Clone Sequence Records
BO08996.3prime Sequence
893 bp (773 high quality bases) assembled on 2006-01-10
> BO08996.3prime
ATGGTCTAGAAAGCTTGCCTCGTTGACAGAACTGGAGTTCAGCAGAGCCG
TGTCCTCGGGAATGGGCTTCCGCTTGTAGGAGGGCTCAGTGGCTAGGTAG
ACAACCAGCGCCCCGAAGACCACGTACATTACTCCAATCACATTGGCCAA
CACACCAGCCGGTGGAAGAGTGGAGTAAGCCGGAGTTTTGATGGCGAAGA
TGGCCTTCTCGGTTATGCCCATCAGGGCACTAGCAATAGCCAGAACGAAT
CCAAAGAGTCCGAAGTAGATGTGCAGCGGCATCATGGCGATCCTGTAGTT
CTCCCTCAACCCCGGCGCCAAAAAGGCCACAAATCCGGCCACATACTGCA
GCGAGAAGACGATCACCGCGGAGAGCCCCAGCCAAGAGTGCAGGGAGTAC
ATGTTGGGAATGGGCGGATTGGCCAAGTTGTGGGAATCGAAGACCGTCTT
CAGGGCAATCACCGTCAGAATGAATGCACCCATGTGGATGCCGGCGTGGG
TAAGCTTCAGAGTCTTCTTGCGCGTGGTGCGGAAACCACGATAGATCAGA
ATGGAGTTGCCATACAGGTAAATGAAGCCAATGGTCATGAACAGCGGATG
CCAGTTGAACTCCACGCCGGGATTTGAGGTGCCGGCCAGACCGCCGAAGT
GCTGGCCAATCCAGGTGGCCACCAGGACGATCATGGTCAGGCCGCACAGC
TGGGTGAGCACATAGAGCACCTTAAAGTTGATCAGCGCTGGATCCATGTT
GGCCTTGCCGCTGCCTGTTGGTGGTGAAGTTGCCGCCGCCGTTGGAGTGG
CCCACTCAATGCCAGCGATGGTTGTTGCAGGGTGCACTTGTTCTGCTGTC
GCAGGTGTTGCAGTTGTTGCTGGTGTCGCTGCCGCTGGCTTTT
BO08996.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PB | 1023 | CG1275-RB | 146..1020 | 893..19 | 4325 | 99.7 | Minus |
CG1275-PA | 1023 | CG1275-RA | 146..1020 | 893..19 | 4325 | 99.7 | Minus |
CG1275-PC | 765 | CG1275-RC | 16..762 | 765..19 | 3735 | 100 | Minus |
CG1275-PD | 732 | CG1275-RD | 1..729 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1574 | CG1275-RA | 344..1218 | 893..19 | 4345 | 99.8 | Minus |
CG1275-RB | 1698 | CG1275-RB | 468..1342 | 893..19 | 4345 | 99.8 | Minus |
CG1275-RC | 1300 | CG1275-RC | 207..953 | 765..19 | 3735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 191..554 | 1820 | 100 | Plus |
3L | 28110227 | 3L | 2253777..2253989 | 555..767 | 1065 | 100 | Plus |
3L | 28110227 | 3L | 2253100..2253271 | 19..190 | 860 | 100 | Plus |
3L | 28110227 | 3L | 2255538..2255667 | 764..893 | 620 | 98.5 | Plus |
Blast to na_te.dros performed 2015-01-31 15:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..3011 | 887..826 | 123 | 68.3 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7940..8023 | 890..816 | 120 | 66.7 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 9384..9467 | 890..816 | 120 | 66.7 | Minus |
BO08996.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:48 Download gff for
BO08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PB | 146..1023 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:06 Download gff for
BO08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PA | 146..1023 | 15..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:14:25 Download gff for
BO08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 468..1346 | 14..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:35:19 Download gff for
BO08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 468..1346 | 14..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:35:19 Download gff for
BO08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253096..2253271 | 14..190 | 98 | <- | Plus |
3L | 2253329..2253692 | 191..554 | 100 | <- | Plus |
3L | 2253777..2253986 | 555..764 | 100 | <- | Plus |
3L | 2255539..2255667 | 765..893 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:14:25 Download gff for
BO08996.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253096..2253271 | 14..190 | 98 | <- | Plus |
arm_3L | 2253329..2253692 | 191..554 | 100 | <- | Plus |
arm_3L | 2253777..2253986 | 555..764 | 100 | <- | Plus |
arm_3L | 2255539..2255667 | 765..893 | 98 | | Plus |
BO08996.5prime Sequence
888 bp (837 high quality bases) assembled on 2006-01-10
> BO08996.5prime
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAG
GCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTCT
BO08996.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PB | 1023 | CG1275-RB | 1..872 | 17..888 | 4360 | 100 | Plus |
CG1275-PA | 1023 | CG1275-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG1275-PC | 765 | CG1275-RC | 16..614 | 290..888 | 2995 | 100 | Plus |
CG1275-PD | 732 | CG1275-RD | 1..581 | 308..888 | 2905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1574 | CG1275-RA | 198..1070 | 16..888 | 4365 | 100 | Plus |
CG1275-RB | 1698 | CG1275-RB | 322..1194 | 16..888 | 4365 | 100 | Plus |
CG1275-RC | 1300 | CG1275-RC | 207..805 | 290..888 | 2995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 864..501 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 2255538..2255813 | 291..16 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253989 | 500..288 | 1065 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 17:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-C | 11124 | TART-C TARTC 11124bp | 9338..9467 | 115..239 | 126 | 61.2 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7902..8023 | 123..239 | 122 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 168..208 | 115 | 75.6 | Plus |
