 has no hits.
BO08981.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:25 Download gff for
BO08981.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-PA | 1488..2331 | 18..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:32 Download gff for
BO08981.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-PA | 1488..2331 | 18..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:15:57 Download gff for
BO08981.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 1613..2458 | 13..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:28 Download gff for
BO08981.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 1613..2458 | 13..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:28 Download gff for
BO08981.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10485746..10485790 | 13..58 | 93 | <- | Plus |
| 2L | 10485855..10486081 | 59..285 | 100 | <- | Plus |
| 2L | 10486152..10486337 | 286..471 | 100 | <- | Plus |
| 2L | 10486398..10486784 | 472..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:15:57 Download gff for
BO08981.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10485746..10485790 | 13..58 | 93 | <- | Plus |
| arm_2L | 10485855..10486081 | 59..285 | 100 | <- | Plus |
| arm_2L | 10486152..10486337 | 286..471 | 100 | <- | Plus |
| arm_2L | 10486398..10486784 | 472..859 | 99 | | Plus |
BO08981.5prime Sequence
833 bp (745 high quality bases) assembled on 2006-01-10
> BO08981.5prime
GAAGTTATCAGTCGACATGAGTGTTCTGGAACAGCTGGGTGCTCTAGATA
TCGGTACAAATGAGCAGGTGGACGAAACGCTGCAGCGGATTGCCGACGAA
GAGGCAAAAGTTAACGAGAAACTGGAGTCGCTGCTGGCCAAACAATGCCA
GATTGAGGCCAAAATGAGTGGCATTGGGCGATCACTCAGCCTGCTTCACA
CGGTGGACAGCGATTCCAACAAGCTGAACGACCAGATCGTAAACACTGCC
CAGTTGGCCGAATCGGTGAGCGCCAAGGTGCGCCGTTTGGATTTGGCCAG
GTGCCGTGCCTCCGAGTGCCAGCAGCGGGTGCACGATCTGATCGACCTGC
ATCTGTGTAGCCAGGGCGTGGTGAAGGCCATCGGCGAGGAGGACTACGAG
AAGAGTGCCACCCACATTGCCCGCTTCCTGGCGATGGATCAGCAATTGCT
GCGGCGCACCGCCGACGACGTTCAGGGCTCCATAACGTCGGTTAGCGATG
CGGTCAAGACGCTGGAGGATGCCACCGAGAAGACCCGCGTGCTGATTGCC
AAGCGCTTCGATGAGGCAGTCAAAGCCGATGATTTGGCCTCTGTGGAAAG
ATTCTTCAAAATCTTTCCACTAGTCGGTTGCCATCGCACCGGAATCGAAA
AGTTCTCGCTCTACATTTGCCAAAAGCTGGCAAACAAGGCGCAGAAGGAA
CTAAGGAACGCCCAGGACATAGCCAAGGCGGAATCGCGCCTGCAATTGGC
CTACGCAGATCGGCTGACTGCTATTTTGGAAAACTTCGCCAGGGTGGTGG
AAGTCAATCAGCCGATAATCGAAGCCCTTTACG
BO08981.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-PA | 2331 | CG7456-RA | 1..817 | 17..833 | 4060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-RA | 2666 | CG7456-RA | 126..942 | 17..833 | 4070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10487624..10488355 | 833..102 | 3645 | 99.9 | Minus |
| 2L | 23513712 | 2L | 10488410..10488497 | 104..17 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:50:33 has no hits.
