Clone Sequence Records
BO09002.3prime Sequence
892 bp (828 high quality bases) assembled on 2006-01-10
> BO09002.3prime
ATGGTCTAGAAAGCTTGCACCAAATAATGCGGCATTGCTTGCCGGCAAAT
CCTCAAAGAGGACTTCCGATCGTGAGCTGATTATATACACCAAACAGAAG
GATATTATCAGCACCACTATGCCAACGCTTAGAGTTGTGACCTGGTGCAC
ATTGGACGGGCGCAGGAAGATGCGTGCACTGAACTGTGACCAGGTGGATT
CAGTCCAAGTGGAATACATGCCGGAACTCCAATCGTAGCCATCAATAAGA
AAAGCTGGACTCAGGGCGTGACTGTAGTTCTGCGTGGTGAGGCGACACTC
TCCGATATTGTTGAATCCGGCGAAATAGTGCAGCGGCAAGTCGGTGCAGT
TATCTCTGTGAATGTCTGGCTGCAGTTGTGACAGGAGATAGCCCAGCAAT
CTATACGTATAGCCCGACGACTCTTGAGAGCCACCCAAGACGCTTATGTA
GCGCATCGGAGGCAAATTGGTGAGCTGACTGCCCGGATAAGATGCGGCCT
TAAAGAGTGGGCAGTCCGCCGATTGCAGGAAACAGTAAAGGAACTCATCT
GCCATCAGAGGGTTGGCCACCTTGGTGCCAGTGTACTCCTTTCCAGTTAT
TGTCTGATATAGGGCCATGGCCACAATAGAGGAAACGTTGCGCACTTTCA
TTTGCAGTGAATCTGGGTTCAAGCTTTTAAAGTCATTAACTTCCGTCAGC
TGGGTGAAATCCTTGCTTGTGTTCGCATAGGTGAAGTCCACGTTATCCGC
GTCATCGTATATGGAATGATAATACTTGTTCGTTGGACGAGCGTTTAGAA
TCAATGCATTGAAGTTTGGATCACGTCGCAGAAATGATTGCGCCGACGTA
GGTGGTAAGTGAGCGCTCATCTCGGACTGAATGTTCAGGTTA
BO09002.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7012-PB | 1998 | nct-RB | 1122..1995 | 892..19 | 4370 | 100 | Minus |
| CG7012-PA | 2088 | nct-RA | 1212..2085 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-RC | 2768 | CG7012-RC | 1260..2133 | 892..19 | 4370 | 100 | Minus |
| nct-RA | 2409 | CG7012-RA | 1260..2133 | 892..19 | 4370 | 100 | Minus |
| nct-RE | 2631 | CG7012-RE | 1260..2125 | 892..27 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24853099..24853539 | 892..452 | 2205 | 100 | Minus |
| 3R | 32079331 | 3R | 24853602..24853815 | 452..239 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 24853875..24854086 | 240..29 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:25:22 has no hits.
BO09002.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:52 Download gff for
BO09002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-PB | 1123..1998 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:13 Download gff for
BO09002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7012-PA | 1213..2088 | 16..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:04 Download gff for
BO09002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 1261..2133 | 19..891 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:08:26 Download gff for
BO09002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 1261..2133 | 19..891 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:08:26 Download gff for
BO09002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24853603..24853814 | 240..451 | 100 | -> | Minus |
| 3R | 24853876..24854086 | 29..239 | 100 | | Minus |
| 3R | 24853100..24853539 | 452..891 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:04 Download gff for
BO09002.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20678822..20679261 | 452..891 | 100 | -> | Minus |
| arm_3R | 20679325..20679536 | 240..451 | 100 | -> | Minus |
| arm_3R | 20679598..20679808 | 29..239 | 100 | | Minus |
BO09002.5prime Sequence
836 bp (788 high quality bases) assembled on 2006-01-10
