Clone Sequence Records
BO09014.3prime Sequence
716 bp (715 high quality bases) assembled on 2006-01-10
> BO09014.3prime
ATGGTCTAGAAAGCTTGCGCAGAACTTGAGCTTCATCTTGCTGGTCTTGG
GCACATTACGGATGGTGAGGGAGATGCGCGGCGATCGGCGTACTAAGTGA
TCCCCGATCTTGTAGGTATTCTCGCACAGATCGTAGTTGGAGATGCGATC
GCAGAGCACATCCTCGCTAGTCTCGGAGATGGCGTGCAGATAGTCGGTGT
ACAGCGTGTCCTTGAGGATGAGCAGGCTGCGCGGTTCCAGCAGCAGCTTG
AAGAGCACTTCACGGGTCGTCTGATCTCCAGCTTCTGTTTCAGTTGTGGT
GTCCTCACGCTTGACAAACTCCAGCACGGTATGAGCACCCGTGGAAATGG
TGGAGATGATGGGATGGAACAGTGGTCCATCTGTGTGCGGCAGAATTCCC
TGACCCGGCAGATACTCGTTGACCAAAACATGGTTAGCGTTCTGCGACTC
GAACACCCCCAGATTGTTGACCTTGTCCACATAGGTCTGCAGCCACTCCG
GAATCTCCTCGGCAATCATTCCGTTGGGATGCGGCACACCGCCGTAGTTG
ACCAGCCGGCGGTTCAGCAGCTGCGTCCATCGAGGCTTCGGAGTGCGCTC
GATGTGGCTCAGGATGCGCTGCTCCTCCTCGGAAGTGATGAAGTTCGGAA
TGTACATGACAGTCGGTGGGCACTTTCGCACTTCAAAGCCCGTGAAATCC
ATGTCGACTGATAACT
BO09014.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-PA | 687 | CG6144-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
CG6144-PB | 687 | CG6144-RB | 1..684 | 702..19 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 1553 | CG6144-RC | 113..797 | 703..19 | 3425 | 100 | Minus |
CG6144-RB | 1705 | CG6144-RB | 265..949 | 703..19 | 3425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:22:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10489050..10489705 | 674..19 | 3280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:22:27 has no hits.
BO09014.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:15 Download gff for
BO09014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:44 Download gff for
BO09014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:59:54 Download gff for
BO09014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 11..703 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:07:49 Download gff for
BO09014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 11..703 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:07:49 Download gff for
BO09014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10488958..10488988 | 673..703 | 100 | -> | Minus |
2L | 10489052..10489711 | 11..672 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:59:54 Download gff for
BO09014.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10488958..10488988 | 673..703 | 100 | -> | Minus |
arm_2L | 10489052..10489711 | 11..672 | 99 | | Minus |
BO09014.5prime Sequence
716 bp (715 high quality bases) assembled on 2006-01-10
> BO09014.5prime
GAAGTTATCAGTCGACATGGATTTCACGGGCTTTGAAGTGCGAAAGTGCC
CACCGACTGTCATGTACATTCCGAACTTCATCACTTCCGAGGAGGAGCAG
CGCATCCTGAGCCACATCGAGCGCACTCCGAAGCCTCGATGGACGCAGCT
GCTGAACCGCCGGCTGGTCAACTACGGCGGTGTGCCGCATCCCAACGGAA
TGATTGCCGAGGAGATTCCGGAGTGGCTGCAGACCTATGTGGACAAGGTC
AACAATCTGGGGGTGTTCGAGTCGCAGAACGCTAACCATGTTTTGGTCAA
CGAGTATCTGCCGGGTCAGGGAATTCTGCCGCACACAGATGGACCACTGT
TCCATCCCATCATCTCCACCATTTCCACGGGTGCTCATACCGTGCTGGAG
TTTGTCAAGCGTGAGGACACCACAACTGAAACAGAAGCTGGAGATCAGAC
GACCCGTGAAGTGCTCTTCAAGCTGCTGCTGGAACCGCGCAGCCTGCTCA
TCCTCAAGGACACGCTGTACACCGACTATCTGCACGCCATCTCCGAGACT
AGCGAGGATGTGCTCTGCGATCGCATCTCCAACTACGATCTGTGCGAGAA
TACCTACAAGATCGGGGATCACTTAGTACGCCGATCGCCGCGCATCTCCC
TCACCATCCGTAATGTGCCCAAGACCAGCAAGATGAAGCTCAAGTTCTGC
GCAAGCTTTCTAGACC
BO09014.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-PA | 687 | CG6144-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
CG6144-PB | 687 | CG6144-RB | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 1553 | CG6144-RC | 113..797 | 16..700 | 3425 | 100 | Plus |
CG6144-RB | 1705 | CG6144-RB | 265..949 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10489050..10489705 | 45..700 | 3280 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:43:15 has no hits.
