Clone Sequence Records
BO08995.3prime Sequence
845 bp (838 high quality bases) assembled on 2006-01-10
> BO08995.3prime
ATGGTCTAGAAAGCTTGCCTGGGCACTATGGTTGTGATGTGGATGCTCTG
CTAGGTAGATGACGTAGACCAAGGGTATGACGACACACAAGGCGAGTATG
AAGATCAGCAGACATATCCAAGACAAGTCGCAGTCCGATCCGGACCAGTC
GATGGCACTCAAAGAGGGTCCAGGGATGGGACGCACTAGCGGAGCGTGCC
TGTCCACCATGTGGTTAAGCAGAGCGGCATTTTCCTCGTAGGGTTGCTCC
ATATTGGCTTCGTCATTCGGCGCACCCTGGGCTCCCTCGTAGAATTGTCC
AGCAGCTCTGCTCGTCGATGGTTTCTCGTGATCCACGGCGCCTGAAGCAT
TTACCGCCGCCACCAGGAGTCGCTCATCCAGCATTTGCCGCGCATCCTCG
AGGGGATTGCGTTCGGGAGCTGGTTCCCGCTCAATATTGTGTCTAGGACT
GTTGTTCCCGCTGCGGTGGACCGCAGGAAGGGCTTCGAGGCCCCCGTTGC
CCAGCAGGACGTTGTGCACTGTAACCGGAATGCGAATAACCCGATGTGCG
TGGATTTCATTTTCGCGGTCGATCTTGTTCAGGCGCTTGATGTCCGCCAC
AGAGGAGTGAAAGCGCAGGGCCAGCGCCTGGAGTGTGTCTCCCTCTTGGA
CCTTTACCTCCAGAGTGTTCTCGTAGCGGCCGAGTCGGGCGTGGCCATTG
GGCCTCCTGGCCAGAGGGAGCAGATCTTCGAACTCGTCGTCATCGTAGGC
GGGACGGGCAAAGATGTCTTCCACGTCGTCGGGGCCGATTTCTTCCTGAT
TGTGTTGTTGTTGGCGCGCATTGCGACGCATGTCGACTGATAACT
BO08995.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-PA | 816 | CG17985-RA | 1..813 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 1479 | CG17985-RA | 177..989 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7654478..7655037 | 258..817 | 2800 | 100 | Plus |
| 2R | 25286936 | 2R | 7652115..7652355 | 19..259 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:46:05 has no hits.
BO08995.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:46 Download gff for
BO08995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:03 Download gff for
BO08995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:37:16 Download gff for
BO08995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 11..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:49:46 Download gff for
BO08995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 11..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:49:46 Download gff for
BO08995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652110..7652353 | 11..257 | 98 | <- | Plus |
| 2R | 7654478..7655037 | 258..817 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:37:16 Download gff for
BO08995.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3539615..3539858 | 11..257 | 98 | <- | Plus |
| arm_2R | 3541983..3542542 | 258..817 | 100 | <- | Plus |
BO08995.5prime Sequence
845 bp (795 high quality bases) assembled on 2006-01-10
> BO08995.5prime
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGGCAAGCTTTCTAGACC
BO08995.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-PA | 816 | CG17985-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 1479 | CG17985-RA | 177..989 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7654478..7655037 | 590..31 | 2800 | 100 | Minus |
| 2R | 25286936 | 2R | 7652115..7652355 | 829..589 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:39:24 has no hits.
