Clone Sequence Records
BO09011.3prime Sequence
788 bp (787 high quality bases) assembled on 2006-01-10
> BO09011.3prime
ATGGTCTAGAAAGCTTGCCATGTTCTGTATGTCATGTAAGGTGGCCTCCA
TTTCCTCCTGCAGCAGTTTGTTCTTGCCCCGCACGTTGAGCAGGTCATCT
TCGAGCCTGTCGACTTCCTTCTGCAATTTCTGAACGGAGCGTTCAGCGAA
CTCAGCACGAGCCTCAGCCTCTTTCAGAGAATGATCCAATACTTTGATTT
GCGTCTCAAAGGTCTCCTCTTTTTGTGTGGCCTTCTCCTCAGAGACTTCC
AGGGACTTCAGGTTGTTGCCAACCACGCGCAGCTCCTCCTCAAGCTCCAC
AATTTTGCTTTCGCTGAGCTCGACCTTCTCCTCGGAACGCTCCAGATCCT
GTTCCATGAGCACGAGTTTTCTGGCCACCTCTTCGTATTTCTTATCAGCT
TCTTCTGCAATTAATTTTGCTTGCGCTAACTGGTTCTCCAAGAGAGCTAC
TTTGTCATCTTCCATATTTGTGCGATTCTCAAGCGCTTTTCGTATCCGTT
CGCTCTCATCGGCGGCCTGAGAGGCTTCCGACAGCTTGGCTGTGGCGGAG
CCCAGACGCTCCTCAGAGCGCTCCAAGTCTTCTTCGAGCAACTGGATGCG
ACGGTTCAGAGCGGCAACCTCGGATTCGGCTTCTTCGCGGCGCACCACCT
CCAACTGCAGCCGCTTGTGGAACTCCTCGCACTCGTCTTTATACTTCTCC
ATCTCCTCTTTGGTCTGGCGCATCTTCTTCTTCAGCACGTCCAAGAGAGT
GCCTTGTGGAATGCTGGTCGTCATGTCGACTGATAACT
BO09011.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4898-PA | 759 | Tm1-RA | 1..756 | 774..19 | 3780 | 100 | Minus |
| CG4898-PL | 855 | Tm1-RL | 241..852 | 630..19 | 3060 | 100 | Minus |
| CG4898-PB | 1020 | Tm1-RB | 259..536 | 774..497 | 1390 | 100 | Minus |
| CG4898-PK | 1557 | Tm1-RK | 241..374 | 630..497 | 670 | 100 | Minus |
| CG4898-PJ | 858 | Tm1-RJ | 241..374 | 630..497 | 670 | 100 | Minus |
| CG4898-PD | 858 | Tm1-RD | 241..374 | 630..497 | 670 | 100 | Minus |
| CG4898-PE | 2136 | Tm1-RE | 1519..1652 | 630..497 | 670 | 100 | Minus |
| CG4898-PG | 858 | Tm1-RG | 241..374 | 630..497 | 670 | 100 | Minus |
| CG4898-PF | 1506 | Tm1-RF | 241..374 | 630..497 | 670 | 100 | Minus |
| CG4898-PI | 1326 | Tm1-RI | 844..977 | 630..497 | 670 | 100 | Minus |
| CG4898-PC | 1326 | Tm1-RC | 844..977 | 630..497 | 670 | 100 | Minus |
| CG4898-PH | 2037 | Tm1-RH | 1555..1688 | 630..497 | 670 | 100 | Minus |
| CG4898-PB | 1020 | Tm1-RB | 726..805 | 307..228 | 400 | 100 | Minus |
| CG4898-PK | 1557 | Tm1-RK | 564..643 | 307..228 | 400 | 100 | Minus |
| CG4898-PJ | 858 | Tm1-RJ | 564..643 | 307..228 | 400 | 100 | Minus |
| CG4898-PD | 858 | Tm1-RD | 564..643 | 307..228 | 400 | 100 | Minus |
| CG4898-PE | 2136 | Tm1-RE | 1842..1921 | 307..228 | 400 | 100 | Minus |
| CG4898-PG | 858 | Tm1-RG | 564..643 | 307..228 | 400 | 100 | Minus |
| CG4898-PF | 1506 | Tm1-RF | 564..643 | 307..228 | 400 | 100 | Minus |
| CG4898-PB | 1020 | Tm1-RB | 862..941 | 171..92 | 375 | 98.7 | Minus |
| CG4898-PK | 1557 | Tm1-RK | 700..779 | 171..92 | 375 | 98.7 | Minus |
| CG4898-PJ | 858 | Tm1-RJ | 700..779 | 171..92 | 375 | 98.7 | Minus |
| CG4898-PD | 858 | Tm1-RD | 700..779 | 171..92 | 375 | 98.7 | Minus |
| CG4898-PE | 2136 | Tm1-RE | 1978..2057 | 171..92 | 375 | 98.7 | Minus |
| CG4898-PG | 858 | Tm1-RG | 700..779 | 171..92 | 375 | 98.7 | Minus |
| CG4898-PF | 1506 | Tm1-RF | 700..773 | 171..98 | 370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1194 | 774..19 | 3780 | 100 | Minus |
| Tm1-RL | 2194 | CG4898-RL | 331..942 | 630..19 | 3060 | 100 | Minus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 774..98 | 2965 | 96 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 774..630 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 15295113..15295247 | 630..496 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 15295426..15295546 | 497..377 | 605 | 100 | Minus |
| 3R | 32079331 | 3R | 15303639..15303720 | 100..19 | 410 | 100 | Minus |
| 3R | 32079331 | 3R | 15300745..15300823 | 309..231 | 395 | 100 | Minus |
| 3R | 32079331 | 3R | 15300104..15300180 | 384..308 | 370 | 98.7 | Minus |
| 3R | 32079331 | 3R | 15303151..15303222 | 170..99 | 360 | 100 | Minus |
| 3R | 32079331 | 3R | 15301622..15301687 | 233..168 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:12:36 has no hits.
BO09011.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:09 Download gff for