> BO09002.5prime
GAAGTTATCAGTCGACATGGAAATGCGTCTGAATGCGGCTTCCATATGGC
TGTTAATACTGTCGTATGGAGCAACTATTGCTCAAGGAGAAAGAACCCGC
GATAAGATGTACGAGCCCATTGGAGGAGCTAGCTGTTTCCGACGGCTGAA
TGGCACCCATCAGACAGGCTGTTCCTCAACCTACTCCGGTTCCGTGGGCG
TACTACATCTAATAAACGTCGAGGCCGACCTGGAATTTCTTCTTAGCAGC
CCACCATCTCCACCTTACGCCCCCATGATACCACCTCACCTGTTCACACG
TAACAACCTGATGCGCCTAAAGGAAGCCGGACCAAAGAACATTTCTGTGG
TGCTGCTGATCAACCGCACGAACCAGATGAAGCAGTTCTCGCACGAACTC
AACTGCCCCAATCAGTACAGCGGCCTGAACAGCACCAGTGAGACCTGCGA
CGCCAGCAATCCAGCCAAAAACTGGAATCCCTGGGGCACTGGACTTCTGC
ACGAGGACTTTCCCTTTCCTATCTATTACATAGCCGATTTGGATCAGGTC
ACCAAGCTAGAGAAGTGCTTTCAGGACTTTAACAACCATAACTACGAGAC
GCACGCGCTGCGTAGCTTGTGCGCCGTCGAGGTCAAGTCCTTTATGTCCG
CCGCTGTCAACACCGAGGTCTGTATGCGCCGCACCAACTTCATCAATAAT
CTTGGAGGAAGCAAGTACTGCGATCCGCTCGAGGGACGGAATGTTTACGC
CACCTTGTACCCCCGAAAGCCAGCAATCGAAAACAACTTGGAGACAGTCC
ATACGAATGAAAAGTTCATATTAGTAACCTGTCGCC
BO09002.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7012-PA | 2088 | nct-RA | 1..820 | 17..836 | 4100 | 100 | Plus |
| CG7012-PB | 1998 | nct-RB | 1..730 | 107..836 | 3650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-RE | 2631 | CG7012-RE | 49..868 | 17..836 | 4100 | 100 | Plus |
| nct-RD | 2606 | CG7012-RD | 49..868 | 17..836 | 4100 | 100 | Plus |
| nct-RC | 2768 | CG7012-RC | 49..868 | 17..836 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:45:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24851986..24852645 | 177..836 | 3300 | 100 | Plus |
| 3R | 32079331 | 3R | 24851837..24851933 | 80..176 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 24851649..24851712 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:45:41 has no hits.
BO09002.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:54 Download gff for
BO09002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:14 Download gff for
BO09002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7012-PA | 1..820 | 17..836 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:46 Download gff for
BO09002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 42..868 | 7..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:29 Download gff for
BO09002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RC | 42..868 | 7..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:29 Download gff for
BO09002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24851838..24851933 | 81..176 | 100 | -> | Plus |
| 3R | 24851642..24851712 | 7..80 | 94 | -> | Plus |
| 3R | 24851986..24852645 | 177..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:46 Download gff for
BO09002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20677364..20677434 | 7..80 | 94 | -> | Plus |
| arm_3R | 20677560..20677655 | 81..176 | 100 | -> | Plus |
| arm_3R | 20677708..20678367 | 177..836 | 100 | | Plus |
BO09002.complete Sequence
2119 bp (2119 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631346
> BO09002.complete
GAAGTTATCAGTCGACATGGAAATGCGTCTGAATGCGGCTTCCATATGGC
TGTTAATACTGTCGTATGGAGCAACTATTGCTCAAGGAGAAAGAACCCGC
GATAAGATGTACGAGCCCATTGGAGGAGCTAGCTGTTTCCGACGGCTGAA
