Clone BO09006 Report

Search the DGRC for BO09006

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG16812-RA
Protein status:BO09006.pep: validated full length
Sequenced Size:1399

Clone Sequence Records

BO09006.3prime Sequence

914 bp (800 high quality bases) assembled on 2006-01-10

> BO09006.3prime
ATGGTCTAGAAAGCTTGCCATAGAGTTATTGAAGCCGAGGCGGTCAAAAA
CAGAGCCAGATTGATCTCGCTGCCTGCTGTGACCAGCATTCATGCTGTTA
TGGCGCCTTGGCGGAACATATTTCTTCTGTGGCTCCGGTCGCGGCTGTCG
ATGTGGCGGAGCTGGTGGAGCTCTAAGGGGAGCGGAGGTCGCGGTTTTTC
CAAGCCTCCTGTGGACGGGCACCGTGTCCTGTCGGCTAAACAGCTCGTCG
CTGCGCATGCGTATGGTCTTGCCCTTAACAGGACTGAGTCGAGCCTGTGG
TTTCCTTGCAGGCGATGCCTTTAGGTTGTATGTCTTCTTCGTGGCATGAA
GTTTGGATACCATTCCGAGCCTTGATTTAATATTATTCGCAAAACTTTTG
CCCTGCCTATTTTTGTATGCCGATTCGGGAACGATTTCCCGAACCTCCGC
TGTCGAGGCGAACTTAACAATCTTTTCGCCGGCTCCCATATCAAAATCTT
CTCCGCTGGACATGTAATCCTCTTCGTCACTTTCGAAATCGTCCATGCTA
TCATCGTCGTCGTCGCCTTTTTTAAGAGGCACTTTGTGAACTAGCATGAC
CTTTTGCTGCGTTACAGCGGCCACCTTCTTCGCTTTCACAATGGGCGAGT
TCTTGGTGACCCCTCCTCCTCCTCCTCCACCACCAACTGTACGGTGTGTG
TTTTTAAGGATCGATTTGATTTCCCTGGTCGAAGTGAACTCCTCCGGAAG
AGCGCCCTGCTTGCCACCGAGTCGAGCGAAGACCGAATTATTGCTGGAGG
TGGCCGCTGTTTTTGATGCGCCGGCAACGTGCACGCGGACGCTGCTCTCG
CCCGAACTGGAGACAATGCCCTCCTGCGCCTCGTCCTCGGCATGCAGGCG
CGTAAATATGTCCG

BO09006.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 1368 CG16812-RA 470..1365 914..19 4455 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1721 CG16812-RA 612..1507 914..19 4465 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223378..13223932 914..360 2775 100 Minus
2L 23513712 2L 13223990..13224331 360..19 1695 99.7 Minus
Blast to na_te.dros performed on 2015-02-12 04:02:37 has no hits.

BO09006.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:00 Download gff for BO09006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 470..1368 15..914 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:24 Download gff for BO09006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 470..1368 15..914 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:48:08 Download gff for BO09006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 612..1518 6..914 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:57 Download gff for BO09006.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 612..1518 6..914 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:57 Download gff for BO09006.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13223991..13224342 6..359 98   Minus
2L 13223378..13223932 360..914 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:48:08 Download gff for BO09006.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13223378..13223932 360..914 100 -> Minus
arm_2L 13223991..13224342 6..359 98   Minus

BO09006.5prime Sequence

896 bp (771 high quality bases) assembled on 2006-01-10

> BO09006.5prime
GAAGTTATCAGTCGACATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAGGCGACGACGACGATGATA
GCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCGG

BO09006.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 1368 CG16812-RA 1..815 17..831 4075 100 Plus
CG16812-PA 1368 CG16812-RA 812..881 827..896 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1721 CG16812-RA 143..1023 17..896 4380 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223345..13223789 453..896 2175 99.8 Plus
2L 23513712 2L 13222869..13223288 33..452 2100 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:44:15 has no hits.

BO09006.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:01 Download gff for BO09006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 1..881 17..896 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:25 Download gff for BO09006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-PA 1..881 17..896 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:39:08 Download gff for BO09006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1023 17..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:23:47 Download gff for BO09006.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1023 17..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:23:47 Download gff for BO09006.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13222729..13222747 17..35 100 -> Plus
2L 13222872..13223288 36..452 100 -> Plus
2L 13223345..13223789 453..896 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:39:08 Download gff for BO09006.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13222729..13222747 17..35 100 -> Plus
arm_2L 13222872..13223288 36..452 100 -> Plus
arm_2L 13223345..13223789 453..896 99   Plus

