Clone Sequence Records
BO09006.3prime Sequence
914 bp (800 high quality bases) assembled on 2006-01-10
> BO09006.3prime
ATGGTCTAGAAAGCTTGCCATAGAGTTATTGAAGCCGAGGCGGTCAAAAA
CAGAGCCAGATTGATCTCGCTGCCTGCTGTGACCAGCATTCATGCTGTTA
TGGCGCCTTGGCGGAACATATTTCTTCTGTGGCTCCGGTCGCGGCTGTCG
ATGTGGCGGAGCTGGTGGAGCTCTAAGGGGAGCGGAGGTCGCGGTTTTTC
CAAGCCTCCTGTGGACGGGCACCGTGTCCTGTCGGCTAAACAGCTCGTCG
CTGCGCATGCGTATGGTCTTGCCCTTAACAGGACTGAGTCGAGCCTGTGG
TTTCCTTGCAGGCGATGCCTTTAGGTTGTATGTCTTCTTCGTGGCATGAA
GTTTGGATACCATTCCGAGCCTTGATTTAATATTATTCGCAAAACTTTTG
CCCTGCCTATTTTTGTATGCCGATTCGGGAACGATTTCCCGAACCTCCGC
TGTCGAGGCGAACTTAACAATCTTTTCGCCGGCTCCCATATCAAAATCTT
CTCCGCTGGACATGTAATCCTCTTCGTCACTTTCGAAATCGTCCATGCTA
TCATCGTCGTCGTCGCCTTTTTTAAGAGGCACTTTGTGAACTAGCATGAC
CTTTTGCTGCGTTACAGCGGCCACCTTCTTCGCTTTCACAATGGGCGAGT
TCTTGGTGACCCCTCCTCCTCCTCCTCCACCACCAACTGTACGGTGTGTG
TTTTTAAGGATCGATTTGATTTCCCTGGTCGAAGTGAACTCCTCCGGAAG
AGCGCCCTGCTTGCCACCGAGTCGAGCGAAGACCGAATTATTGCTGGAGG
TGGCCGCTGTTTTTGATGCGCCGGCAACGTGCACGCGGACGCTGCTCTCG
CCCGAACTGGAGACAATGCCCTCCTGCGCCTCGTCCTCGGCATGCAGGCG
CGTAAATATGTCCG
BO09006.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-PA | 1368 | CG16812-RA | 470..1365 | 914..19 | 4455 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1721 | CG16812-RA | 612..1507 | 914..19 | 4465 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13223378..13223932 | 914..360 | 2775 | 100 | Minus |
2L | 23513712 | 2L | 13223990..13224331 | 360..19 | 1695 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:02:37 has no hits.
BO09006.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:00 Download gff for
BO09006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 470..1368 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:24 Download gff for
BO09006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 470..1368 | 15..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:48:08 Download gff for
BO09006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 612..1518 | 6..914 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:57 Download gff for
BO09006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 612..1518 | 6..914 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:57 Download gff for
BO09006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13223991..13224342 | 6..359 | 98 | | Minus |
2L | 13223378..13223932 | 360..914 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:48:08 Download gff for
BO09006.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13223378..13223932 | 360..914 | 100 | -> | Minus |
arm_2L | 13223991..13224342 | 6..359 | 98 | | Minus |
BO09006.5prime Sequence
896 bp (771 high quality bases) assembled on 2006-01-10
> BO09006.5prime
GAAGTTATCAGTCGACATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAGGCGACGACGACGATGATA
GCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCGG
BO09006.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-PA | 1368 | CG16812-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
CG16812-PA | 1368 | CG16812-RA | 812..881 | 827..896 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1721 | CG16812-RA | 143..1023 | 17..896 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13223345..13223789 | 453..896 | 2175 | 99.8 | Plus |
2L | 23513712 | 2L | 13222869..13223288 | 33..452 | 2100 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:44:15 has no hits.
