Clone Sequence Records
BO08991.3prime Sequence
903 bp (828 high quality bases) assembled on 2006-01-10
> BO08991.3prime
ATGGTCTAGAAAGCTTGCGTACTTGTAACGATAAATAGCGACGCCAGCCA
CTCCAATTAATATCGTACCCATTAGATAGCCAAGCAGCTTCAGCTTGGAA
TTGTCGACAAGCGGCTGCTTTTGCCTGGTGGCAGTATTCTGCTCCATTTT
TTTGGCCTGGCCCAGCATCTTTTGATACATCTCCTTTTCGTTGTGCTCCT
CACGACGAGCCTTGATGAAAAGTCTGGCCAAATCCGATTGAACGGCTCGA
TTTTCGGGTTCGAGAGTAGCCACTTTTTGCAGTAGCTTAATAGCACCCTG
GGTGTCCGCTTTGCCCTCCAATATTCTTCCTTTGCGATACAAGGCTTTGG
AGTTATTTGGCTGGCACCGCAGCACATGCTCCACGGACTGCAGAGCTGCG
TCATAAGCGGCAATCTTGATTTGAGTCATTGCCAAGTTATTGTAAACGAT
CAACCGATCCTCTAGCAGGGTCTGCGTGTCACTGTTCGAGAGCTCCAAGT
CTTCCTTGTCGAACTCGGAGTCCGGATCCCCATCACGATTGTCCAGAAAG
TCGAGGGCACGTCTGTACAGGTGAATGGCGGTTGTGAACTCCGAGCGTTT
GTAAAAGAAATTGGCACGTTCTTTCTTGCGCGTACCATATTTGCGCAGTA
TTTCAAAGCTCTTAAGGTCCGCAAATTCTTCGTATTTGATATCCAGAAGC
TCTATTTCGTAGGTAAGGTGCGCATCGGGTGGTACCAGGTACTCGGATTC
ACCCTCTTTTTTCAGTCCTAGGGAGCCGTAGCCGAAGCGGGAATCCACGC
TGACTTGGGACACTTCGCCGACCTGCAGCATGGGCAACACCATATCTAAT
CCTTGGATACCTCGTAGTCTCCACGTGACACTGGAAAGTCACTCGTTCTC
GAC
BO08991.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-PA | 1194 | CG5482-RA | 351..1191 | 859..19 | 4205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-RD | 1780 | CG5482-RD | 606..1493 | 903..19 | 4335 | 99.4 | Minus |
| CG5482-RC | 1958 | CG5482-RC | 463..1350 | 903..19 | 4335 | 99.4 | Minus |
| CG5482-RB | 1642 | CG5482-RB | 468..1355 | 903..19 | 4335 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18630629..18630939 | 325..635 | 1555 | 100 | Plus |
| 2R | 25286936 | 2R | 18630334..18630568 | 90..324 | 1160 | 99.6 | Plus |
| 2R | 25286936 | 2R | 18631133..18631321 | 718..903 | 765 | 97.4 | Plus |
| 2R | 25286936 | 2R | 18630996..18631078 | 635..717 | 415 | 100 | Plus |
| 2R | 25286936 | 2R | 18630202..18630278 | 19..95 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:35:16 has no hits.
BO08991.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:41 Download gff for
BO08991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-PA | 304..1194 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:55 Download gff for
BO08991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-PA | 304..1194 | 15..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:15:54 Download gff for
BO08991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 463..1354 | 14..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:36:26 Download gff for
BO08991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RB | 468..1359 | 14..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:36:26 Download gff for
BO08991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18630198..18630276 | 14..93 | 97 | <- | Plus |
| 2R | 18630338..18630568 | 94..324 | 100 | <- | Plus |
| 2R | 18630629..18630938 | 325..634 | 100 | <- | Plus |
| 2R | 18630996..18631078 | 635..717 | 100 | <- | Plus |
| 2R | 18631133..18631321 | 718..903 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:15:54 Download gff for
BO08991.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14518501..14518583 | 635..717 | 100 | <- | Plus |
| arm_2R | 14518638..14518826 | 718..903 | 97 | | Plus |
| arm_2R | 14517703..14517781 | 14..93 | 97 | <- | Plus |
| arm_2R | 14517843..14518073 | 94..324 | 100 | <- | Plus |
| arm_2R | 14518134..14518443 | 325..634 | 100 | <- | Plus |
BO08991.5prime Sequence
891 bp (840 high quality bases) assembled on 2006-01-10
> BO08991.5prime
GAAGTTATCAGTCGACATGGATACGGAGAAGTCTAGCAGCAGCTCCTTCG
AGGACCTGACCAACGCCGAGGACACCAAAGACATTCGCAAGGTGGCAGCG
GAGGAGGCAGCCTCCGGAGATGGCGCACCCCCGGCATCCGTTTCTGGAGA
CGGACAGAAGGCGGAGGAGGAGGATGCAGAGGAGGAATGTGATATACTGG
