Clone BO08987 Report

Search the DGRC for BO08987

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptIrp-1A-RA
Protein status:BO08987.pep: validated full length
Sequenced Size:2740

Clone Sequence Records

BO08987.3prime Sequence

926 bp (803 high quality bases) assembled on 2006-01-10

> BO08987.3prime
ATGGTCTAGAAAGCTTGCATCCAGCATTTTGCGTATCATATAGTTCAAAA
TGCCGCCATTCTTGTAGTACGTTATGTCCACCTCGGTGTCGAAACGCAAC
GTGGTCTCAAAGACATTGCCATCAGCATCGACCTGAATCCTCTGGCCCGG
CTTCAGTTCGCCCTCGGGCAGGACAATGTTGTACACCTCCCTGCCACTCA
GTTTCAGGGTATCGGCGCTCTGGCCAGGCAAGAACTGCAGCGGAATGATG
CCCATGCCCACCAGATTTGAGCGGTGAATGCGCTCGTACGATTCAGCAAT
CACCGCCTTGATGCCCAGCAGAAATGGCCCCTTGGCGGCCCAATCACGTG
AGCTGCCACTGCCGTAGTCCTTGCCTACGACCAGAACCAAAGGTGTTCCT
TCGCTCGCATACCGTTCCGCCGCATCGAAGATGTCCATCTCCTCGCCACT
GGGCACGTGCAGTGTGCTGGGTCCCGTCTTGGATGCCAGTTTATTGACCA
GACGGATGTTGGCAAAGGTTCCGCGTGCCATCACCGCATCATTGCCACGT
CTGGATCCATACGAATTAAAGTCGCGCGGCGTTAGACCCCTTTCCGACAA
ATAGCGCGCTGCCGGTGACTTTCGTGCAATGGATCCGGCTGGCGAGATAT
GATCGGTGGTCACTGAATCACCGAGAAGCAGCAGACAGCGAGCCTTCTCG
ATACCTTTAAGTTTGGGCAGCGCACGAGTCATACCCTCGAAGAACGGTGG
TAGTTTGATGTATGTTGATATTTCACTCCATGGATACAACTTGCTATCCG
ACACCTCCCACGTTTGCCAGTCCCTGGATCCCAGTTGAATTTTGCTGTAC
ACCTCCTGGAACATGGCGGGAATGACGTGCTTATGCTCTACCTCCTGAAT
CTCACTGCGCGTTGGCCAGATATCGC

BO08987.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4900-PA 2709 Irp-1A-RA 1799..2706 926..19 4515 99.8 Minus
CG6342-PA 2700 Irp-1B-RA 2338..2480 378..236 315 88.8 Minus
CG6342-PA 2700 Irp-1B-RA 1846..1878 870..838 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2882 CG4900-RA 1862..2769 926..19 4525 99.9 Minus
Irp-1B-RA 2901 CG6342-RA 1849..2747 921..23 1465 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:34:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22721433..22722259 19..845 4120 99.9 Plus
3R 32079331 3R 10408949..10409657 137..845 965 75.7 Plus
3R 32079331 3R 22722323..22722404 845..926 410 100 Plus
3R 32079331 3R 10408772..10408875 23..126 265 83.7 Plus
3R 32079331 3R 10409716..10409792 845..921 205 84.4 Plus
Blast to na_te.dros performed on 2015-01-31 15:35:03 has no hits.

BO08987.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:37 Download gff for BO08987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1799..2709 18..926 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:48 Download gff for BO08987.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1799..2709 18..926 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:15:53 Download gff for BO08987.3prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 1862..2774 11..926 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:24 Download gff for BO08987.3prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 1862..2774 11..926 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:24 Download gff for BO08987.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22721428..22722259 11..845 99 <- Plus
3R 22722324..22722404 846..926 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:15:53 Download gff for BO08987.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18547150..18547981 11..845 99 <- Plus
arm_3R 18548046..18548126 846..926 100   Plus

