Clone BO09005 Report

Search the DGRC for BO09005

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG4455-RA
Protein status:BO09005.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO09005.3prime Sequence

410 bp (409 high quality bases) assembled on 2006-01-10

> BO09005.3prime
ATGGTCTAGAAAGCTTGCGGCCAACGTATGATGGTGTTTCTGGTCGGGAT
AGTTCTCTATGGATTGAATGGAGCGCGATGTGGCGGCAGTAATGGTTGAA
GATACGTCCATAAACCGATATTTCTTGTCATCGCGACAGAGTAAGGGGTA
GCAAATGATGCCGTAGTAGAAGACGAGGCAGAGAACGATTACGGTGAAGA
TGATGGCGATGATGCCGAATGTGGAGATTCCGGGTCGACTATCCAGATAC
TCCTTGGCCGTCTGCGGGGGCTGGGTGGTGGTGGGCGGTTCCGTGGCCTT
GTAACCCCTTCGATTGTTCCGCGCTGCACTCGCACTGAAAACCAAGCAGC
TGGCGCCTAAAAACAGCACACACAACAGGTACGAACTGCGAGACATGTCG
ACTGATAACT

BO09005.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 381 CG4455-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 1528 CG4455-RA 162..539 396..19 1890 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16353550 358..19 1700 100 Minus
2L 23513712 2L 16353095..16353135 396..356 205 100 Minus
Blast to na_te.dros performed on 2015-02-08 14:12:46 has no hits.

BO09005.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:58 Download gff for BO09005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 16..396 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:20 Download gff for BO09005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 16..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:53:32 Download gff for BO09005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..539 19..396 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:34:32 Download gff for BO09005.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..539 19..396 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:34:32 Download gff for BO09005.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16353213..16353550 19..356 100   Minus
2L 16353095..16353134 357..396 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:53:32 Download gff for BO09005.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16353095..16353134 357..396 100 -> Minus
arm_2L 16353213..16353550 19..356 100   Minus

BO09005.5prime Sequence

410 bp (409 high quality bases) assembled on 2006-01-10

> BO09005.5prime
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCGCAAGC
TTTCTAGACC

BO09005.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 381 CG4455-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 1528 CG4455-RA 162..539 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16353550 55..394 1700 100 Plus
2L 23513712 2L 16353095..16353135 17..57 205 100 Plus
Blast to na_te.dros performed on 2015-02-11 21:43:25 has no hits.

BO09005.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:58:59 Download gff for BO09005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 17..397 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:22 Download gff for BO09005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-PA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 20:27:32 Download gff for BO09005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..539 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:39:34 Download gff for BO09005.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..539 17..394 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:39:34 Download gff for BO09005.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16353095..16353134 17..56 100 -> Plus
2L 16353213..16353550 57..394 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 20:27:32 Download gff for BO09005.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16353095..16353134 17..56 100 -> Plus
arm_2L 16353213..16353550 57..394 100   Plus

BO09005.complete Sequence

412 bp (412 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631348

> BO09005.complete
GAAGTTATCAGTCGACATGTCTCGCAGTTCGTACCTGTTGTGTGTGCTGT
TTTTAGGCGCCAGCTGCTTGGTTTTCAGTGCGAGTGCAGCGCGGAACAAT
CGAAGGGGTTACAAGGCCACGGAACCGCCCACCACCACCCAGCCCCCGCA
GACGGCCAAGGAGTATCTGGATAGTCGACCCGGAATCTCCACATTCGGCA
TCATCGCCATCATCTTCACCGTAATCGTTCTCTGCCTCGTCTTCTACTAC
GGCATCATTTGCTACCCCTTACTCTGTCGCGATGACAAGAAATATCGGTT
TATGGACGTATCTTCAACCATTACTGCCGCCACATCGCGCTCCATTCAAT
CCATAGAGAACTATCCCGACCAGAAACACCATCATACGTTGGCCGCAAGC
TTTCTAGACCAT

BO09005.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 381 CG4455-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-RA 1528 CG4455-RA 162..539 17..394 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16353211..16353550 55..394 1700 100 Plus
2L 23513712 2L 16353095..16353135 17..57 205 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:49:48 has no hits.

BO09005.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:19 Download gff for BO09005.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 1..381 17..397 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:41 Download gff for BO09005.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 160..537 17..394 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:33:31 Download gff for BO09005.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..539 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:19 Download gff for BO09005.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 160..537 17..394 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:40 Download gff for BO09005.complete
Subject Subject Range Query Range Percent Splice Strand
CG4455-RA 162..539 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:40 Download gff for BO09005.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16353095..16353134 17..56 100 -> Plus
2L 16353213..16353550 57..396 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:33:31 Download gff for BO09005.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16353095..16353134 17..56 100 -> Plus
arm_2L 16353213..16353550 57..396 99   Plus

BO09005.pep Sequence

Translation from 16 to 412

> BO09005.pep
MSRSSYLLCVLFLGASCLVFSASAARNNRRGYKATEPPTTTQPPQTAKEY
LDSRPGISTFGIIAIIFTVIVLCLVFYYGIICYPLLCRDDKKYRFMDVSS
TITAATSRSIQSIENYPDQKHHHTLAASFLDH

BO09005.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4455-PA 126 CG4455-PA 1..126 1..126 657 100 Plus