GTAACAAGCAGCTGATTAAGCGCACCATCAAAAAGGCACCGCAAGACTCG
TTTAGGCGTCCGATTCGCGGCGAATTGGTCACCGTGAACTTCACTGGAAA
ACTGGACAACGGCACGGTGGTCGAGAACGAGTTGAACTTCCAGTGTCACG
TGGGAGACTACGAGGTTATCCAAGGATTAGATATGGTGTTGCCCATGCTG
CAGGTCGGCGAAGTGTCCCAAGTCAGCGTGGATTCCCGCTTCGGCTACGG
CTCCCTAGGACTGAAAAAAGAGGGTGAATCCGAGTACCTGGTACCACCCG
ATGCGCACCTTACCTACGAAATAGAGCTTCTGGATATCAAATACGAAGAA
TTTGCGGACCTTAAGAGCTTTGAAATACTGCGCAAATATGGTACGCGCAA
GAAAGAACGTGCCAATTTCTTTTACAAACGCTCGGAGTTCACAACCGCCA
TTCACCTGTACAGACGTGCCCTCGACTTTCTGGACAATCGTGATGGGGAT
CCGGACTCCGAGTTCGACAAGGAAGACTTGGAGCTCTCGAACAGTGACAC
GCAGACCCTGCTAGAGGATCGGTTGATCGTTTACAATAACTTGGCAATGA
CTCAAATCAAGATTGCCGCTTATGACGCAGCTCTGCAGTCCGTGGAGCAT
GTGCTGCGGTGCCAGCCAAATAACTCAAAAGCCTTGTATCG
BO08991.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-PA | 1194 | CG5482-RA | 1..875 | 17..891 | 4350 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-RD | 1780 | CG5482-RD | 303..1177 | 17..891 | 4360 | 99.9 | Plus |
| CG5482-RC | 1958 | CG5482-RC | 160..1034 | 17..891 | 4360 | 99.9 | Plus |
| CG5482-RB | 1642 | CG5482-RB | 165..1039 | 17..891 | 4360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18631133..18631624 | 508..17 | 2460 | 100 | Minus |
| 2R | 25286936 | 2R | 18630639..18630939 | 891..591 | 1490 | 99.7 | Minus |
| 2R | 25286936 | 2R | 18630996..18631078 | 591..509 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:50:25 has no hits.
BO08991.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:42 Download gff for
BO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:57:56 Download gff for
BO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-PA | 1..875 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:51:58 Download gff for
BO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 154..1034 | 11..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:06 Download gff for
BO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RB | 159..1039 | 11..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:06 Download gff for
BO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18630639..18630938 | 592..891 | 99 | <- | Minus |
| 2R | 18630996..18631078 | 509..591 | 100 | <- | Minus |
| 2R | 18631133..18631630 | 11..508 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:51:58 Download gff for
BO08991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14518144..14518443 | 592..891 | 99 | <- | Minus |
| arm_2R | 14518501..14518583 | 509..591 | 100 | <- | Minus |
| arm_2R | 14518638..14519135 | 11..508 | 99 | | Minus |
BO08991.complete Sequence
1225 bp (1225 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631342
> BO08991.complete
GAAGTTATCAGTCGACATGGATACGGAGAAGTCTAGCAGCAGCTCCTTCG
AGGACCTGACCAACGCCGAGGACACCAAAGACATTCGCAAGGTGGCAGCG
GAGGAGGCAGCCTCCGGAGATGGCGCACCCCCGGCATCCGTTTCTGGAGA
CGGACAGAAGGCGGAGGAGGAGGATGCAGAGGAGGAATGTGATATACTGG
GTAACAAGCAGCTGATTAAGCGCACCATCAAAAAGGCACCGCAAGACTCG
TTTAGGCGTCCGATTCGCGGCGAATTGGTCACCGTGAACTTCACTGGAAA
ACTGGACAACGGCACGGTGGTCGAGAACGAGTTGAACTTCCAGTGTCACG
TGGGAGACTACGAGGTTATCCAAGGATTAGATATGGTGTTGCCCATGCTG
CAGGTCGGCGAAGTGTCCCAAGTCAGCGTGGATTCCCGCTTCGGCTACGG
CTCCCTAGGACTGAAAAAAGAGGGTGAATCCGAGTACCTGGTACCACCCG
ATGCGCACCTTACCTACGAAATAGAGCTTCTGGATATCAAATACGAAGAA
TTTGCGGACCTTAAGAGCTTTGAAATACTGCGCAAATATGGTACGCGCAA
GAAAGAACGTGCCAATTTCTTTTACAAACGCTCGGAGTTCACAACCGCCA
TTCACCTGTACAGACGTGCCCTCGACTTTCTGGACAATCGTGATGGGGAT
CCGGACTCCGAGTTCGACAAGGAAGACTTGGAGCTCTCGAACAGTGACAC
GCAGACCCTGCTAGAGGATCGGTTGATCGTTTACAATAACTTGGCAATGA
CTCAAATCAAGATTGCCGCTTATGACGCAGCTCTGCAGTCCGTGGAGCAT
GTGCTGCGGTGCCAGCCAAATAACTCCAAAGCCTTGTATCGCAAAGGAAG
AATATTGGAGGGCAAAGCGGACACCCAGGGTGCTATTAAGCTACTGCAAA
AAGTGGCTACTCTCGAACCCGAAAATCGAGCCGTTCAATCGGATTTGGCC