BO08987.5prime Sequence

887 bp (730 high quality bases) assembled on 2006-01-10

> BO08987.5prime
GAAGTTATCAGTCGACATGTCCGGCTCCGGCGCCAATCCCTTTGCCCAGT
TCCAGGAGTCATTCACCCAGGACGGCAACGTCTACAAGTATTTTGATCTG
CCCTCCATCGACAGCAAATATGAGTCACTGCCCTTTTCCATTCGCGTTCT
GCTGGAATCAGCGGTGCGCAACTGTGACAACTTTCATGTGCTGGAGAAGG
ATGTGCAGAGCATCCTGGGATGGACTCCATCGCTGAAGCAGGAAACCAGC
GATGTGGAAGTCTCCTTCAAGCCAGCTCGTGTTATATTGCAGGACTTTAC
TGGCGTTCCCGCCGTCGTGGATTTTGCTGCCATGCGGGATGCTGTCCGCG
AGCTGGGCGGCAATCCTGAGAAAATCAATCCCATCTGCCCTGCCGACCTG
GTCATCGACCATTCCGTTCAGGTGGATTTCGTTCGCTCCTCGGACGCATT
GACCAAGAACGAGTCACTAGAGTTCCAGCGCAACAAGGAACGATTCACCT
TCCTCAAATGGGGAGCTCGCGCTTTTGACAATATGCTAATTGTGCCACCC
GGCTCTGGCATTGTGCACCAGGTTAACCTGGAGTATCTGGCCCGAGTGGT
TTTCGAAAGCGACAGTTCAGCGGACGGATCTAAGATCCTTTATCCGGATA
GCGTTGTGGGCACTGACTCCCACACTACAATGATCAATGGATTAGGTGTT
CTCGGCTGGGGTGTTGGCGGTATCGAGGCGGAGGCCGTAATGTTGGGCCA
GTCCATTTCCATGCTGTTGCCAGAGGTGATTGGCTACAGGCTGGAGGGCA
AACTGGGCCCTCTGGCCACATCCACCGATCTGGTGCTGACCCATTACCAG
CATTTGCGTCAGCTTGGTGTCGTCGGCAAGTTCGTGG

BO08987.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4900-PA 2709 Irp-1A-RA 1..825 17..841 4125 100 Plus
CG6342-PA 2700 Irp-1B-RA 715..816 740..841 260 90.1 Plus
CG4900-PA 2709 Irp-1A-RA 833..871 849..887 195 100 Plus
CG6342-PA 2700 Irp-1B-RA 346..386 368..408 155 95.1 Plus
CG6342-PA 2700 Irp-1B-RA 139..201 161..223 140 88.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2882 CG4900-RA 64..934 17..887 4310 99.8 Plus
Irp-1B-RA 2901 CG6342-RA 61..916 29..887 1665 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22723457..22724054 887..290 2915 99.2 Minus
3R 32079331 3R 22724117..22724288 293..122 860 100 Minus
3R 32079331 3R 10410914..10411270 887..528 670 79.7 Minus
3R 32079331 3R 10411356..10411569 504..291 470 81.3 Minus
3R 32079331 3R 22724359..22724452 122..29 470 100 Minus
3R 32079331 3R 10411628..10411794 293..127 340 80.2 Minus
3R 32079331 3R 10412620..10412713 122..29 185 79.8 Minus
Blast to na_te.dros performed on 2015-02-10 03:03:49 has no hits.

