Clone Sequence Records
BO09001.3prime Sequence
890 bp (822 high quality bases) assembled on 2006-01-10
> BO09001.3prime
ATGGTCTAGAAAGCTTGCGTAGTAGAATATCTGGCCGGCCTTCTGCCGCT
TGCGCTCCTCCAGCTTGCGATTGATCTCCTGCTGCCGCTCGGCCTTGCTG
AGGGCTCTTGCCACGTACAAGAACTTGTTGTCGCCCAGCTGCTTGCCGTG
CAGGCCAATTACGGCGGCCAGCGCCGACTGTGGGTTCTCGTAGGCGACGA
AACCGAAACGCCGGGAGCGCCCCTCCTCGTCCAGCATGAGCTTGTGACTG
GTGATGCGGCCGTAGGGCTCGAACATCTCGCGCAAATGCTGCTCGGTGAA
CTCCTCGCTGAGGTTCTTCACATACAGATTCTTGAAGTGCGTGGCCTTCT
CCTGCTCCCGGTCCCGCCGTGGTATGAACTTGACCACATGCACCTTCTGA
TTATTGCACAGCATCCCATTCACCTTCTCGATGGCCGCTCGGGCGGCCTC
CTCCGAATCGAAATGCACAAACCCATAGCCGCGTGAATTGCCATCCTCGT
CTTTGGCCACATTGCAGTTTAGGATGTTTCCGAACACCGAGAACGTGTCG
TACACCGCCTTGTTGTCGATGGACCGCTCCAGGTTCTTGATATAGATCTT
GCCACTGTCCGGAGAGCTGTTGCCTCCGCTGCCCCCAGTGGAGCCGCTAG
CCAGAGCTCCCCCGCCGACTCCCACGCCCACATTGGCCGAGTGCGAGGAC
GTGGACGTGTGCCCGCTGCCCAGGGAGTTGTGGCCATGCCGTCCGAGAAC
AGCGGCGGCCGCCAGGTGGTTACTGGCTGCGTGCCCACCGCCGACGTGGC
TCANGTGACCAGCTGCAGCGGCGTGGTGGTGCAGCTGCTGCTGGTGGTGC
GCCGCTGCCAGCGTGTGGTGGTTCAGGGCCGGCTGCTGCT
BO09001.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-PA | 924 | CG4612-RA | 50..921 | 890..19 | 4341 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:03:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-RC | 3922 | CG4612-RC | 604..1475 | 890..19 | 4349 | 99.9 | Minus |
| CG4612-RA | 2091 | CG4612-RA | 604..1475 | 890..19 | 4349 | 99.9 | Minus |
| pAbp-RA | 2433 | CG5119-RA | 477..656 | 591..412 | 225 | 75 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24524774..24525423 | 241..890 | 3239 | 99.8 | Plus |
| 2R | 25286936 | 2R | 24524321..24524544 | 19..242 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 18143526..18143705 | 591..412 | 225 | 75 | Minus |
Blast to na_te.dros performed 2015-02-02 18:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2067..2131 | 741..675 | 114 | 65.7 | Minus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1184..1248 | 741..675 | 114 | 65.7 | Minus |
BO09001.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:50 Download gff for
BO09001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-PA | 50..924 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:09 Download gff for
BO09001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-PA | 50..924 | 15..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:39:20 Download gff for
BO09001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 604..1483 | 11..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:14 Download gff for
BO09001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 604..1483 | 11..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:14 Download gff for
BO09001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24524313..24524542 | 11..240 | 98 | <- | Plus |
| 2R | 24524774..24525423 | 241..890 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:39:20 Download gff for
BO09001.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20411836..20412065 | 11..240 | 98 | <- | Plus |
| arm_2R | 20412297..20412946 | 241..890 | 99 | | Plus |
BO09001.5prime Sequence
921 bp (767 high quality bases) assembled on 2006-01-10
> BO09001.5prime
GAAGTTATCAGTCGACATGTTCGTCAACTCCATGACGTTCCGCGGCAATC
CGGCGAACTACCACCAGCAGCAGCCGGCCCTGAACCACCACACGCTGGCA
GCGGCGCACCACCAGCAGCAGCTGCACCACCACGCCGCTGCAGCTGGTCA
CCTGAGCCACGTCGGCGGTGGGCACGCAGCCAGTAACCACCTGGCGGCCG
CCGCTGTTCTCGGACGGCATGGCCACAACTCCCTGGGCAGCGGGCACACG
TCCACGTCCTCGCACTCGGCCAATGTGGGCGTGGGAGTCGGCGGGGGAGC
