Clone Sequence Records
BO09015.3prime Sequence
959 bp (817 high quality bases) assembled on 2006-01-10
> BO09015.3prime
ATGGTCTAGAAAGCTTGCCAGCTTCTCGGAGAACTCGTAGGGTCGACCCC
CATTTTCGACCTTGTAGTCCGGCTCGAAGCCGGGATTCACGTGCTGTCCC
TGGTTCTGCAGAGCGCTTGCCGCCACCTCGGCGTGACTGCGGCTCCTACT
TATCTGCGTGGAGTTCCGCATGCCGTAACAGAAGTAAATCACGTAGCCGA
TCACGATCCAGATGAGGAAGCGGATCCATGTGTTCAGGTCCAGCTGAAAC
ATCAGGTACAAATTCGCAAAGACGCTGAGGCACGGCACGAACGGCACTAG
CGGCACCTTGAACGTGAGCTCAATGGTCGACACCGGCTGCATGCCGATCA
CAACGCAGATGAGGATTAGCACAGCGCCCACCAAGCTGAGCGCCACAATT
CCGCCGGTGCTGTCCAGGTCGAAGACTTTCTGGAGGGAGCACCAGACCAG
GCAAAAGATGGCGAACACCACAATGCCGACTTTGGTGATGGACGAGGTCA
TAGAATTGGGCTCCCGGAAGGAGTTGCCGTTGAAGAATTGCCGGAAAACA
TTCGGTGCCTTGACAGACACCAGCTTGGTCATCTCCTCGTCCTGGTAGCG
CAGCACTAGCACGCAAATTGCCACGATGGTGTATGCTAACAGGGTTCCGA
TGGACATCATGTCCACAAGCTGGTCCAGGTTAAAGAGCATGGCCATTATG
GACGCAAAGATTCCAGACACAATGGTGGCCAGGAGCGGGGTCTTCGTGTA
GCTGTTCACTGTGGACAGCCTCTTGAACAATATGCCGTCCTTGCCCATGG
CGTAGAGGATGCGAGGCAGTGGGAACATGGCGCCCAACAAACTAGTGCAG
AGCGCAAACACAGCACCTATGGTCACAATCCACTTGATGGTGTACCACTC
GACGGAATCGAAAGCGTGAGGAAAAGGTGCATCCTTGTCCTGGTTGTAGT
AGGGCAGCA
BO09015.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11128-PA | 1815 | slif-RA | 872..1812 | 959..19 | 4680 | 99.8 | Minus |
| CG11128-PC | 1815 | slif-RC | 872..1812 | 959..19 | 4680 | 99.8 | Minus |
| CG11128-PB | 1815 | slif-RB | 872..1812 | 959..19 | 4680 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 2523 | CG11128-RB | 1007..1947 | 959..19 | 4690 | 99.9 | Minus |
| slif-RC | 2653 | CG11128-RC | 1137..2077 | 959..19 | 4690 | 99.9 | Minus |
| slif-RA | 2744 | CG11128-RA | 1228..2168 | 959..19 | 4690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22892563..22893245 | 701..19 | 3415 | 100 | Minus |
| 3L | 28110227 | 3L | 22892238..22892495 | 959..702 | 1275 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:09:11 has no hits.