BO09006.complete Sequence

1399 bp (1399 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631349

> BO09006.complete
GAAGTTATCAGTCGACATGTCCAAGTCAAGCGCAGCACGCTGGGTAAAAT
TCTTCAATGCGGCCGGCATCCCATCTCCTGCGGCTGCCGGCTATGCCCAC
GTCTTCGTGGAGAACCGCATCCAGGACGACATGCTGTTGGATCTTAACAA
GGAGTATCTCCGGGAAATGGGCATAACCTTGATGGGCGATATAATCGCCA
TCCTGCGGCACTCAAAGACCGTCTGCGAACAGAATGCCCGGGAACAGGTC
CTCACAACGGAGGTGGTTCAATCAGTTGTCCGACCGGTATCGCCAAAACC
CAAAGCGCCGGTTGCAACTCCAAAAGCAAAGGTTTATCCGCCTGCGAAAC
CTGCAAGACGGGTGCTTCCGGAGCACGAGGGCAAGTACAAGGTGACACTG
CCCTCGGGAACCACCGAGCGCAGCAAACAGATCTTAGCCAAGCGGGAAAA
ATTATACTCCGATCGTGTGAGCAGCTCCAAAAAGTCGGACATATTTACGC
GCCTGCATGCCGAGGACGAGGCGCAGGAGGGCATTGTCTCCAGTTCGGGC
GAGAGCAGCGTCCGCGTGCACGTTGCCGGCGCATCAAAAACAGCGGCCAC
CTCCAGCAATAATTCGGTCTTCGCTCGACTCGGTGGCAAGCAGGGCGCTC
TTCCGGAGGAGTTCACTTCGACCAGGGAAATCAAATCGATCCTTAAAAAC
ACACACCGTACAGTTGGTGGTGGAGGAGGAGGAGGAGGGGTCACCAAGAA
CTCGCCCATTGTGAAAGCGAAGAAGGTGGCCGCTGTAACGCAGCAAAAGG
TCATGCTAGTTCACAAAGTGCCTCTTAAAAAAGGCGACGACGACGATGAT
AGCATGGACGATTTCGAAAGTGACGAAGAGGATTACATGTCCAGCGGAGA
AGATTTTGATATGGGAGCCGGCGAAAAGATTGTTAAGTTCGCCTCGACAG
CGGAGGTTCGGGAAATCGTTCCCGAATCGGCATACAAAAATAGGCAGGGC
AAAAGTTTTGCGAATAATATTAAATCAAGGCTCGGAATGGTATCCAAACT
TCATGCCACGAAGAAGACATACAACCTAAAGGCATCGCCTGCAAGGAAAC
CACAGGCTCGACTCAGTCCTGTTAAGGGCAAGACCATACGCATGCGCAGC
GACGAGCTGTTTAGCCGACAGGACACGGTGCCCGTCCACAGGAGGCTTGG
AAAAACCGCGACCTCCGCTCCCCTTAGAGCTCCACCAGCTCCGCCACATC
GACAGCCGCGACCGGAGCCACAGAAGAAATATGTTCCGCCAAGGCGCCAT
AACAGCATGAATGCTGGTCACAGCAGGCAGCGAGATCAATCTGGCTCTGT
TTTTGACCGCCTCGGCTTCAATAACTCTATGGCAAGCTTTCTAGACCAT

BO09006.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1368 CG16812-PA 1..1365 17..1381 6810 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-RA 1721 CG16812-RA 143..1507 17..1381 6810 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13223345..13223932 453..1040 2940 100 Plus
2L 23513712 2L 13222869..13223288 33..452 2100 100 Plus
2L 23513712 2L 13223990..13224331 1040..1381 1695 99.7 Plus
Blast to na_te.dros performed on 2014-11-27 19:42:25 has no hits.

BO09006.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:59 Download gff for BO09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 1..1368 17..1385 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:58 Download gff for BO09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 169..1544 17..1394 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:19 Download gff for BO09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1507 17..1383 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:59 Download gff for BO09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 169..1544 17..1394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:48 Download gff for BO09006.complete
Subject Subject Range Query Range Percent Splice Strand
CG16812-RA 143..1507 17..1383 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:48 Download gff for BO09006.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13223991..13224331 1041..1383 99   Plus
2L 13222729..13222747 17..35 100 -> Plus
2L 13222872..13223288 36..452 100 -> Plus
2L 13223345..13223932 453..1040 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:19 Download gff for BO09006.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13222729..13222747 17..35 100 -> Plus
arm_2L 13222872..13223288 36..452 100 -> Plus
arm_2L 13223345..13223932 453..1040 100 -> Plus
arm_2L 13223991..13224331 1041..1383 99   Plus

BO09006.pep Sequence

Translation from 16 to 1399

> BO09006.pep
MSKSSAARWVKFFNAAGIPSPAAAGYAHVFVENRIQDDMLLDLNKEYLRE
MGITLMGDIIAILRHSKTVCEQNAREQVLTTEVVQSVVRPVSPKPKAPVA
TPKAKVYPPAKPARRVLPEHEGKYKVTLPSGTTERSKQILAKREKLYSDR
VSSSKKSDIFTRLHAEDEAQEGIVSSSGESSVRVHVAGASKTAATSSNNS
VFARLGGKQGALPEEFTSTREIKSILKNTHRTVGGGGGGGGVTKNSPIVK
AKKVAAVTQQKVMLVHKVPLKKGDDDDDSMDDFESDEEDYMSSGEDFDMG
AGEKIVKFASTAEVREIVPESAYKNRQGKSFANNIKSRLGMVSKLHATKK
TYNLKASPARKPQARLSPVKGKTIRMRSDELFSRQDTVPVHRRLGKTATS
APLRAPPAPPHRQPRPEPQKKYVPPRRHNSMNAGHSRQRDQSGSVFDRLG
FNNSMASFLDH

BO09006.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG16812-PA 455 CG16812-PA 1..455 1..455 2317 100 Plus