TCTGGCTAGCGGCTCCACTGGGGGCAGCGGAGGCAACAGCTCTCCGGACA
GTGGCAAGATCTATATCAAGAACCTGGAGCGGTCCATCGACAACAAGGCG
GTGTACGACACGTTCTCGGTGTTCGGAAACATCCTAAACTGCAATGTGGC
CAAAGACGAGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATT
CGGAGGAGGCCGCCCGAGCGGCCATCGAGAAGGTGAATGGGATGCTGTGC
AATAATCAGAAGGTGCATGTGGTCAAGTTCATACCACGGCGGGACCGGGA
GCAGGAGAAGGCCACGCACTTCAAGAATCTGTATGTGAAGAACCTCAGCG
AGGAGTTCACCGAGCAGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGC
ATCACCAGTCACAAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTT
CGGTTTCGTCGCCTACGAGAACCCACAGTCGGCGCTGGCCGCCGTAATTG
GCCTGCACGGCAAGCAGCTGGGCGACAACAAGTTCTTGTACGTGGCAAGA
GCCCTCAGCAAAGGCGAGCGGCAGCAGGAGATCAATCGCAAGCTGGAGGA
GCGCAAGCGGCAGAAGGCCGG
BO09001.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-PA | 924 | CG4612-RA | 1..905 | 17..921 | 4475 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:18:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-RC | 3922 | CG4612-RC | 555..1459 | 17..921 | 4495 | 99.8 | Plus |
| CG4612-RA | 2091 | CG4612-RA | 555..1459 | 17..921 | 4495 | 99.8 | Plus |
| pAbp-RA | 2433 | CG5119-RA | 477..656 | 365..544 | 225 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24524774..24525472 | 715..17 | 3495 | 100 | Minus |
| 2R | 25286936 | 2R | 24524337..24524544 | 921..714 | 1010 | 99 | Minus |
| 2R | 25286936 | 2R | 18143526..18143705 | 365..544 | 225 | 75 | Plus |
Blast to na_te.dros performed 2015-02-04 01:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2067..2131 | 215..281 | 114 | 65.7 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1184..1248 | 215..281 | 114 | 65.7 | Plus |
BO09001.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:51 Download gff for
BO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:11 Download gff for
BO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:42 Download gff for
BO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 547..1459 | 9..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:34 Download gff for
BO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 547..1459 | 9..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:34 Download gff for
BO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24524337..24524542 | 716..921 | 99 | <- | Minus |
| 2R | 24524774..24525480 | 9..715 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:42 Download gff for
BO09001.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20411860..20412065 | 716..921 | 99 | <- | Minus |
| arm_2R | 20412297..20413003 | 9..715 | 99 | | Minus |
BO09001.complete Sequence
955 bp (955 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631345
> BO09001.complete
GAAGTTATCAGTCGACATGTTCGTCAACTCCATGACGTTCCGCGGCAATC
CGGCGAACTACCACCAGCAGCAGCCGGCCCTGAACCACCACACGCTGGCA
GCGGCGCACCACCAGCAGCAGCTGCACCACCACGCCGCTGCAGCTGGTCA
CCTGAGCCACGTCGGCGGTGGGCACGCAGCCAGTAACCACCTGGCGGCCG
CCGCTGTTCTCGGACGGCATGGCCACAACTCCCTGGGCAGCGGGCACACG
TCCACGTCCTCGCACTCGGCCAATGTGGGCGTGGGAGTCGGCGGGGGAGC
TCTGGCTAGCGGCTCCACTGGGGGCAGCGGAGGCAACAGCTCTCCGGACA
GTGGCAAGATCTATATCAAGAACCTGGAGCGGTCCATCGACAACAAGGCG
GTGTACGACACGTTCTCGGTGTTCGGAAACATCCTAAACTGCAATGTGGC
CAAAGACGAGGATGGCAATTCACGCGGCTATGGGTTTGTGCATTTCGATT
CGGAGGAGGCCGCCCGAGCGGCCATCGAGAAGGTGAATGGGATGCTGTGC
AATAATCAGAAGGTGCATGTGGTCAAGTTCATACCACGGCGGGACCGGGA
GCAGGAGAAGGCCACGCACTTCAAGAATCTGTATGTGAAGAACCTCAGCG
AGGAGTTCACCGAGCAGCATTTGCGCGAGATGTTCGAGCCCTACGGCCGC
ATCACCAGTCACAAGCTCATGCTGGACGAGGAGGGGCGCTCCCGGCGTTT
CGGTTTCGTCGCCTACGAGAACCCACAGTCGGCGCTGGCCGCCGTAATTG
GCCTGCACGGCAAGCAGCTGGGCGACAACAAGTTCTTGTACGTGGCAAGA
