Clone Sequence Records
BO09004.3prime Sequence
911 bp (862 high quality bases) assembled on 2006-01-10
> BO09004.3prime
ATGGTCTAGAAAGCTTGCAAGCGGTTTCCTGAACTTTGTCTGAATCCACA
CGCGGTACATTTTCAAGCCGCGACAGCGATTAACTTGCAGTCTTCGGTCC
ACAATGAGCTGCTCCTCCTGCAGCCCCGCTTGAGTCATCATACCCCGCAG
TTCTTCCTCCGTGAAGAAGTACACCATGGTGCCGTCGCCTCGCACGTAGA
AGTTGTCCTCCATACACTTGCCGCTCTTGAAGCGCAGCTGTGCCAGGTCG
TATCGTCCGTAGTCGCGGAAGAGGAGCAAGCCACCGGGACGCAGGTAGCG
ATAGCAATTGTCCAATACCCGCTGCATTTTCTTTGGCTCAATTGCGGACA
GCACAAAAATCATCACAATAATGTCCTGTGAGTTTTCCTCGAAGGGCACC
TGCCAATGATCCAGCGTGGCATCCATGACAAACACCTCGCAGCGCTTCTC
GTCGAACTGCCGTTGGCTTCGCAGGATTTCAATGGCCCGGGCGGAGAAGT
CACATCCGAAAACCTTGAGCTGCGGTTCAGAGCTGTACTGTAGAAGGGGT
AAAATTGTGTTTCCTACTCCACAGCCCAGTTCGAAAATGCTACGTGGTTG
CAGTACCGCCGAATCCGCCGCCAGAGGAGCTAGTTCGGGGAACTCCGTAA
ACAGCCAGTGGCGATCCTTGAAGAAGCGGTTGTCGTGAATGCCGTAGAAG
GAATCCCAAAACTTGGGGGCGTCTGTCTGAAATCGCTCCTTCTGCTCCGC
TTCCATCTTTGAGGTCGAATTCTTGGCTACAGCCGCCTTCGCGGCCAGTT
CCTGCTCTTCATCCCATTGCACGTGGTCCCAGGCGTTAAACTCGAACACC
TCTCGCGCGTCGGTGAGCACCCGGCTGCCCGCTCCCGACGGTTTTTTACG
CTGGCGAGTGT
BO09004.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13929-PB | 978 | metl-RB | 83..975 | 911..19 | 4465 | 100 | Minus |
CG13929-PA | 909 | metl-RA | 94..906 | 831..19 | 4065 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 1240 | CG13929-RB | 246..1138 | 911..19 | 4465 | 100 | Minus |
metl-RA | 1107 | CG13929-RA | 193..1005 | 831..19 | 4065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1638044..1638855 | 19..830 | 4060 | 100 | Plus |
3L | 28110227 | 3L | 1638908..1638990 | 829..911 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:08:18 has no hits.
BO09004.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:56 Download gff for
BO09004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 83..978 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:17 Download gff for
BO09004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 83..978 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:57:47 Download gff for
BO09004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 246..1141 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:19 Download gff for
BO09004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 246..1141 | 15..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:19 Download gff for
BO09004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1638040..1638854 | 15..829 | 99 | <- | Plus |
3L | 1638909..1638990 | 830..911 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:57:47 Download gff for
BO09004.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1638040..1638854 | 15..829 | 99 | <- | Plus |
arm_3L | 1638909..1638990 | 830..911 | 100 | | Plus |
BO09004.5prime Sequence
904 bp (888 high quality bases) assembled on 2006-01-10
> BO09004.5prime
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAAGAGGAGCA
GCTC
BO09004.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13929-PB | 978 | metl-RB | 1..888 | 17..904 | 4415 | 99.8 | Plus |
CG13929-PA | 909 | metl-RA | 94..819 | 179..904 | 3605 | 99.8 | Plus |
CG13929-PA | 909 | metl-RA | 65..96 | 17..48 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 1240 | CG13929-RB | 164..1051 | 17..904 | 4425 | 99.9 | Plus |
metl-RA | 1107 | CG13929-RA | 193..918 | 179..904 | 3615 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1638131..1638855 | 904..180 | 3610 | 99.9 | Minus |
3L | 28110227 | 3L | 1638908..1639072 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:54:30 has no hits.
BO09004.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:57 Download gff for
BO09004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:19 Download gff for
BO09004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13929-PB | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:13 Download gff for
BO09004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 158..1051 | 8..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:56 Download gff for
BO09004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 158..1051 | 8..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:56 Download gff for
BO09004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1638131..1638854 | 181..904 | 99 | <- | Minus |
3L | 1638909..1639078 | 8..180 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:13 Download gff for
BO09004.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1638909..1639078 | 8..180 | 97 | | Minus |
arm_3L | 1638131..1638854 | 181..904 | 99 | <- | Minus |
BO09004.complete Sequence
1009 bp (1009 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631347
> BO09004.complete
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAGGAGGAGCA
GCTCATTGTGGACCGAAGACTGCAAGTTAATCGCTGTCGCGGCTTGAAAA
TGTACCGCGTGTGGATTCAGACAAAGTTCAGGAAACCGCTTGCAAGCTTT
CTAGACCAT
BO09004.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 978 | CG13929-PB | 1..975 | 17..991 | 4875 | 100 | Plus |
metl-RA | 909 | CG13929-PA | 94..906 | 179..991 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-RB | 1240 | CG13929-RB | 164..1138 | 17..991 | 4875 | 100 | Plus |
metl-RA | 1107 | CG13929-RA | 193..1005 | 179..991 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1638044..1638855 | 991..180 | 4060 | 100 | Minus |
3L | 28110227 | 3L | 1638908..1639072 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:38:46 has no hits.
BO09004.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:57 Download gff for
BO09004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 1..978 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:56 Download gff for
BO09004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 154..1137 | 8..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:25 Download gff for
BO09004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 164..1138 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:57 Download gff for
BO09004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 154..1137 | 8..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:34 Download gff for
BO09004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
metl-RB | 164..1138 | 17..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:34 Download gff for
BO09004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1638042..1638854 | 181..993 | 99 | <- | Minus |
3L | 1638909..1639072 | 17..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:25 Download gff for
BO09004.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1638042..1638854 | 181..993 | 99 | <- | Minus |
arm_3L | 1638909..1639072 | 17..180 | 100 | | Minus |
BO09004.pep Sequence
Translation from 16 to 1009
> BO09004.pep
MLTTSSSTMLGKYGWQILRRLASKSWEHTRQRKKPSGAGSRVLTDAREVF
EFNAWDHVQWDEEQELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDSFY
GIHDNRFFKDRHWLFTEFPELAPLAADSAVLQPRSIFELGCGVGNTILPL
LQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVP
FEENSQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDL
AQLRFKSGKCMEDNFYVRGDGTMVYFFTEEELRGMMTQAGLQEEQLIVDR
RLQVNRCRGLKMYRVWIQTKFRKPLASFLDH
BO09004.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
metl-PB | 325 | CG13929-PB | 1..325 | 1..325 | 1720 | 100 | Plus |
metl-PA | 302 | CG13929-PA | 8..302 | 31..325 | 1495 | 95.6 | Plus |
CG34195-PA | 283 | CG34195-PA | 27..280 | 74..323 | 480 | 39.7 | Plus |