Clone BO09004 Report

Search the DGRC for BO09004

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:4
Vector:pDNR-Dual
Associated Gene/Transcriptmetl-RB
Protein status:BO09004.pep: validated full length
Sequenced Size:1009

Clone Sequence Records

BO09004.3prime Sequence

911 bp (862 high quality bases) assembled on 2006-01-10

> BO09004.3prime
ATGGTCTAGAAAGCTTGCAAGCGGTTTCCTGAACTTTGTCTGAATCCACA
CGCGGTACATTTTCAAGCCGCGACAGCGATTAACTTGCAGTCTTCGGTCC
ACAATGAGCTGCTCCTCCTGCAGCCCCGCTTGAGTCATCATACCCCGCAG
TTCTTCCTCCGTGAAGAAGTACACCATGGTGCCGTCGCCTCGCACGTAGA
AGTTGTCCTCCATACACTTGCCGCTCTTGAAGCGCAGCTGTGCCAGGTCG
TATCGTCCGTAGTCGCGGAAGAGGAGCAAGCCACCGGGACGCAGGTAGCG
ATAGCAATTGTCCAATACCCGCTGCATTTTCTTTGGCTCAATTGCGGACA
GCACAAAAATCATCACAATAATGTCCTGTGAGTTTTCCTCGAAGGGCACC
TGCCAATGATCCAGCGTGGCATCCATGACAAACACCTCGCAGCGCTTCTC
GTCGAACTGCCGTTGGCTTCGCAGGATTTCAATGGCCCGGGCGGAGAAGT
CACATCCGAAAACCTTGAGCTGCGGTTCAGAGCTGTACTGTAGAAGGGGT
AAAATTGTGTTTCCTACTCCACAGCCCAGTTCGAAAATGCTACGTGGTTG
CAGTACCGCCGAATCCGCCGCCAGAGGAGCTAGTTCGGGGAACTCCGTAA
ACAGCCAGTGGCGATCCTTGAAGAAGCGGTTGTCGTGAATGCCGTAGAAG
GAATCCCAAAACTTGGGGGCGTCTGTCTGAAATCGCTCCTTCTGCTCCGC
TTCCATCTTTGAGGTCGAATTCTTGGCTACAGCCGCCTTCGCGGCCAGTT
CCTGCTCTTCATCCCATTGCACGTGGTCCCAGGCGTTAAACTCGAACACC
TCTCGCGCGTCGGTGAGCACCCGGCTGCCCGCTCCCGACGGTTTTTTACG
CTGGCGAGTGT

BO09004.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG13929-PB 978 metl-RB 83..975 911..19 4465 100 Minus
CG13929-PA 909 metl-RA 94..906 831..19 4065 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 1240 CG13929-RB 246..1138 911..19 4465 100 Minus
metl-RA 1107 CG13929-RA 193..1005 831..19 4065 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1638044..1638855 19..830 4060 100 Plus
3L 28110227 3L 1638908..1638990 829..911 415 100 Plus
Blast to na_te.dros performed on 2015-02-10 19:08:18 has no hits.

BO09004.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:56 Download gff for BO09004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 83..978 15..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:17 Download gff for BO09004.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 83..978 15..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:57:47 Download gff for BO09004.3prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 246..1141 15..911 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:19 Download gff for BO09004.3prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 246..1141 15..911 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:19 Download gff for BO09004.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1638040..1638854 15..829 99 <- Plus
3L 1638909..1638990 830..911 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:57:47 Download gff for BO09004.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1638040..1638854 15..829 99 <- Plus
arm_3L 1638909..1638990 830..911 100   Plus

BO09004.5prime Sequence

904 bp (888 high quality bases) assembled on 2006-01-10

> BO09004.5prime
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAAGAGGAGCA
GCTC

BO09004.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13929-PB 978 metl-RB 1..888 17..904 4415 99.8 Plus
CG13929-PA 909 metl-RA 94..819 179..904 3605 99.8 Plus
CG13929-PA 909 metl-RA 65..96 17..48 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 1240 CG13929-RB 164..1051 17..904 4425 99.9 Plus
metl-RA 1107 CG13929-RA 193..918 179..904 3615 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1638131..1638855 904..180 3610 99.9 Minus
3L 28110227 3L 1638908..1639072 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:54:30 has no hits.