GCCCTCAGCAAGGCCGAGCGGCAGCAGGAGATCAATCGCAAGCTGGAGGA
GCGCAAGCGGCAGAAGGCCGGCCAGATATTCTACTACGCAAGCTTTCTAG
ACCAT
BO09001.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-RC | 924 | CG4612-PC | 1..921 | 17..937 | 4605 | 100 | Plus |
| CG4612-RA | 924 | CG4612-PA | 1..921 | 17..937 | 4605 | 100 | Plus |
| pAbp-RA | 1905 | CG5119-PA | 280..459 | 365..544 | 225 | 75 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-RC | 3922 | CG4612-RC | 555..1475 | 17..937 | 4605 | 100 | Plus |
| CG4612-RA | 2091 | CG4612-RA | 555..1475 | 17..937 | 4605 | 100 | Plus |
| pAbp-RA | 2433 | CG5119-RA | 477..656 | 365..544 | 225 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24524774..24525472 | 715..17 | 3495 | 100 | Minus |
| 2R | 25286936 | 2R | 24524321..24524544 | 937..714 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 18143526..18143705 | 365..544 | 225 | 75 | Plus |
Blast to na_te.dros performed 2014-11-28 00:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2067..2131 | 215..281 | 114 | 65.7 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 1184..1248 | 215..281 | 114 | 65.7 | Plus |
BO09001.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:56 Download gff for
BO09001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 1..924 | 17..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:55 Download gff for
BO09001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 552..1488 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:10 Download gff for
BO09001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 560..1475 | 22..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:56 Download gff for
BO09001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 552..1488 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:17 Download gff for
BO09001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4612-RA | 560..1475 | 22..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:17 Download gff for
BO09001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24524319..24524542 | 716..939 | 99 | <- | Minus |
| 2R | 24524774..24525467 | 22..715 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:10 Download gff for
BO09001.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20411842..20412065 | 716..939 | 99 | <- | Minus |
| arm_2R | 20412297..20412990 | 22..715 | 100 | | Minus |
BO09001.pep Sequence
Translation from 16 to 955
> BO09001.pep
MFVNSMTFRGNPANYHQQQPALNHHTLAAAHHQQQLHHHAAAAGHLSHVG
GGHAASNHLAAAAVLGRHGHNSLGSGHTSTSSHSANVGVGVGGGALASGS
TGGSGGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDG
NSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKAT
HFKNLYVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAY
ENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEERKRQK
AGQIFYYASFLDH
BO09001.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4612-PC | 307 | CG4612-PC | 1..307 | 1..307 | 1611 | 100 | Plus |
| CG4612-PA | 307 | CG4612-PA | 1..307 | 1..307 | 1611 | 100 | Plus |
| pAbp-PA | 634 | CG5119-PA | 90..285 | 113..305 | 628 | 60.2 | Plus |
| pAbp-PB | 634 | CG5119-PB | 90..285 | 113..305 | 628 | 60.2 | Plus |
| pAbp-PC | 634 | CG5119-PC | 90..285 | 113..305 | 628 | 60.2 | Plus |
| pAbp-PA | 634 | CG5119-PA | 185..392 | 115..305 | 328 | 36.8 | Plus |
| pAbp-PB | 634 | CG5119-PB | 185..392 | 115..305 | 328 | 36.8 | Plus |
| pAbp-PA | 634 | CG5119-PA | 4..178 | 115..292 | 206 | 26.8 | Plus |
| pAbp-PB | 634 | CG5119-PB | 4..178 | 115..292 | 206 | 26.8 | Plus |
