Clone BO08996 Report

Search the DGRC for BO08996

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:89
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG1275-RA
Protein status:BO08996.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO08996.3prime Sequence

893 bp (773 high quality bases) assembled on 2006-01-10

> BO08996.3prime
ATGGTCTAGAAAGCTTGCCTCGTTGACAGAACTGGAGTTCAGCAGAGCCG
TGTCCTCGGGAATGGGCTTCCGCTTGTAGGAGGGCTCAGTGGCTAGGTAG
ACAACCAGCGCCCCGAAGACCACGTACATTACTCCAATCACATTGGCCAA
CACACCAGCCGGTGGAAGAGTGGAGTAAGCCGGAGTTTTGATGGCGAAGA
TGGCCTTCTCGGTTATGCCCATCAGGGCACTAGCAATAGCCAGAACGAAT
CCAAAGAGTCCGAAGTAGATGTGCAGCGGCATCATGGCGATCCTGTAGTT
CTCCCTCAACCCCGGCGCCAAAAAGGCCACAAATCCGGCCACATACTGCA
GCGAGAAGACGATCACCGCGGAGAGCCCCAGCCAAGAGTGCAGGGAGTAC
ATGTTGGGAATGGGCGGATTGGCCAAGTTGTGGGAATCGAAGACCGTCTT
CAGGGCAATCACCGTCAGAATGAATGCACCCATGTGGATGCCGGCGTGGG
TAAGCTTCAGAGTCTTCTTGCGCGTGGTGCGGAAACCACGATAGATCAGA
ATGGAGTTGCCATACAGGTAAATGAAGCCAATGGTCATGAACAGCGGATG
CCAGTTGAACTCCACGCCGGGATTTGAGGTGCCGGCCAGACCGCCGAAGT
GCTGGCCAATCCAGGTGGCCACCAGGACGATCATGGTCAGGCCGCACAGC
TGGGTGAGCACATAGAGCACCTTAAAGTTGATCAGCGCTGGATCCATGTT
GGCCTTGCCGCTGCCTGTTGGTGGTGAAGTTGCCGCCGCCGTTGGAGTGG
CCCACTCAATGCCAGCGATGGTTGTTGCAGGGTGCACTTGTTCTGCTGTC
GCAGGTGTTGCAGTTGTTGCTGGTGTCGCTGCCGCTGGCTTTT

BO08996.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PB 1023 CG1275-RB 146..1020 893..19 4325 99.7 Minus
CG1275-PA 1023 CG1275-RA 146..1020 893..19 4325 99.7 Minus
CG1275-PC 765 CG1275-RC 16..762 765..19 3735 100 Minus
CG1275-PD 732 CG1275-RD 1..729 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1574 CG1275-RA 344..1218 893..19 4345 99.8 Minus
CG1275-RB 1698 CG1275-RB 468..1342 893..19 4345 99.8 Minus
CG1275-RC 1300 CG1275-RC 207..953 765..19 3735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 191..554 1820 100 Plus
3L 28110227 3L 2253777..2253989 555..767 1065 100 Plus
3L 28110227 3L 2253100..2253271 19..190 860 100 Plus
3L 28110227 3L 2255538..2255667 764..893 620 98.5 Plus
Blast to na_te.dros performed 2015-01-31 15:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..3011 887..826 123 68.3 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7940..8023 890..816 120 66.7 Minus
TART-C 11124 TART-C TARTC 11124bp 9384..9467 890..816 120 66.7 Minus

BO08996.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:48 Download gff for BO08996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PB 146..1023 15..893 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:06 Download gff for BO08996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PA 146..1023 15..893 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:14:25 Download gff for BO08996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 468..1346 14..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:35:19 Download gff for BO08996.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 468..1346 14..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:35:19 Download gff for BO08996.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2253096..2253271 14..190 98 <- Plus
3L 2253329..2253692 191..554 100 <- Plus
3L 2253777..2253986 555..764 100 <- Plus
3L 2255539..2255667 765..893 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:14:25 Download gff for BO08996.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253096..2253271 14..190 98 <- Plus
arm_3L 2253329..2253692 191..554 100 <- Plus
arm_3L 2253777..2253986 555..764 100 <- Plus
arm_3L 2255539..2255667 765..893 98   Plus