BO09011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:36 Download gff for
BO09011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4898-PA | 1..759 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:53:30 Download gff for
BO09011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:34:30 Download gff for
BO09011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 15..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:34:30 Download gff for
BO09011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15291382..15291525 | 631..774 | 100 | -> | Minus |
| 3R | 15295113..15295246 | 497..630 | 100 | -> | Minus |
| 3R | 15295427..15295544 | 379..496 | 100 | -> | Minus |
| 3R | 15300110..15300180 | 308..378 | 100 | -> | Minus |
| 3R | 15300747..15300822 | 232..307 | 100 | -> | Minus |
| 3R | 15301624..15301686 | 169..231 | 100 | -> | Minus |
| 3R | 15303153..15303222 | 99..168 | 100 | -> | Minus |
| 3R | 15303641..15303723 | 15..98 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:53:30 Download gff for
BO09011.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11128875..11128944 | 99..168 | 100 | -> | Minus |
| arm_3R | 11129363..11129445 | 15..98 | 97 | | Minus |
| arm_3R | 11117104..11117247 | 631..774 | 100 | -> | Minus |
| arm_3R | 11120835..11120968 | 497..630 | 100 | -> | Minus |
| arm_3R | 11121149..11121266 | 379..496 | 100 | -> | Minus |
| arm_3R | 11125832..11125902 | 308..378 | 100 | -> | Minus |
| arm_3R | 11126469..11126544 | 232..307 | 100 | -> | Minus |
| arm_3R | 11127346..11127408 | 169..231 | 100 | -> | Minus |
BO09011.5prime Sequence
788 bp (787 high quality bases) assembled on 2006-01-10
> BO09011.5prime
GAAGTTATCAGTCGACATGACGACCAGCATTCCACAAGGCACTCTCTTGG
ACGTGCTGAAGAAGAAGATGCGCCAGACCAAAGAGGAGATGGAGAAGTAT
AAAGACGAGTGCGAGGAGTTCCACAAGCGGCTGCAGTTGGAGGTGGTGCG
CCGCGAAGAAGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGT
TGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACA
GCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACG
AAAAGCGCTTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCT
TGGAGAACCAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAG
AAATACGAAGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGA
GCGTTCCGAGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTG
AGGAGGAGCTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCT
GAGGAGAAGGCCACACAAAAAGAGGAGACCTTTGAGACGCAAATCAAAGT
ATTGGATCATTCTCTGAAAGAGGCTGAGGCTCGTGCTGAGTTCGCTGAAC
GCTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGATGACCTG
CTCAACGTGCGGGGCAAGAACAAACTGCTGCAGGAGGAAATGGAGGCCAC
CTTACATGACATACAGAACATGGCAAGCTTTCTAGACC
BO09011.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4898-PA | 759 | Tm1-RA | 1..756 | 17..772 | 3780 | 100 | Plus |
| CG4898-PL | 855 | Tm1-RL | 241..852 | 161..772 | 3060 | 100 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 259..536 | 17..294 | 1390 | 100 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PD | 858 | Tm1-RD | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1519..1652 | 161..294 | 670 | 100 | Plus |
| CG4898-PG | 858 | Tm1-RG | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 241..374 | 161..294 | 670 | 100 | Plus |
| CG4898-PI | 1326 | Tm1-RI | 844..977 | 161..294 | 670 | 100 | Plus |
| CG4898-PC | 1326 | Tm1-RC | 844..977 | 161..294 | 670 | 100 | Plus |
| CG4898-PH | 2037 | Tm1-RH | 1555..1688 | 161..294 | 670 | 100 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 726..805 | 484..563 | 400 | 100 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PD | 858 | Tm1-RD | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1842..1921 | 484..563 | 400 | 100 | Plus |
| CG4898-PG | 858 | Tm1-RG | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 564..643 | 484..563 | 400 | 100 | Plus |