BO08995.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:47 Download gff for
BO08995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:04 Download gff for
BO08995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-PA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:26:00 Download gff for
BO08995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:24:31 Download gff for
BO08995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..994 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 15:24:31 Download gff for
BO08995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652110..7652353 | 591..837 | 98 | <- | Minus |
| 2R | 7654478..7655037 | 31..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:26:00 Download gff for
BO08995.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3539615..3539858 | 591..837 | 98 | <- | Minus |
| arm_2R | 3541983..3542542 | 31..590 | 100 | <- | Minus |
BO08995.complete Sequence
847 bp assembled on 2007-10-17
GenBank Submission: FJ631343
> BO08995.complete
GAAGTTATCAGTCGACATGCGTCGCAATGCGCGCCAACAACAACACAATC
AGGAAGAAATCGGCCCCGACGACGTGGAAGACATCTTTGCCCGTCCCGCC
TACGATGACGACGAGTTCGAAGATCTGCTCCCTCTGGCCAGGAGGCCCAA
TGGCCACGCCCGACTCGGCCGCTACGAGAACACTCTGGAGGTAAAGGTCC
AAGAGGGAGACACACTCCAGGCGCTGGCCCTGCGCTTTCACTCCTCTGTG
GCGGACATCAAGCGCCTGAACAAGATCGACCGCGAAAATGAAATCCACGC
ACATCGGGTTATTCGCATTCCGGTTACAGTGCACAACGTCCTGCTGGGCA
ACGGGGGCCTCGAAGCCCTTCCTGCGGTCCACCGCAGCGGGAACAACAGT
CCTAGACACAATATTGAGCGGGAACCAGCTCCCGAACGCAATCCCCTCGA
GGATGCGCGGCAAATGCTGGATGAGCGACTCCTGGTGGCGGCGGTAAATG
CTTCAGGCGCCGTGGATCACGAGAAACCATCGACGAGCAGAGCTGCTGGA
CAATTCTACGAGGGAGCCCAGGGTGCGCCGAATGACGAAGCCAATATGGA
GCAACCCTACGAGGAAAATGCCGCTCTGCTTAACCACATGGTGGACAGGC
ACGCTCCGCTAGTGCGTCCCATCCCTGGACCCTCTTTGAGTGCCATCGAC
TGGTCCGGATCGGACTGCGACTTGTCTTGGATATGTCTGCTGATCTTCAT
ACTCGCCTTGTGTGTCGTCATACCCTTGGTCTACGTCATCTACCTAGCAG
AGCATCCACATCACAACCATAGTGCCCAGGCAAGCTTTCTAGACCAT
BO08995.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 816 | CG17985-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-RA | 1479 | CG17985-RA | 177..989 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7654478..7655037 | 590..31 | 2800 | 100 | Minus |
| 2R | 25286936 | 2R | 7652115..7652355 | 829..589 | 1205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:39 has no hits.
BO08995.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:55:38 Download gff for
BO08995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 1..816 | 17..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:05:57 Download gff for
BO08995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 186..1003 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:08 Download gff for
BO08995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..989 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:43 Download gff for
BO08995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 186..998 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:54 Download gff for
BO08995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17985-RA | 177..989 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:54 Download gff for
BO08995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7652113..7652353 | 591..831 | 99 | <- | Minus |
| 2R | 7654478..7655037 | 31..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:08 Download gff for
BO08995.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3539618..3539858 | 591..831 | 99 | <- | Minus |
| arm_2R | 3541983..3542542 | 31..590 | 100 | <- | Minus |
BO08995.pep Sequence
Translation from 16 to 847
> BO08995.pep
MRRNARQQQHNQEEIGPDDVEDIFARPAYDDDEFEDLLPLARRPNGHARL
GRYENTLEVKVQEGDTLQALALRFHSSVADIKRLNKIDRENEIHAHRVIR
IPVTVHNVLLGNGGLEALPAVHRSGNNSPRHNIEREPAPERNPLEDARQM
LDERLLVAAVNASGAVDHEKPSTSRAAGQFYEGAQGAPNDEANMEQPYEE
NAALLNHMVDRHAPLVRPIPGPSLSAIDWSGSDCDLSWICLLIFILALCV
VIPLVYVIYLAEHPHHNHSAQASFLDH
BO08995.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17985-PA | 271 | CG17985-PA | 1..271 | 1..271 | 1426 | 100 | Plus |