BO08996.5prime Sequence

888 bp (837 high quality bases) assembled on 2006-01-10

> BO08996.5prime
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAG
GCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTCT

BO08996.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PB 1023 CG1275-RB 1..872 17..888 4360 100 Plus
CG1275-PA 1023 CG1275-RA 1..872 17..888 4360 100 Plus
CG1275-PC 765 CG1275-RC 16..614 290..888 2995 100 Plus
CG1275-PD 732 CG1275-RD 1..581 308..888 2905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1574 CG1275-RA 198..1070 16..888 4365 100 Plus
CG1275-RB 1698 CG1275-RB 322..1194 16..888 4365 100 Plus
CG1275-RC 1300 CG1275-RC 207..805 290..888 2995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 864..501 1820 100 Minus
3L 28110227 3L 2255538..2255813 291..16 1380 100 Minus
3L 28110227 3L 2253777..2253989 500..288 1065 100 Minus
Blast to na_te.dros performed 2015-02-11 17:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
TART-C 11124 TART-C TARTC 11124bp 9338..9467 115..239 126 61.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7902..8023 123..239 122 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..2989 168..208 115 75.6 Plus

BO08996.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:49 Download gff for BO08996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PB 1..872 17..888 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:07 Download gff for BO08996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-PA 1..872 17..888 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:21:27 Download gff for BO08996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 317..1194 9..888 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:19:03 Download gff for BO08996.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 317..1194 9..888 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:19:03 Download gff for BO08996.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2255539..2255818 9..290 98   Minus
3L 2253248..2253271 865..888 100 <- Minus
3L 2253329..2253692 501..864 100 <- Minus
3L 2253777..2253986 291..500 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:21:27 Download gff for BO08996.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253248..2253271 865..888 100 <- Minus
arm_3L 2253329..2253692 501..864 100 <- Minus
arm_3L 2253777..2253986 291..500 100 <- Minus
arm_3L 2255539..2255818 9..290 98   Minus

BO08996.complete Sequence

1054 bp (1054 high quality bases) assembled on 2006-01-18

GenBank Submission: FJ631344

> BO08996.complete
GAAGTTATCAGTCGACATGTCGAAGGACGCGGACGTGGAGCAGGCGACCA
AGCCGGAGAGCGGAGTTGTCCAGGTGGAGCCAGCGATTCCGGAGCAGCCA
CAGGCCGCCGTTCCGACCACCATCTCCACGGCGACCACAGTGATCGCGGT
GACTAATGGGGAAAAGCCAGCGGCAGCGACACCAGCAACAACTGCAACAC
CTGCGACAGCAGAACAAGTGCAACCTGCAACAACCATCGCTGGCATTGAG
TTGGCCACTCCAACGGCGGCGGCAACTTCACCACCAACAGGCAGCGGCAA
GGCCAACATGGATCCAGCGCTGATCAACTTTAAGGTGCTCTATGTGCTCA
CCCAGCTGTGCGGCCTGACCATGATCGTCCTGGTGGCCACCTGGATTGGC
CAGCACTTCGGCGGTCTGGCCGGCACCTCAAATCCCGGCGTGGAGTTCAA
CTGGCATCCGCTGTTCATGACCATTGGCTTCATTTACCTGTATGGCAACT
CCATTCTGATCTATCGTGGTTTCCGCACCACGCGCAAGAAGACTCTGAAG
CTTACCCACGCCGGCATCCACATGGGTGCATTCATTCTGACGGTGATTGC
CCTGAAGACGGTCTTCGATTCCCACAACTTGGCCAATCCGCCCATTCCCA
ACATGTACTCCCTGCACTCTTGGCTGGGGCTCTCCGCGGTGATCGTCTTC
TCGCTGCAGTATGTGGCCGGATTTGTGGCCTTTTTGGCGCCGGGGTTGAG
GGAGAACTACAGGATCGCCATGATGCCGCTGCACATCTACTTCGGACTCT
TTGGATTCGTTCTGGCTATTGCTAGTGCCCTGATGGGCATAACCGAGAAG
GCCATCTTCGCCATCAAAACTCCGGCTTACTCCACTCTTCCACCGGCTGG
TGTGTTGGCCAATGTGATTGGAGTAATGTACGTGGTCTTCGGGGCGCTGG
TTGTCTACCTAGCCACTGAGCCCTCCTACAAGCGGAAGCCCATTCCCGAG
GACACGGCTCTGCTGAACTCCAGTTCTGTCAACGAGGCAAGCTTTCTAGA
CCAT