BO08987.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:38 Download gff for BO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:50 Download gff for BO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4900-PA 1..871 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:54 Download gff for BO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 58..934 12..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:13:04 Download gff for BO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 58..934 12..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:13:04 Download gff for BO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22723457..22724051 293..887 99 <- Minus
3R 22724118..22724287 123..292 100 <- Minus
3R 22724359..22724451 30..122 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:54 Download gff for BO08987.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18549179..18549773 293..887 99 <- Minus
arm_3R 18549840..18550009 123..292 100 <- Minus
arm_3R 18550081..18550173 30..122 100 <- Minus

BO08987.complete Sequence

2740 bp assembled on 2007-11-30

GenBank Submission: FJ631341

> BO08987.complete
GAAGTTATCAGTCGACATGTCCGGCTCCGGCGCCAATCCCTTTGCCCAGT
TCCAGGAGTCATTCACCCAGGACGGCAACGTCTACAAGTATTTTGATCTG
CCCTCCATCGACAGCAAATATGAGTCACTGCCCTTTTCCATTCGCGTTCT
GCTGGAATCAGCGGTGCGCAACTGTGACAACTTTCATGTGCTGGAGAAGG
ATGTGCAGAGCATCCTGGGATGGACTCCATCGCTGAAGCAGGAAACCAGC
GATGTGGAAGTCTCCTTCAAGCCAGCTCGTGTTATATTGCAGGACTTTAC
TGGCGTTCCCGCCGTCGTGGATTTTGCTGCCATGCGGGATGCTGTCCGCG
AGCTGGGCGGCAATCCTGAGAAAATCAATCCCATCTGCCCTGCCGACCTG
GTCATCGACCATTCCGTTCAGGTGGATTTCGTTCGCTCCTCGGACGCATT
GACCAAGAACGAGTCACTAGAGTTCCAGCGCAACAAGGAACGATTCACCT
TCCTCAAATGGGGAGCTCGCGCTTTTGACAATATGCTAATTGTGCCACCC
GGCTCTGGCATTGTGCACCAGGTTAACCTGGAGTATCTGGCCCGAGTGGT
TTTCGAAAGCGACAGTTCAGCGGACGGATCTAAGATCCTTTATCCGGATA
GCGTTGTGGGCACTGACTCCCACACTACAATGATCAATGGATTAGGTGTT
CTCGGCTGGGGTGTTGGCGGTATCGAGGCGGAGGCCGTAATGTTGGGCCA
GTCCATTTCCATGCTGTTGCCAGAGGTGATTGGCTACAGGCTGGAGGGCA
AACTGGGCCCTCTGGCCACATCCACCGATCTGGTGCTGACCATTACCAAG
CATTTGCGTCAGCTTGGTGTCGTCGGCAAGTTCGTGGAGTTTTACGGCCC
CGGAGTGGCAGAGCTCAGCATCGCGGATCGCGCCACCATCAGCAACATGT
GTCCGGAATATGGAGCCACTGTGGGTTACTTCCCAATCGATGAAAACACG
CTGAGTTACATGCGCCAAACCAATCGCTCCGAGAAGAAAATCGATATTAT
CCGGAAGTATTTGAAGGCCACTCGACAACTTCGTGACTATTCCCTTGTGG
ATCAGGATCCCCAATACACGGAGTCTGTAACTTTGGACTTATCCACCGTG
GTGACCTCGGTTTCGGGGCCCAAGCGACCGCACGATCGCGTTTCAGTTTC
CAGCATGTGCGAAGACTTCAAGTCGTGCCTCATAAGTCCTGTCGGCTTCA
AGGGATTCGCCATACCACCGAGTGCATTGGCTGCAAGTGGTGAATTCCAA
TGGGACGATGGGAAGAGCTATAAGATAGGTCATGGATCTGTTGTGATTGC
CGCCATCACCTCGTGCACGAACACTTCGAATCCCTCGGTGATGTTGGGCG
CTGGTCTGCTGGCCAAGAATGCCGTGCAGAAGGGCTTGAGTATTTTGCCG
TATATCAAGACCTCATTGTCACCAGGATCTGGCGTGGTTACCTACTATCT
GAGGGAATCCGGTGTGATTCCCTATCTGGAGCAGCTGGGCTTCGACATTG
TGGGCTATGGCTGTATGACCTGCATTGGCAACTCGGGCCCGCTCGATGAG
AACGTAGTGAACACCATCGAGAAGAACGGACTGGTTTGCTGTGGCGTCCT
GTCGGGCAATCGCAATTTCGAGGGTCGCATCCATCCCAATACTAGGGCCA
ATTATCTGGCCAGTCCGCTGCTGGTGATTGCCTACGCGATTGCCGGCCGT
GTGGATATTGATTTCGAGATCGAACCGCTGGGCGTGGATTCCAACGGCAA
GGAGGTGTTCCTGCGCGATATCTGGCCAACGCGCAGTGAGATTCAGGAGG
TAGAGCATAAGCACGTCATTCCCGCCATGTTCCAGGAGGTGTACAGCAAA
ATTCAACTGGGATCCAGGGACTGGCAAACGTTGGAGGTGTCGGATAGCAA
GTTGTATCCATGGAGTGAAATATCAACATACATCAAACTACCACCGTTCT
TCGAGGGTATGACTCGTGCGCTGCCCAAACTTAAAGGTATCGAGAAGGCT
CGCTGTCTGCTGCTTCTCGGTGATTCAGTGACCACCGATCATATCTCGCC
AGCCGGATCCATTGCACGAAAGTCACCGGCAGCGCGCTATTTGTCGGAAA
GGGGTCTAACGCCGCGCGACTTTAATTCGTATGGATCCAGACGTGGCAAT
GATGCGGTGATGGCACGCGGAACCTTTGCCAACATCCGTCTGGTCAATAA
ACTGGCATCCAAGACGGGACCCAGCACACTGCACGTGCCCAGTGGCGAGG
AGATGGACATCTTCGATGCGGCGGAACGGTATGCGAGCGAAGGAACACCT
TTGGTTCTGGTCGTAGGCAAGGACTACGGCAGTGGCAGCTCACGTGATTG
GGCCGCCAAGGGGCCATTTCTGCTGGGCATCAAGGCGGTGATTGCTGAAT
CGTACGAGCGCATTCACCGCTCAAATCTGGTGGGCATGGGCATCATTCCG
CTGCAGTTCTTGCCTGGCCAGAGCGCCGATACCCTGAAACTGAGTGGCAG
GGAGGTGTACAACATTGTCCTGCCCGAGGGCGAACTGAAGCCGGGCCAGA
GGATTCAGGTCGATGCTGATGGCAATGTCTTTGAGACCACGTTGCGTTTC
GACACCGAGGTGGACATAACGTACTACAAGAATGGCGGCATTTTGAACTA
TATGATACGCAAAATGCTGGATGCAAGCTTTCTAGACCAT