BO08981.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:26 Download gff for
BO08981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:33 Download gff for
BO08981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:52:00 Download gff for
BO08981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 119..942 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:15 Download gff for
BO08981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 119..942 | 9..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:15 Download gff for
BO08981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10488411..10488504 | 9..103 | 96 | | Minus |
| 2L | 10487624..10488353 | 104..833 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:52:00 Download gff for
BO08981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10487624..10488353 | 104..833 | 99 | <- | Minus |
| arm_2L | 10488411..10488504 | 9..103 | 96 | | Minus |
BO08981.complete Sequence
2362 bp (2362 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631340
> BO08981.complete
GAAGTTATCAGTCGACATGAGTGTTCTGGAACAGCTGGGTGCTCTAGATA
TCGGTACAAATGAGCAGGTGGACGAAACGCTGCAGCGGATTGCCGACGAA
GAGGCAAAAGTTAACGAGAAACTGGAGTCGCTGCTGGCCAAACAATGCCA
GATTGAGGCCAAAATGAGTGGCATTGGGCGATCACTCAGCCTGCTTCACA
CGGTGGACAGCGATTCCAACAAGCTGAACGACCAGATCGTAAACACTGCC
CAGTTGGCCGAATCGGTGAGCGCCAAGGTGCGCCGTTTGGATTTGGCCAG
GTGCCGTGCCTCCGAGTGCCAGCAGCGGGTGCACGATCTGATCGACCTGC
ATCTGTGTAGCCAGGGCGTGGTGAAGGCCATCGGCGAGGAGGACTACGAG
AAGAGTGCCACCCACATTGCCCGCTTCCTGGCGATGGATCAGCAATTGCT
GCGGCGCACCGCCGACGACGTTCAGGGCTCCATAACGTCGGTTAGCGATG
CGGTCAAGACGCTGGAGGATGCCACCGAGAAGACCCGCGTGCTGATTGCC
AAGCGCTTCGATGAGGCAGTCAAAGCCGATGATTTGGCCTCTGTGGAAAG
ATTCTTCAAAATCTTTCCACTAGTCGGTTGCCATCGCACCGGAATCGAAA
AGTTCTCGCTCTACATTTGCCAAAAGCTGGCAAACAAGGCGCAGAAGGAA
CTAAGGAACGCCCAGGACATAGCCAAGGCGGAATCGCGCCTGCAATTGGC
CTACGCAGATCGGCTGACTGCTATTTTGGAAAACTTCGCCAGGGTGGTGG
AAGTCAATCAGCCGATAATCGAAGCCTTTTACGGACAAGCTTCATCATCA
CTCATCGACATGGTGTCCATACTGCAGCACGAATGCGATACGGAGGTGAA
GAATCTTCTAATGGAGTTCAACAAGAACCGGCAGATCCAGTACCGCAGCA
AGCAAGTAAATGAATCCACTCAGCGGTCGGCCGGTGGCGGAAATCTCGGG
AGCAACAGCATCCAAGCACTGGGTCATTATAGGAAACCATCTGGCGGCTC
GGTGGACAAGCTAAATCCCAAGGAAATCGATGCCATTATAGCTGAAATAA
CCGTCATGCACGCCAGGGTCGAGTTGTACTTCCGATTTATGCGTCGGCGC
CTACAGGTACATGTGGAGACGTGTGTGCCGGAAAAGGAGCAGTTTGATAT
AATGGAACGCTATGAGAAGATCATGAAGAACTCCGATCTGCGCCGCCAAA
TGCAGGAAATTCTGAGCACCTATTTGCTGCTGGAAAGATATTTCATGGAG
GAGAGCGTACTGAAGGCCATCGGCTTGGACACCTATGAGTCTGGGCAGCA
GTGTTCGTCCATGGTGGACGATGTGTTCTTCATTCTTCGCAAATCCATTC
GCAGGGCTCTGACAACCCAATCGATAAACGGAACCTGTGCTGTGATCAAC
AACGTGGCTGCCTGCCTGGATGGTGATTTTGTGAACGCACTGAAGGCGCC
CTTGAAAAGCGGCTATCCCTCGGGCTACATCGACTTGGCCCAGGCATATA
ATGCTATACAAACATCGCTGCAGCAGGGAAAACTACATTCCAGTGATGCC
GATCGAGGTCGAGCCAATTTCTTGGTTCAGCTGAACAATGCCGACATATC
GACAGAGTATATTGAGACCTTGTGTCAGACGATGGAACAGGAAATTGCTG
GCACATTTCCACAAACGACCCAGGTGGAGCGTCAAATGCTGGACAGTTGC
CTCACGGAACTTAAAGCTGTGCGGGACGCGTTGAAAGCCACCGTTGATTT
TGGAATGCAGCAGCTGCGATCCAGTGTCATAAAGCCACGCCTTAATCCCT
GGATCAATCAGTTCCTGAACTACAGTCACAATTTGAATGAGGAGGAACTT
GCTGCTTACGAAGCTGGGGAGACATTTGTCCAGTTCTTCATAGTGCAATT
GGATGGACTACTTAACTCTTTTAAGAACTCGTTGAGTCCGCGCAACTATG
ATGCACTCGTTAGCATTTTGGCGACCGAAGTGACTATTCAATTGGAACGG
GCTATTAAGAAAATCAGCTTTAATAGACTTGGCGGTTTGGTGCTTGATCA
GGAAGTTCGTGCCTTGGGAAGTTATCTAACAGGAGCTACATCGTGGTCGG
TTCGAGATAAGATGACACGTATATCCCAAATAGCTACGCTCCTCAATCTG
GACAAGATTACGGAGCTATCGGAGTACTGGAATCCGGAGAATAACAAAGA
GATGTCATCTTGGCATCTCACACCTAACGAAGTTCGCACATTTTTAACGT
TAAGAAATGACTTTCGTATAGAAGACATTAAGCGGCTACAACTTGCAAGC
TTTCTAGACCAT
BO08981.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-RA | 2331 | CG7456-PA | 1..2328 | 17..2344 | 11640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-RA | 2666 | CG7456-RA | 126..2453 | 17..2344 | 11640 | 100 | Plus |
| Grip75-RA | 2141 | CG6176-RA | 2035..2076 | 2344..2303 | 210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10487617..10488355 | 840..102 | 3695 | 100 | Minus |
| 2L | 23513712 | 2L | 10486397..10487003 | 1892..1286 | 3035 | 100 | Minus |
| 2L | 23513712 | 2L | 10487243..10487559 | 1157..841 | 1585 | 100 | Minus |
| 2L | 23513712 | 2L | 10485855..10486081 | 2304..2078 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 10486152..10486339 | 2077..1890 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 10487062..10487195 | 1287..1154 | 670 | 100 | Minus |
| 2L | 23513712 | 2L | 10488410..10488497 | 104..17 | 440 | 100 | Minus |
| 2L | 23513712 | 2L | 10485751..10485792 | 2344..2303 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:40:36 has no hits.