BO08996.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1023 CG1275-PA 1..1020 17..1036 5100 100 Plus
CG1275-RB 1023 CG1275-PB 1..1020 17..1036 5100 100 Plus
CG1275-RC 765 CG1275-PC 16..762 290..1036 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-RA 1574 CG1275-RA 198..1218 16..1036 5105 100 Plus
CG1275-RB 1698 CG1275-RB 322..1342 16..1036 5105 100 Plus
CG1275-RC 1300 CG1275-RC 207..953 290..1036 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2253329..2253692 864..501 1820 100 Minus
3L 28110227 3L 2255538..2255813 291..16 1380 100 Minus
3L 28110227 3L 2253777..2253989 500..288 1065 100 Minus
3L 28110227 3L 2253100..2253271 1036..865 860 100 Minus
Blast to na_te.dros performed 2014-11-27 11:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2949..2989 168..208 115 75.6 Plus

BO08996.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:18 Download gff for BO08996.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 1..1023 17..1040 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:39 Download gff for BO08996.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 194..1223 9..1041 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:21 Download gff for BO08996.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 323..1342 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:18 Download gff for BO08996.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RA 194..1223 9..1041 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:49 Download gff for BO08996.complete
Subject Subject Range Query Range Percent Splice Strand
CG1275-RB 323..1342 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:49 Download gff for BO08996.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2253098..2253271 865..1038 98 <- Minus
3L 2253329..2253692 501..864 100 <- Minus
3L 2253777..2253986 291..500 100 <- Minus
3L 2255539..2255812 17..290 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:21 Download gff for BO08996.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2253098..2253271 865..1038 98 <- Minus
arm_3L 2253329..2253692 501..864 100 <- Minus
arm_3L 2253777..2253986 291..500 100 <- Minus
arm_3L 2255539..2255812 17..290 100   Minus

BO08996.pep Sequence

Translation from 16 to 1054

> BO08996.pep
MSKDADVEQATKPESGVVQVEPAIPEQPQAAVPTTISTATTVIAVTNGEK
PAAATPATTATPATAEQVQPATTIAGIELATPTAAATSPPTGSGKANMDP
ALINFKVLYVLTQLCGLTMIVLVATWIGQHFGGLAGTSNPGVEFNWHPLF
MTIGFIYLYGNSILIYRGFRTTRKKTLKLTHAGIHMGAFILTVIALKTVF
DSHNLANPPIPNMYSLHSWLGLSAVIVFSLQYVAGFVAFLAPGLRENYRI
AMMPLHIYFGLFGFVLAIASALMGITEKAIFAIKTPAYSTLPPAGVLANV
IGVMYVVFGALVVYLATEPSYKRKPIPEDTALLNSSSVNEASFLDH

BO08996.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1275-PA 340 CG1275-PA 1..340 1..340 1731 100 Plus
CG1275-PB 340 CG1275-PB 1..340 1..340 1731 100 Plus
CG1275-PC 254 CG1275-PC 6..254 92..340 1284 100 Plus
CG1275-PD 243 CG1275-PD 1..243 98..340 1253 100 Plus
nemy-PA 290 CG8776-PA 27..271 81..314 290 31.6 Plus