| CG4898-PB | 1020 | Tm1-RB | 862..941 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PK | 1557 | Tm1-RK | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PJ | 858 | Tm1-RJ | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PD | 858 | Tm1-RD | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PE | 2136 | Tm1-RE | 1978..2057 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PG | 858 | Tm1-RG | 700..779 | 620..699 | 375 | 98.7 | Plus |
| CG4898-PF | 1506 | Tm1-RF | 700..773 | 620..693 | 370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1194 | 17..772 | 3780 | 100 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 331..942 | 161..772 | 3060 | 100 | Plus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 17..693 | 2965 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 17..161 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 15295113..15295247 | 161..295 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 294..414 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15303639..15303720 | 691..772 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 482..560 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 407..483 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 621..692 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301622..15301687 | 558..623 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:27:01 has no hits.
BO09011.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:10 Download gff for
BO09011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:38 Download gff for
BO09011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4898-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:24:46 Download gff for
BO09011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:01 Download gff for
BO09011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1197 | 17..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:01 Download gff for
BO09011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15291382..15291525 | 17..160 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 161..294 | 100 | -> | Plus |
| 3R | 15295427..15295544 | 295..412 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 413..483 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 484..559 | 100 | -> | Plus |
| 3R | 15301624..15301686 | 560..622 | 100 | -> | Plus |
| 3R | 15303153..15303222 | 623..692 | 100 | -> | Plus |
| 3R | 15303641..15303723 | 693..776 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:24:46 Download gff for
BO09011.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11117104..11117247 | 17..160 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 161..294 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 295..412 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 413..483 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 484..559 | 100 | -> | Plus |
| arm_3R | 11127346..11127408 | 560..622 | 100 | -> | Plus |
| arm_3R | 11128875..11128944 | 623..692 | 100 | -> | Plus |
| arm_3R | 11129363..11129445 | 693..776 | 97 | | Plus |
BO09011.complete Sequence
790 bp (790 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631351
> BO09011.complete
GAAGTTATCAGTCGACATGACGACCAGCATTCCACAAGGCACTCTCTTGG
ACGTGCTGAAGAAGAAGATGCGCCAGACCAAAGAGGAGATGGAGAAGTAT
AAAGACGAGTGCGAGGAGTTCCACAAGCGGCTGCAGTTGGAGGTGGTGCG
CCGCGAAGAAGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGT
TGCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACA
GCCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGGATACG
AAAAGCGCTTGAGAATCGCACAAATATGGAAGATGACAAAGTAGCTCTCT
TGGAGAACCAGTTAGCGCAAGCAAAATTAATTGCAGAAGAAGCTGATAAG
AAATACGAAGAGGTGGCCAGAAAACTCGTGCTCATGGAACAGGATCTGGA
GCGTTCCGAGGAGAAGGTCGAGCTCAGCGAAAGCAAAATTGTGGAGCTTG
AGGAGGAGCTGCGCGTGGTTGGCAACAACCTGAAGTCCCTGGAAGTCTCT
GAGGAGAAGGCCACACAAAAAGAGGAGACCTTTGAGACGCAAATCAAAGT
ATTGGATCATTCTCTGAAAGAGGCTGAGGCTCGTGCTGAGTTCGCTGAAC
GCTCCGTTCAGAAATTGCAGAAGGAAGTCGACAGGCTCGAAGATGACCTG
