Clone Sequence Records
BO09005.3prime Sequence
410 bp (409 high quality bases) assembled on 2006-01-10
> BO09005.3prime
ATGGTCTAGAAAGCTTGCGGCCAACGTATGATGGTGTTTCTGGTCGGGAT
AGTTCTCTATGGATTGAATGGAGCGCGATGTGGCGGCAGTAATGGTTGAA
GATACGTCCATAAACCGATATTTCTTGTCATCGCGACAGAGTAAGGGGTA
GCAAATGATGCCGTAGTAGAAGACGAGGCAGAGAACGATTACGGTGAAGA
TGATGGCGATGATGCCGAATGTGGAGATTCCGGGTCGACTATCCAGATAC
TCCTTGGCCGTCTGCGGGGGCTGGGTGGTGGTGGGCGGTTCCGTGGCCTT
GTAACCCCTTCGATTGTTCCGCGCTGCACTCGCACTGAAAACCAAGCAGC
TGGCGCCTAAAAACAGCACACACAACAGGTACGAACTGCGAGACATGTCG
ACTGATAACT
BO09005.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-PA | 381 | CG4455-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 1528 | CG4455-RA | 162..539 | 396..19 | 1890 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16353211..16353550 | 358..19 | 1700 | 100 | Minus |
2L | 23513712 | 2L | 16353095..16353135 | 396..356 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:12:46 has no hits.
BO09005.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:58 Download gff for
BO09005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 16..396 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:20 Download gff for
BO09005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 16..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:53:32 Download gff for
BO09005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..539 | 19..396 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:34:32 Download gff for
BO09005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..539 | 19..396 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:34:32 Download gff for
BO09005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16353213..16353550 | 19..356 | 100 | | Minus |
2L | 16353095..16353134 | 357..396 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:53:32 Download gff for
BO09005.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16353095..16353134 | 357..396 | 100 | -> | Minus |
arm_2L | 16353213..16353550 | 19..356 | 100 | | Minus |
BO09005.5prime Sequence
410 bp (409 high quality bases) assembled on 2006-01-10
> BO09005.5prime
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCGCAAGC
TTTCTAGACC
BO09005.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-PA | 381 | CG4455-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 1528 | CG4455-RA | 162..539 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16353211..16353550 | 55..394 | 1700 | 100 | Plus |
2L | 23513712 | 2L | 16353095..16353135 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 21:43:25 has no hits.
BO09005.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:59 Download gff for
BO09005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:22 Download gff for
BO09005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-PA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:32 Download gff for
BO09005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..539 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:34 Download gff for
BO09005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..539 | 17..394 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:34 Download gff for
BO09005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
2L | 16353213..16353550 | 57..394 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:32 Download gff for
BO09005.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
arm_2L | 16353213..16353550 | 57..394 | 100 | | Plus |
BO09005.complete Sequence
412 bp (412 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631348
> BO09005.complete
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCGCAAGC
TTTCTAGACCAT
BO09005.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 381 | CG4455-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-RA | 1528 | CG4455-RA | 162..539 | 17..394 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16353211..16353550 | 55..394 | 1700 | 100 | Plus |
2L | 23513712 | 2L | 16353095..16353135 | 17..57 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:48 has no hits.
BO09005.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:19 Download gff for
BO09005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 1..381 | 17..397 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:41 Download gff for
BO09005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 160..537 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:31 Download gff for
BO09005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..539 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:19 Download gff for
BO09005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 160..537 | 17..394 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:40 Download gff for
BO09005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4455-RA | 162..539 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:40 Download gff for
BO09005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
2L | 16353213..16353550 | 57..396 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:31 Download gff for
BO09005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16353095..16353134 | 17..56 | 100 | -> | Plus |
arm_2L | 16353213..16353550 | 57..396 | 99 | | Plus |
BO09005.pep Sequence
Translation from 16 to 412
> BO09005.pep
MSRSSYLLCVLFLGASCLVFSASAARNNRRGYKATEPPTTTQPPQTAKEY
LDSRPGISTFGIIAIIFTVIVLCLVFYYGIICYPLLCRDDKKYRFMDVSS
TITAATSRSIQSIENYPDQKHHHTLAASFLDH
BO09005.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4455-PA | 126 | CG4455-PA | 1..126 | 1..126 | 657 | 100 | Plus |