BO09014.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:16 Download gff for
BO09014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:46 Download gff for
BO09014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-PB | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:17 Download gff for
BO09014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 16..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:29 Download gff for
BO09014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 265..955 | 16..708 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:29 Download gff for
BO09014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10488958..10488988 | 16..46 | 100 | -> | Plus |
2L | 10489052..10489711 | 47..708 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:17 Download gff for
BO09014.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10488958..10488988 | 16..46 | 100 | -> | Plus |
arm_2L | 10489052..10489711 | 47..708 | 99 | | Plus |
BO09014.complete Sequence
718 bp (718 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631352
> BO09014.complete
GAAGTTATCAGTCGACATGGATTTCACGGGCTTTGAAGTGCGAAAGTGCC
CACCGACTGTCATGTACATTCCGAACTTCATCACTTCCGAGGAGGAGCAG
CGCATCCTGAGCCACATCGAGCGCACTCCGAAGCCTCGATGGACGCAGCT
GCTGAACCGCCGGCTGGTCAACTACGGCGGTGTGCCGCATCCCAACGGAA
TGATTGCCGAGGAGATTCCGGAGTGGCTGCAGACCTATGTGGACAAGGTC
AACAATCTGGGGGTGTTCGAGTCGCAGAACGCTAACCATGTTTTGGTCAA
CGAGTATCTGCCGGGTCAGGGAATTCTGCCGCACACAGATGGACCACTGT
TCCATCCCATCATCTCCACCATTTCCACGGGTGCTCATACCGTGCTGGAG
TTTGTCAAGCGTGAGGACACCACAACTGAAACAGAAGCTGGAGATCAGAC
GACCCGTGAAGTGCTCTTCAAGCTGCTGCTGGAACCGCGCAGCCTGCTCA
TCCTCAAGGACACGCTGTACACCGACTATCTGCACGCCATCTCCGAGACT
AGCGAGGATGTGCTCTGCGATCGCATCTCCAACTACGATCTGTGCGAGAA
TACCTACAAGATCGGGGATCACTTAGTACGCCGATCGCCGCGCATCTCCC
TCACCATCCGTAATGTGCCCAAGACCAGCAAGATGAAGCTCAAGTTCTGC
GCAAGCTTTCTAGACCAT
BO09014.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 687 | CG6144-PC | 1..684 | 17..700 | 3420 | 100 | Plus |
CG6144-RB | 687 | CG6144-PB | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-RC | 1553 | CG6144-RC | 113..797 | 16..700 | 3425 | 100 | Plus |
CG6144-RB | 1705 | CG6144-RB | 265..949 | 16..700 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10489050..10489705 | 45..700 | 3280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:07:08 has no hits.
BO09014.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:04:20 Download gff for
BO09014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:23:27 Download gff for
BO09014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 214..904 | 16..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:51 Download gff for
BO09014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 266..949 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:04:20 Download gff for
BO09014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 214..904 | 16..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:44 Download gff for
BO09014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6144-RB | 266..949 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:44 Download gff for
BO09014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10488959..10488988 | 17..46 | 100 | -> | Plus |
2L | 10489052..10489705 | 47..702 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:51 Download gff for
BO09014.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10488959..10488988 | 17..46 | 100 | -> | Plus |
arm_2L | 10489052..10489705 | 47..702 | 99 | | Plus |
BO09014.pep Sequence
Translation from 16 to 718
> BO09014.pep
MDFTGFEVRKCPPTVMYIPNFITSEEEQRILSHIERTPKPRWTQLLNRRL
VNYGGVPHPNGMIAEEIPEWLQTYVDKVNNLGVFESQNANHVLVNEYLPG
QGILPHTDGPLFHPIISTISTGAHTVLEFVKREDTTTETEAGDQTTREVL
FKLLLEPRSLLILKDTLYTDYLHAISETSEDVLCDRISNYDLCENTYKIG
DHLVRRSPRISLTIRNVPKTSKMKLKFCASFLDH
BO09014.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6144-PC | 228 | CG6144-PC | 1..228 | 1..228 | 1207 | 100 | Plus |
CG6144-PB | 228 | CG6144-PB | 1..228 | 1..228 | 1207 | 100 | Plus |