BO08996.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:49 Download gff for
BO08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PB | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:07 Download gff for
BO08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:27 Download gff for
BO08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 317..1194 | 9..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:03 Download gff for
BO08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 317..1194 | 9..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:03 Download gff for
BO08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2255539..2255818 | 9..290 | 98 | | Minus |
3L | 2253248..2253271 | 865..888 | 100 | <- | Minus |
3L | 2253329..2253692 | 501..864 | 100 | <- | Minus |
3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:27 Download gff for
BO08996.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253248..2253271 | 865..888 | 100 | <- | Minus |
arm_3L | 2253329..2253692 | 501..864 | 100 | <- | Minus |
arm_3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
arm_3L | 2255539..2255818 | 9..290 | 98 | | Minus |
BO08996.complete Sequence
1054 bp (1054 high quality bases) assembled on 2006-01-18
GenBank Submission: FJ631344
> BO08996.complete
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAG
GCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGG
TGTGTTGGCCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGG
TTGTCTACCTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAG
GACACGGCTCTGCTGAACTCCAGTTCTGTCAACGAGGCAAGCTTTCTAGA
CCAT
BO08996.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1023 | CG1275-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG1275-RB | 1023 | CG1275-PB | 1..1020 | 17..1036 | 5100 | 100 | Plus |
CG1275-RC | 765 | CG1275-PC | 16..762 | 290..1036 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-RA | 1574 | CG1275-RA | 198..1218 | 16..1036 | 5105 | 100 | Plus |
CG1275-RB | 1698 | CG1275-RB | 322..1342 | 16..1036 | 5105 | 100 | Plus |
CG1275-RC | 1300 | CG1275-RC | 207..953 | 290..1036 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2253329..2253692 | 864..501 | 1820 | 100 | Minus |
3L | 28110227 | 3L | 2255538..2255813 | 291..16 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 2253777..2253989 | 500..288 | 1065 | 100 | Minus |
3L | 28110227 | 3L | 2253100..2253271 | 1036..865 | 860 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 11:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2949..2989 | 168..208 | 115 | 75.6 | Plus |
BO08996.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:18 Download gff for
BO08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RA | 1..1023 | 17..1040 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:39 Download gff for
BO08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RA | 194..1223 | 9..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:21 Download gff for
BO08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 323..1342 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:18 Download gff for
BO08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RA | 194..1223 | 9..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:49 Download gff for
BO08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1275-RB | 323..1342 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:49 Download gff for
BO08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2253098..2253271 | 865..1038 | 98 | <- | Minus |
3L | 2253329..2253692 | 501..864 | 100 | <- | Minus |
3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
3L | 2255539..2255812 | 17..290 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:21 Download gff for
BO08996.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2253098..2253271 | 865..1038 | 98 | <- | Minus |
arm_3L | 2253329..2253692 | 501..864 | 100 | <- | Minus |
arm_3L | 2253777..2253986 | 291..500 | 100 | <- | Minus |
arm_3L | 2255539..2255812 | 17..290 | 100 | | Minus |
BO08996.pep Sequence
Translation from 16 to 1054
> BO08996.pep
MSKDADVEQATKPESGVVQVEPAIPEQPQAAVPTTISTATTVIAVTNGEK
PAAATPATTATPATAEQVQPATTIAGIELATPTAAATSPPTGSGKANMDP
ALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAGTSNPGVEFNWHPLF
MTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHMGAFILTVIALKTVF
DSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGFVAFLAPGLRENYRI
AMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTPAYSTLPPAGVLANV
IGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSSSVNEASFLDH
BO08996.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1275-PA | 340 | CG1275-PA | 1..340 | 1..340 | 1731 | 100 | Plus |
CG1275-PB | 340 | CG1275-PB | 1..340 | 1..340 | 1731 | 100 | Plus |
CG1275-PC | 254 | CG1275-PC | 6..254 | 92..340 | 1284 | 100 | Plus |
CG1275-PD | 243 | CG1275-PD | 1..243 | 98..340 | 1253 | 100 | Plus |
nemy-PA | 290 | CG8776-PA | 27..271 | 81..314 | 290 | 31.6 | Plus |