BO09004.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:57 Download gff for BO09004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 1..888 17..904 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:19 Download gff for BO09004.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13929-PB 1..888 17..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:41:13 Download gff for BO09004.5prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 158..1051 8..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:56 Download gff for BO09004.5prime
Subject Subject Range Query Range Percent Splice Strand
metl-RB 158..1051 8..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:56 Download gff for BO09004.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1638131..1638854 181..904 99 <- Minus
3L 1638909..1639078 8..180 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:41:13 Download gff for BO09004.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1638909..1639078 8..180 97   Minus
arm_3L 1638131..1638854 181..904 99 <- Minus

BO09004.complete Sequence

1009 bp (1009 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631347

> BO09004.complete
GAAGTTATCAGTCGACATGCTGACGACGTCTTCAAGCACAATGCTTGGTA
AATATGGGTGGCAAATCCTCCGGAGATTGGCCAGCAAAAGTTGGGAACAC
ACTCGCCAGCGTAAAAAACCGTCGGGAGCGGGCAGCCGGGTGCTCACCGA
CGCGCGAGAGGTGTTCGAGTTTAACGCCTGGGACCACGTGCAATGGGATG
AAGAGCAGGAACTGGCCGCGAAGGCGGCTGTAGCCAAGAATTCGACCTCA
AAGATGGAAGCGGAGCAGAAGGAGCGATTTCAGACAGACGCCCCCAAGTT
TTGGGATTCCTTCTACGGCATTCACGACAACCGCTTCTTCAAGGATCGCC
ACTGGCTGTTTACGGAGTTCCCCGAACTAGCTCCTCTGGCGGCGGATTCG
GCGGTACTGCAACCACGTAGCATTTTCGAACTGGGCTGTGGAGTAGGAAA
CACAATTTTACCCCTTCTACAGTACAGCTCTGAACCGCAGCTCAAGGTTT
TCGGATGTGACTTCTCCGCCCGGGCCATTGAAATCCTGCGAAGCCAACGG
CAGTTCGACGAGAAGCGCTGCGAGGTGTTTGTCATGGATGCCACGCTGGA
TCATTGGCAGGTGCCCTTCGAGGAAAACTCACAGGACATTATTGTGATGA
TTTTTGTGCTGTCCGCAATTGAGCCAAAGAAAATGCAGCGGGTATTGGAC
AATTGCTATCGCTACCTGCGTCCCGGTGGCTTGCTCCTCTTCCGCGACTA
CGGACGATACGACCTGGCACAGCTGCGCTTCAAGAGCGGCAAGTGTATGG
AGGACAACTTCTACGTGCGAGGCGACGGCACCATGGTGTACTTCTTCACG
GAGGAAGAACTGCGGGGTATGATGACTCAAGCGGGGCTGCAGGAGGAGCA
GCTCATTGTGGACCGAAGACTGCAAGTTAATCGCTGTCGCGGCTTGAAAA
TGTACCGCGTGTGGATTCAGACAAAGTTCAGGAAACCGCTTGCAAGCTTT
CTAGACCAT

BO09004.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 978 CG13929-PB 1..975 17..991 4875 100 Plus
metl-RA 909 CG13929-PA 94..906 179..991 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
metl-RB 1240 CG13929-RB 164..1138 17..991 4875 100 Plus
metl-RA 1107 CG13929-RA 193..1005 179..991 4065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1638044..1638855 991..180 4060 100 Minus
3L 28110227 3L 1638908..1639072 181..17 825 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:38:46 has no hits.

BO09004.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:57 Download gff for BO09004.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 1..978 17..995 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:56 Download gff for BO09004.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 154..1137 8..995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:25 Download gff for BO09004.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 164..1138 17..993 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:57 Download gff for BO09004.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 154..1137 8..995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:34 Download gff for BO09004.complete
Subject Subject Range Query Range Percent Splice Strand
metl-RB 164..1138 17..993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:34 Download gff for BO09004.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1638042..1638854 181..993 99 <- Minus
3L 1638909..1639072 17..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:25 Download gff for BO09004.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1638042..1638854 181..993 99 <- Minus
arm_3L 1638909..1639072 17..180 100   Minus

BO09004.pep Sequence

Translation from 16 to 1009

> BO09004.pep
MLTTSSSTMLGKYGWQILRRLASKSWEHTRQRKKPSGAGSRVLTDAREVF
EFNAWDHVQWDEEQELAAKAAVAKNSTSKMEAEQKERFQTDAPKFWDSFY
GIHDNRFFKDRHWLFTEFPELAPLAADSAVLQPRSIFELGCGVGNTILPL
LQYSSEPQLKVFGCDFSARAIEILRSQRQFDEKRCEVFVMDATLDHWQVP
FEENSQDIIVMIFVLSAIEPKKMQRVLDNCYRYLRPGGLLLFRDYGRYDL
AQLRFKSGKCMEDNFYVRGDGTMVYFFTEEELRGMMTQAGLQEEQLIVDR
RLQVNRCRGLKMYRVWIQTKFRKPLASFLDH

BO09004.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
metl-PB 325 CG13929-PB 1..325 1..325 1720 100 Plus
metl-PA 302 CG13929-PA 8..302 31..325 1495 95.6 Plus
CG34195-PA 283 CG34195-PA 27..280 74..323 480 39.7 Plus