BO08987.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2709 CG4900-PA 1..2706 17..2722 13530 100 Plus
Irp-1B-RA 2700 CG6342-PA 7..2693 29..2718 4760 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-RA 2882 CG4900-RA 64..2769 17..2722 13530 100 Plus
Irp-1B-RA 2901 CG6342-RA 61..2747 29..2718 4760 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22721433..22722259 2722..1896 4135 100 Minus
3R 32079331 3R 22722323..22723097 1896..1122 3875 100 Minus
3R 32079331 3R 22723322..22724054 1022..290 3665 100 Minus
3R 32079331 3R 10409716..10410324 1896..1288 1410 82.1 Minus
3R 32079331 3R 10410789..10411270 1012..528 1070 81.9 Minus
3R 32079331 3R 10408949..10409657 2604..1896 980 75.9 Minus
3R 32079331 3R 22724117..22724288 293..122 860 100 Minus
3R 32079331 3R 22723159..22723259 1123..1023 505 100 Minus
3R 32079331 3R 10411356..10411569 504..291 470 81.3 Minus
3R 32079331 3R 22724359..22724452 122..29 470 100 Minus
3R 32079331 3R 10411628..10411794 293..127 340 80.2 Minus
3R 32079331 3R 10408772..10408875 2718..2615 265 83.7 Minus
3R 32079331 3R 10410450..10410532 1230..1148 190 81.9 Minus
3R 32079331 3R 10412620..10412713 122..29 185 79.8 Minus
Blast to na_te.dros performed on 2014-11-27 10:56:24 has no hits.