TGGCACCCATCAGACAGGCTGTTCCTCAACCTACTCCGGTTCCGTGGGCG
TACTACATCTAATAAACGTCGAGGCCGACCTGGAATTTCTTCTTAGCAGC
CCACCATCTCCACCTTACGCCCCCATGATACCACCTCACCTGTTCACACG
TAACAACCTGATGCGCCTAAAGGAAGCCGGACCAAAGAACATTTCTGTGG
TGCTGCTGATCAACCGCACGAACCAGATGAAGCAGTTCTCGCACGAACTC
AACTGCCCCAATCAGTACAGCGGCCTGAACAGCACCAGTGAGACCTGCGA
CGCCAGCAATCCAGCCAAAAACTGGAATCCCTGGGGCACTGGACTTCTGC
ACGAGGACTTTCCCTTTCCTATCTATTACATAGCCGATTTGGATCAGGTC
ACCAAGCTAGAGAAGTGCTTTCAGGACTTTAACAACCATAACTACGAGAC
GCACGCGCTGCGTAGCTTGTGCGCCGTCGAGGTCAAGTCCTTTATGTCCG
CCGCTGTCAACACCGAGGTCTGTATGCGCCGCACCAACTTCATCAATAAT
CTTGGAGGAAGCAAGTACTGCGATCCGCTCGAGGGACGGAATGTTTACGC
CACCTTGTACCCCCGAAAGCCAGCAATCGAAAACAACTTGGAGACAGTCC
ATACGAATGAAAAGTTCATATTAGTAACCTGTCGCCTGGACACCACCACC
ATGTTCGATGGCGTCGGTCTTGGAGCCATGGACTCCCTCATGGGATTTGC
TGTTTTCACTCATGTGGCGTATCTATTAAAACAACTACTTCCGCCGCAAA
GCAAAGACCTTCATAATGTCCTCTTTGTGACTTTTAATGGCGAATCCTAT
GACTACATTGGTTCTCAAAGATTTGTATACGACATGGAGAAACTTCAATT
TCCTACTGAATCCACAGGCACGCCTCCGATTGCCTTTGACAATATTGACT
TCATGCTGGACATCGGGACACTGGATGACATATCGAATATTAAGCTGCAT
GCGTTAAATGGAACGACTTTGGCTCAGCAAATTCTAGAGCGGCTAAATAA
CTATGCGAAGTCGCCACGCTATGGCTTTAACCTGAACATTCAGTCCGAGA
TGAGCGCTCACTTACCACCTACGTCGGCGCAATCATTTCTGCGACGTGAT
CCAAACTTCAATGCATTGATTCTAAACGCTCGTCCAACGAACAAGTATTA
TCATTCCATATACGATGACGCGGATAACGTGGACTTCACCTATGCGAACA
CAAGCAAGGATTTCACCCAGCTGACGGAAGTTAATGACTTTAAAAGCTTG
AACCCAGATTCACTGCAAATGAAAGTGCGCAACGTTTCCTCTATTGTGGC
CATGGCCCTATATCAGACAATAACTGGAAAGGAGTACACTGGCACCAAGG
TGGCCAACCCTCTGATGGCAGATGAGTTCCTTTACTGTTTCCTGCAATCG
GCGGACTGCCCACTCTTTAAGGCCGCATCTTATCCGGGCAGTCAGCTCAC
CAATTTGCCTCCGATGCGCTACATAAGCGTCTTGGGTGGCTCTCAAGAGT
CGTCGGGCTATACGTATAGATTGCTGGGCTATCTCCTGTCACAACTGCAG
CCAGACATTCACAGAGATAACTGCACCGACTTGCCGCTGCACTATTTCGC
CGGATTCAACAATATCGGAGAGTGTCGCCTCACCACGCAGAACTACAGTC
ACGCCCTGAGTCCAGCTTTTCTTATTGATGGCTACGATTGGAGTTCCGGC
ATGTATTCCACTTGGACTGAATCCACCTGGTCACAGTTCAGTGCACGCAT
CTTCCTGCGCCCGTCCAATGTGCACCAGGTCACAACTCTAAGCGTTGGCA
TAGTGGTGCTGATAATATCCTTCTGTTTGGTGTATATAATCAGCTCACGA
TCGGAAGTCCTCTTTGAGGATTTGCCGGCAAGCAATGCCGCATTATTTGG
TGCAAGCTTTCTAGACCAT
BO09002.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-RC | 2088 | CG7012-PC | 1..2085 | 17..2101 | 10425 | 100 | Plus |
| nct-RA | 2088 | CG7012-PA | 1..2085 | 17..2101 | 10425 | 100 | Plus |
| nct-RE | 2100 | CG7012-PE | 1..2077 | 17..2093 | 10385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-RC | 2768 | CG7012-RC | 49..2133 | 17..2101 | 10425 | 100 | Plus |
| nct-RA | 2409 | CG7012-RA | 49..2133 | 17..2101 | 10425 | 100 | Plus |
| nct-RE | 2631 | CG7012-RE | 49..2125 | 17..2093 | 10385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24852737..24853539 | 866..1668 | 4015 | 100 | Plus |
| 3R | 32079331 | 3R | 24851986..24852677 | 177..868 | 3460 | 100 | Plus |
| 3R | 32079331 | 3R | 24853602..24853815 | 1668..1881 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 24853875..24854086 | 1880..2091 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 24851837..24851933 | 80..176 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 24851649..24851712 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:36:58 has no hits.