BO09006.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:01 Download gff for
BO09006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 1..881 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:25 Download gff for
BO09006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-PA | 1..881 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:39:08 Download gff for
BO09006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1023 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:23:47 Download gff for
BO09006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1023 | 17..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:23:47 Download gff for
BO09006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
2L | 13223345..13223789 | 453..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:39:08 Download gff for
BO09006.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
arm_2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
arm_2L | 13223345..13223789 | 453..896 | 99 | | Plus |
BO09006.complete Sequence
1399 bp (1399 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631349
> BO09006.complete
GAAGTTATCAGTCGACATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAAGGCGACGACGACGATGAT
AGCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCGGAGA
AGATTTTGATATGGGAGCCGGCGAAAAGATTGTTAAGTTCGCCTCGACAG
CGGAGGTTCGGGAAATCGTTCCCGAATCGGCATACAAAAATAGGCAGGGC
AAAAGTTTTGCGAATAATATTAAATCAAGGCTCGGAATGGTATCCAAACT
TCATGCCACGAAGAAGACATACAACCTAAAGGCATCGCCTGCAAGGAAAC
CACAGGCTCGACTCAGTCCTGTTAAGGGCAAGACCATACGCATGCGCAGC
GACGAGCTGTTTAGCCGACAGGACACGGTGCCCGTCCACAGGAGGCTTGG
AAAAACCGCGACCTCCGCTCCCCTTAGAGCTCCACCAGCTCCGCCACATC
GACAGCCGCGACCGGAGCCACAGAAGAAATATGTTCCGCCAAGGCGCCAT
AACAGCATGAATGCTGGTCACAGCAGGCAGCGAGATCAATCTGGCTCTGT
TTTTGACCGCCTCGGCTTCAATAACTCTATGGCAAGCTTTCTAGACCAT
BO09006.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1368 | CG16812-PA | 1..1365 | 17..1381 | 6810 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-RA | 1721 | CG16812-RA | 143..1507 | 17..1381 | 6810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13223345..13223932 | 453..1040 | 2940 | 100 | Plus |
2L | 23513712 | 2L | 13222869..13223288 | 33..452 | 2100 | 100 | Plus |
2L | 23513712 | 2L | 13223990..13224331 | 1040..1381 | 1695 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:42:25 has no hits.
BO09006.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:59 Download gff for
BO09006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 1..1368 | 17..1385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:58 Download gff for
BO09006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 169..1544 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:19 Download gff for
BO09006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1507 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:59 Download gff for
BO09006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 169..1544 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:48 Download gff for
BO09006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16812-RA | 143..1507 | 17..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:48 Download gff for
BO09006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13223991..13224331 | 1041..1383 | 99 | | Plus |
2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
2L | 13223345..13223932 | 453..1040 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:19 Download gff for
BO09006.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13222729..13222747 | 17..35 | 100 | -> | Plus |
arm_2L | 13222872..13223288 | 36..452 | 100 | -> | Plus |
arm_2L | 13223345..13223932 | 453..1040 | 100 | -> | Plus |
arm_2L | 13223991..13224331 | 1041..1383 | 99 | | Plus |
BO09006.pep Sequence
Translation from 16 to 1399
> BO09006.pep
MSKSSAARWVKFFNAAGIPSPAAAGYAHVFVENRIQDDMLLDLNKEYLRE
MGITLMGDIIAILRHSKTVCEQNAREQVLTTEVVQSVVRPVSPKPKAPVA
TPKAKVYPPAKPARRVLPEHEGKYKVTLPSGTTERSKQILAKREKLYSDR
VSSSKKSDIFTRLHAEDEAQEGIVSSSGESSVRVHVAGASKTAATSSNNS
VFARLGGKQGALPEEFTSTREIKSILKNTHRTVGGGGGGGGVTKNSPIVK
AKKVAAVTQQKVMLVHKVPLKKGDDDDDSMDDFESDEEDYMSSGEDFDMG
AGEKIVKFASTAEVREIVPESAYKNRQGKSFANNIKSRLGMVSKLHATKK
TYNLKASPARKPQARLSPVKGKTIRMRSDELFSRQDTVPVHRRLGKTATS
APLRAPPAPPHRQPRPEPQKKYVPPRRHNSMNAGHSRQRDQSGSVFDRLG
FNNSMASFLDH
BO09006.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16812-PA | 455 | CG16812-PA | 1..455 | 1..455 | 2317 | 100 | Plus |