AGACTTTTCATCAAGGCTCGTCGTGAGGAGCACAACGAAAAGGAGATGTA
TCAAAAGATGCTGGGCCAGGCCAAAAAAATGGAGCAGAATACTGCCACCA
GGCAAAAGCAGCCGCTTGTCGACAATTCCAAGCTGAAGCTGCTTGGCTAT
CTAATGGGTACGATATTAATTGGAGTGGCTGGCGTCGCTATTTATCGTTA
CAAGTACGCAAGCTTTCTAGACCAT
BO08991.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-RD | 1194 | CG5482-PD | 1..1191 | 17..1207 | 5955 | 100 | Plus |
| CG5482-RC | 1194 | CG5482-PC | 1..1191 | 17..1207 | 5955 | 100 | Plus |
| CG5482-RB | 1194 | CG5482-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-RD | 1780 | CG5482-RD | 303..1493 | 17..1207 | 5955 | 100 | Plus |
| CG5482-RC | 1958 | CG5482-RC | 160..1350 | 17..1207 | 5955 | 100 | Plus |
| CG5482-RB | 1642 | CG5482-RB | 165..1355 | 17..1207 | 5955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18631133..18631624 | 508..17 | 2460 | 100 | Minus |
| 2R | 25286936 | 2R | 18630629..18630939 | 901..591 | 1555 | 100 | Minus |
| 2R | 25286936 | 2R | 18630334..18630568 | 1136..902 | 1160 | 99.6 | Minus |
| 2R | 25286936 | 2R | 18630996..18631078 | 591..509 | 415 | 100 | Minus |
| 2R | 25286936 | 2R | 18630202..18630278 | 1207..1131 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:04:11 has no hits.
BO08991.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:06 Download gff for
BO08991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 1..1194 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:09 Download gff for
BO08991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 150..1350 | 11..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:48 Download gff for
BO08991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 160..1350 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:06 Download gff for
BO08991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RA | 150..1350 | 11..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:17 Download gff for
BO08991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5482-RB | 165..1355 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:17 Download gff for
BO08991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18630200..18630276 | 1133..1209 | 97 | <- | Minus |
| 2R | 18630338..18630568 | 902..1132 | 100 | <- | Minus |
| 2R | 18630629..18630938 | 592..901 | 100 | <- | Minus |
| 2R | 18630996..18631078 | 509..591 | 100 | <- | Minus |
| 2R | 18631133..18631624 | 17..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:48 Download gff for
BO08991.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14518501..14518583 | 509..591 | 100 | <- | Minus |
| arm_2R | 14518134..14518443 | 592..901 | 100 | <- | Minus |
| arm_2R | 14517705..14517781 | 1133..1209 | 97 | <- | Minus |
| arm_2R | 14517843..14518073 | 902..1132 | 100 | <- | Minus |
| arm_2R | 14518638..14519129 | 17..508 | 100 | | Minus |
BO08991.pep Sequence
Translation from 16 to 1225
> BO08991.pep
MDTEKSSSSSFEDLTNAEDTKDIRKVAAEEAASGDGAPPASVSGDGQKAE
EEDAEEECDILGNKQLIKRTIKKAPQDSFRRPIRGELVTVNFTGKLDNGT
VVENELNFQCHVGDYEVIQGLDMVLPMLQVGEVSQVSVDSRFGYGSLGLK
KEGESEYLVPPDAHLTYEIELLDIKYEEFADLKSFEILRKYGTRKKERAN
FFYKRSEFTTAIHLYRRALDFLDNRDGDPDSEFDKEDLELSNSDTQTLLE
DRLIVYNNLAMTQIKIAAYDAALQSVEHVLRCQPNNSKALYRKGRILEGK
ADTQGAIKLLQKVATLEPENRAVQSDLARLFIKARREEHNEKEMYQKMLG
QAKKMEQNTATRQKQPLVDNSKLKLLGYLMGTILIGVAGVAIYRYKYASF
LDH
BO08991.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5482-PD | 397 | CG5482-PD | 1..397 | 1..397 | 2013 | 100 | Plus |
| CG5482-PC | 397 | CG5482-PC | 1..397 | 1..397 | 2013 | 100 | Plus |
| CG5482-PB | 397 | CG5482-PB | 1..397 | 1..397 | 2013 | 100 | Plus |
| CG5482-PA | 397 | CG5482-PA | 1..397 | 1..397 | 2013 | 100 | Plus |
| FKBP59-PB | 439 | CG4535-PB | 132..403 | 67..359 | 239 | 25.1 | Plus |