BO09002.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:45 Download gff for
BO09002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 1..2088 | 17..2104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:52 Download gff for
BO09002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 56..2147 | 7..2101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:24 Download gff for
BO09002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 49..2133 | 17..2103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:46 Download gff for
BO09002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 56..2147 | 7..2101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:39 Download gff for
BO09002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nct-RA | 49..2133 | 17..2103 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:39 Download gff for
BO09002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24851649..24851712 | 17..80 | 100 | -> | Plus |
| 3R | 24851838..24851933 | 81..176 | 100 | -> | Plus |
| 3R | 24851986..24852675 | 177..866 | 100 | -> | Plus |
| 3R | 24852738..24853539 | 867..1668 | 100 | -> | Plus |
| 3R | 24853603..24853814 | 1669..1880 | 100 | -> | Plus |
| 3R | 24853876..24854086 | 1881..2091 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:24 Download gff for
BO09002.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20677371..20677434 | 17..80 | 100 | -> | Plus |
| arm_3R | 20677560..20677655 | 81..176 | 100 | -> | Plus |
| arm_3R | 20677708..20678397 | 177..866 | 100 | -> | Plus |
| arm_3R | 20678460..20679261 | 867..1668 | 100 | -> | Plus |
| arm_3R | 20679325..20679536 | 1669..1880 | 100 | -> | Plus |
| arm_3R | 20679598..20679808 | 1881..2091 | 100 | | Plus |
BO09002.pep Sequence
Translation from 16 to 2119
> BO09002.pep
MEMRLNAASIWLLILSYGATIAQGERTRDKMYEPIGGASCFRRLNGTHQT
GCSSTYSGSVGVLHLINVEADLEFLLSSPPSPPYAPMIPPHLFTRNNLMR
LKEAGPKNISVVLLINRTNQMKQFSHELNCPNQYSGLNSTSETCDASNPA
KNWNPWGTGLLHEDFPFPIYYIADLDQVTKLEKCFQDFNNHNYETHALRS
LCAVEVKSFMSAAVNTEVCMRRTNFINNLGGSKYCDPLEGRNVYATLYPR
KPAIENNLETVHTNEKFILVTCRLDTTTMFDGVGLGAMDSLMGFAVFTHV
AYLLKQLLPPQSKDLHNVLFVTFNGESYDYIGSQRFVYDMEKLQFPTEST
GTPPIAFDNIDFMLDIGTLDDISNIKLHALNGTTLAQQILERLNNYAKSP
RYGFNLNIQSEMSAHLPPTSAQSFLRRDPNFNALILNARPTNKYYHSIYD
DADNVDFTYANTSKDFTQLTEVNDFKSLNPDSLQMKVRNVSSIVAMALYQ
TITGKEYTGTKVANPLMADEFLYCFLQSADCPLFKAASYPGSQLTNLPPM
RYISVLGGSQESSGYTYRLLGYLLSQLQPDIHRDNCTDLPLHYFAGFNNI
GECRLTTQNYSHALSPAFLIDGYDWSSGMYSTWTESTWSQFSARIFLRPS
NVHQVTTLSVGIVVLIISFCLVYIISSRSEVLFEDLPASNAALFGASFLD
H
BO09002.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nct-PC | 695 | CG7012-PC | 1..695 | 1..695 | 3673 | 100 | Plus |
| nct-PA | 695 | CG7012-PA | 1..695 | 1..695 | 3673 | 100 | Plus |
| nct-PE | 699 | CG7012-PE | 1..692 | 1..692 | 3657 | 100 | Plus |
| nct-PD | 692 | CG7012-PD | 1..692 | 1..692 | 3657 | 100 | Plus |