BO08981.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:44 Download gff for
BO08981.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 1..2331 | 17..2345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:50 Download gff for
BO08981.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 120..2459 | 9..2350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:22 Download gff for
BO08981.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 126..2453 | 17..2346 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:44 Download gff for
BO08981.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 120..2459 | 9..2350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:08 Download gff for
BO08981.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7456-RA | 126..2453 | 17..2346 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:08 Download gff for
BO08981.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10486152..10486337 | 1892..2077 | 100 | <- | Minus |
| 2L | 10487244..10487559 | 841..1156 | 100 | <- | Minus |
| 2L | 10485749..10485790 | 2305..2346 | 95 | <- | Minus |
| 2L | 10485855..10486081 | 2078..2304 | 100 | <- | Minus |
| 2L | 10486398..10487001 | 1288..1891 | 100 | <- | Minus |
| 2L | 10487062..10487192 | 1157..1287 | 100 | <- | Minus |
| 2L | 10487617..10488353 | 104..840 | 100 | <- | Minus |
| 2L | 10488411..10488497 | 17..103 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:22 Download gff for
BO08981.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10485749..10485790 | 2305..2346 | 95 | <- | Minus |
| arm_2L | 10485855..10486081 | 2078..2304 | 100 | <- | Minus |
| arm_2L | 10486152..10486337 | 1892..2077 | 100 | <- | Minus |
| arm_2L | 10486398..10487001 | 1288..1891 | 100 | <- | Minus |
| arm_2L | 10487062..10487192 | 1157..1287 | 100 | <- | Minus |
| arm_2L | 10487244..10487559 | 841..1156 | 100 | <- | Minus |
| arm_2L | 10487617..10488353 | 104..840 | 100 | <- | Minus |
| arm_2L | 10488411..10488497 | 17..103 | 100 | | Minus |
BO08981.pep Sequence
Translation from 16 to 2362
> BO08981.pep
MSVLEQLGALDIGTNEQVDETLQRIADEEAKVNEKLESLLAKQCQIEAKM
SGIGRSLSLLHTVDSDSNKLNDQIVNTAQLAESVSAKVRRLDLARCRASE
CQQRVHDLIDLHLCSQGVVKAIGEEDYEKSATHIARFLAMDQQLLRRTAD
DVQGSITSVSDAVKTLEDATEKTRVLIAKRFDEAVKADDLASVERFFKIF
PLVGCHRTGIEKFSLYICQKLANKAQKELRNAQDIAKAESRLQLAYADRL
TAILENFARVVEVNQPIIEAFYGQASSSLIDMVSILQHECDTEVKNLLME
FNKNRQIQYRSKQVNESTQRSAGGGNLGSNSIQALGHYRKPSGGSVDKLN
PKEIDAIIAEITVMHARVELYFRFMRRRLQVHVETCVPEKEQFDIMERYE
KIMKNSDLRRQMQEILSTYLLLERYFMEESVLKAIGLDTYESGQQCSSMV
DDVFFILRKSIRRALTTQSINGTCAVINNVAACLDGDFVNALKAPLKSGY
PSGYIDLAQAYNAIQTSLQQGKLHSSDADRGRANFLVQLNNADISTEYIE
TLCQTMEQEIAGTFPQTTQVERQMLDSCLTELKAVRDALKATVDFGMQQL
RSSVIKPRLNPWINQFLNYSHNLNEEELAAYEAGETFVQFFIVQLDGLLN
SFKNSLSPRNYDALVSILATEVTIQLERAIKKISFNRLGGLVLDQEVRAL
GSYLTGATSWSVRDKMTRISQIATLLNLDKITELSEYWNPENNKEMSSWH
LTPNEVRTFLTLRNDFRIEDIKRLQLASFLDH
BO08981.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7456-PA | 776 | CG7456-PA | 1..776 | 1..776 | 3895 | 100 | Plus |