BO08987.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:36 Download gff for BO08987.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 1..2709 17..2723 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:33:39 Download gff for BO08987.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 80..2785 17..2724 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:07 Download gff for BO08987.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 64..2769 17..2724 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:55:36 Download gff for BO08987.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 74..2790 12..2730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:37 Download gff for BO08987.complete
Subject Subject Range Query Range Percent Splice Strand
Irp-1A-RA 64..2769 17..2724 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:37 Download gff for BO08987.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22723159..22723259 1023..1123 100 <- Minus
3R 22721431..22722259 1896..2724 99 <- Minus
3R 22722324..22723095 1124..1895 100 <- Minus
3R 22723322..22724051 293..1022 100 <- Minus
3R 22724118..22724287 123..292 100 <- Minus
3R 22724359..22724451 30..122 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:07 Download gff for BO08987.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18547153..18547981 1896..2724 99 <- Minus
arm_3R 18548046..18548817 1124..1895 100 <- Minus
arm_3R 18548881..18548981 1023..1123 100 <- Minus
arm_3R 18549044..18549773 293..1022 100 <- Minus
arm_3R 18549840..18550009 123..292 100 <- Minus
arm_3R 18550081..18550173 30..122 100 <- Minus

BO08987.pep Sequence

Translation from 16 to 2740

> BO08987.pep
MSGSGANPFAQFQESFTQDGNVYKYFDLPSIDSKYESLPFSIRVLLESAV
RNCDNFHVLEKDVQSILGWTPSLKQETSDVEVSFKPARVILQDFTGVPAV
VDFAAMRDAVRELGGNPEKINPICPADLVIDHSVQVDFVRSSDALTKNES
LEFQRNKERFTFLKWGARAFDNMLIVPPGSGIVHQVNLEYLARVVFESDS
SADGSKILYPDSVVGTDSHTTMINGLGVLGWGVGGIEAEAVMLGQSISML
LPEVIGYRLEGKLGPLATSTDLVLTITKHLRQLGVVGKFVEFYGPGVAEL
SIADRATISNMCPEYGATVGYFPIDENTLSYMRQTNRSEKKIDIIRKYLK
ATRQLRDYSLVDQDPQYTESVTLDLSTVVTSVSGPKRPHDRVSVSSMCED
FKSCLISPVGFKGFAIPPSALAASGEFQWDDGKSYKIGHGSVVIAAITSC
TNTSNPSVMLGAGLLAKNAVQKGLSILPYIKTSLSPGSGVVTYYLRESGV
IPYLEQLGFDIVGYGCMTCIGNSGPLDENVVNTIEKNGLVCCGVLSGNRN
FEGRIHPNTRANYLASPLLVIAYAIAGRVDIDFEIEPLGVDSNGKEVFLR
DIWPTRSEIQEVEHKHVIPAMFQEVYSKIQLGSRDWQTLEVSDSKLYPWS
EISTYIKLPPFFEGMTRALPKLKGIEKARCLLLLGDSVTTDHISPAGSIA
RKSPAARYLSERGLTPRDFNSYGSRRGNDAVMARGTFANIRLVNKLASKT
GPSTLHVPSGEEMDIFDAAERYASEGTPLVLVVGKDYGSGSSRDWAAKGP
FLLGIKAVIAESYERIHRSNLVGMGIIPLQFLPGQSADTLKLSGREVYNI
VLPEGELKPGQRIQVDADGNVFETTLRFDTEVDITYYKNGGILNYMIRKM
LDASFLDH

BO08987.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Irp-1A-PA 902 CG4900-PA 1..902 1..902 4651 100 Plus
Irp-1B-PA 899 CG6342-PA 2..898 4..901 4122 87.6 Plus
CG4706-PA 783 CG4706-PA 65..772 60..896 512 27.6 Plus
Acon-PF 787 CG9244-PF 99..782 85..896 475 25.9 Plus
Acon-PE 787 CG9244-PE 99..782 85..896 475 25.9 Plus