CTCAACGTGCGGGGCAAGAACAAACTGCTGCAGGAGGAAATGGAGGCCAC
CTTACATGACATACAGAACATGGCAAGCTTTCTAGACCAT
BO09011.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 759 | CG4898-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
| Tm1-RL | 855 | CG4898-PL | 241..852 | 161..772 | 3060 | 100 | Plus |
| Tm1-RQ | 753 | CG4898-PQ | 1..677 | 17..693 | 2950 | 95.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RA | 2003 | CG4898-RA | 439..1194 | 17..772 | 3780 | 100 | Plus |
| Tm1-RL | 2194 | CG4898-RL | 331..942 | 161..772 | 3060 | 100 | Plus |
| Tm1-RQ | 1318 | CG4898-RQ | 437..1113 | 17..693 | 2950 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15291382..15291526 | 17..161 | 725 | 100 | Plus |
| 3R | 32079331 | 3R | 15295113..15295247 | 161..295 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 15295426..15295546 | 294..414 | 605 | 100 | Plus |
| 3R | 32079331 | 3R | 15303639..15303720 | 691..772 | 410 | 100 | Plus |
| 3R | 32079331 | 3R | 15300745..15300823 | 482..560 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 15300104..15300180 | 407..483 | 370 | 98.7 | Plus |
| 3R | 32079331 | 3R | 15303151..15303222 | 621..692 | 360 | 100 | Plus |
| 3R | 32079331 | 3R | 15301622..15301687 | 558..623 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:39:19 has no hits.
BO09011.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:28 Download gff for
BO09011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:36 Download gff for
BO09011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 437..1192 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:10 Download gff for
BO09011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1194 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:28 Download gff for
BO09011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 437..1195 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:21 Download gff for
BO09011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RA | 439..1194 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:21 Download gff for
BO09011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15303153..15303222 | 623..692 | 100 | -> | Plus |
| 3R | 15303641..15303720 | 693..774 | 97 | | Plus |
| 3R | 15295427..15295544 | 295..412 | 100 | -> | Plus |
| 3R | 15300110..15300180 | 413..483 | 100 | -> | Plus |
| 3R | 15300747..15300822 | 484..559 | 100 | -> | Plus |
| 3R | 15301624..15301686 | 560..622 | 100 | -> | Plus |
| 3R | 15291382..15291525 | 17..160 | 100 | -> | Plus |
| 3R | 15295113..15295246 | 161..294 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:10 Download gff for
BO09011.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11128875..11128944 | 623..692 | 100 | -> | Plus |
| arm_3R | 11129363..11129442 | 693..774 | 97 | | Plus |
| arm_3R | 11117104..11117247 | 17..160 | 100 | -> | Plus |
| arm_3R | 11120835..11120968 | 161..294 | 100 | -> | Plus |
| arm_3R | 11121149..11121266 | 295..412 | 100 | -> | Plus |
| arm_3R | 11125832..11125902 | 413..483 | 100 | -> | Plus |
| arm_3R | 11126469..11126544 | 484..559 | 100 | -> | Plus |
| arm_3R | 11127346..11127408 | 560..622 | 100 | -> | Plus |
BO09011.pep Sequence
Translation from 16 to 790
> BO09011.pep
MTTSIPQGTLLDVLKKKMRQTKEEMEKYKDECEEFHKRLQLEVVRREEAE
SEVAALNRRIQLLEEDLERSEERLGSATAKLSEASQAADESERIRKALEN
RTNMEDDKVALLENQLAQAKLIAEEADKKYEEVARKLVLMEQDLERSEEK
VELSESKIVELEEELRVVGNNLKSLEVSEEKATQKEETFETQIKVLDHSL
KEAEARAEFAERSVQKLQKEVDRLEDDLLNVRGKNKLLQEEMEATLHDIQ
NMASFLDH
BO09011.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-PA | 252 | CG4898-PA | 1..252 | 1..252 | 1217 | 100 | Plus |
| Tm1-PQ | 250 | CG4898-PQ | 1..243 | 1..243 | 1056 | 90.5 | Plus |
| Tm1-PR | 250 | CG4898-PR | 1..243 | 1..243 | 1017 | 86.4 | Plus |
| Tm1-PL | 284 | CG4898-PL | 50..284 | 11..252 | 991 | 87.6 | Plus |
| Tm1-PN | 285 | CG4898-PN | 50..281 | 11..249 | 826 | 74.9 | Plus |