BO09015.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:17 Download gff for
BO09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-PB | 873..1815 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:47 Download gff for
BO09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11128-PB | 873..1815 | 15..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:58:19 Download gff for
BO09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 1229..2172 | 14..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:10 Download gff for
BO09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 1229..2172 | 14..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:10 Download gff for
BO09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22892239..22892495 | 702..958 | 99 | -> | Minus |
| 3L | 22892563..22893249 | 14..701 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:58:19 Download gff for
BO09015.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22885339..22885595 | 702..958 | 99 | -> | Minus |
| arm_3L | 22885663..22886349 | 14..701 | 99 | | Minus |
BO09015.5prime Sequence
937 bp (913 high quality bases) assembled on 2006-01-10
> BO09015.5prime
GAAGTTATCAGTCGACATGACCAATCTCTGGAAGGCATTGACGCGTCGCA
AGACGGAGGACGTGAACGAAGGCGAGTCCCAGTTGGCGCGAGTGCTGAAC
CTTTTCGATCTGACGGCTTTGGGAGTGGGCAGTACTTTGGGACTGGGAGT
CTATGTGCTGGCTGGTCAGGTGGCCTTCAATATTGCCGGGCCAGCGGTGA
CCATTTCCTTCCTGATTGCGGCCATCGCGTCTGCCTTCGCGGGGATCTGC
TATGCGGAGTTCGCCGCGCGAGTGCCCAAGGCGGGAAGCGCCTACGTATA
CAGCTACGTGACCATTGGAGAGTTCGTCGCCTTCACCATAGGATGGAATC
TCATTCTGGAGTATGTGATTGGCACAGCCTCAGTTGCGCGCGGCCTGAGC
GGATATTTCGACTCTCTGATCAACAACAACATGTCGAAGGCATTGAATGA
GTCGATGCACATCGACGTCGACTTTCTGGGTGACTACCCCGATTTTTTGT
CCTTCGGCATGGTGCTGCTCCTGGCGGCCATCCTCGCCTTTGGCGCCAAA
GAGTCAAGCTTCCTGAACAACATCTTCACCACAGTCAATCTGGTTACGAT
CGCTATCGTCCTGGTGGCTGGCGCCATGAACGCCAACGTCGACAATTGGC
GCATCCCGAAGAAAGATGTTCCCGAGGGCTTTGGCACGGGAGGCTTCATG
CCGTTCGGCATTGCTGGAGTGATGGCCGGAGCTGCCAAATGCTTCTACGG
CTTCGTGGGGTTCGACTGCATCGCCACCACGGGCGAGGAGGCCATCAACC
CAAAGCGCAACATTCCGCTCTCTATCGTGGTGTCGCTGATCATAATCTTC
CTATCCCTACTTGGAGTGTCCACGGTGCTGACTATGATGCTGCCCTACTA
CAAACAGGACAAGGGATGCACTTTTCCTCACGCTTTT
BO09015.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11128-PA | 1815 | slif-RA | 1..840 | 17..856 | 4200 | 100 | Plus |
| CG11128-PC | 1815 | slif-RC | 1..840 | 17..856 | 4200 | 100 | Plus |
| CG11128-PB | 1815 | slif-RB | 1..840 | 17..856 | 4200 | 100 | Plus |
| CG11128-PA | 1815 | slif-RA | 845..898 | 861..914 | 270 | 100 | Plus |
| CG11128-PC | 1815 | slif-RC | 845..898 | 861..914 | 270 | 100 | Plus |
| CG11128-PB | 1815 | slif-RB | 845..898 | 861..914 | 270 | 100 | Plus |
| CG5535-PB | 1866 | CG5535-RB | 857..893 | 861..897 | 135 | 94.5 | Plus |
| CG5535-PA | 1902 | CG5535-RA | 893..929 | 861..897 | 135 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 2523 | CG11128-RB | 135..1055 | 16..936 | 4515 | 99.6 | Plus |
| slif-RC | 2653 | CG11128-RC | 265..1185 | 16..936 | 4515 | 99.6 | Plus |
| slif-RA | 2744 | CG11128-RA | 356..1276 | 16..936 | 4515 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:46:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22891366..22892286 | 16..936 | 4455 | 98.9 | Plus |
| 3L | 28110227 | 3L | 17854354..17854503 | 357..208 | 270 | 78.7 | Minus |
| 3L | 28110227 | 3L | 17853690..17853847 | 897..740 | 250 | 77.2 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:46:38 has no hits.
BO09015.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:19 Download gff for
BO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-PB | 1..920 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:49 Download gff for
BO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11128-PA | 1..920 | 17..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:11:07 Download gff for
BO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 354..1276 | 12..937 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:25 Download gff for
BO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 354..1276 | 12..937 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:25 Download gff for
BO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22891358..22892286 | 5..937 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:11:07 Download gff for
BO09015.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22884458..22885386 | 5..937 | 98 | | Plus |
BO09015.complete Sequence
1846 bp (1846 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631353
> BO09015.complete
GAAGTTATCAGTCGACATGACCAATCTCTGGAAGGCATTGACGCGTCGCA
AGACGGAGGACGTGAACGAAGGCGAGTCCCAGTTGGCGCGAGTGCTGAAC
CTTTTCGATCTGACGGCTTTGGGAGTGGGCAGTACTTTGGGACTGGGAGT
CTATGTGCTGGCTGGTCAGGTGGCCTTCAATATTGCCGGGCCAGCGGTGA
CCATTTCCTTCCTGATTGCGGCCATCGCGTCTGCCTTCGCGGGGATCTGC
TATGCGGAGTTCGCCGCGCGAGTGCCCAAGGCGGGAAGCGCCTACGTATA
CAGCTACGTGACCATTGGAGAGTTCGTCGCCTTCACCATAGGATGGAATC
TCATTCTGGAGTATGTGATTGGCACAGCCTCAGTTGCGCGCGGCCTGAGC
GGATATTTCGACTCTCTGATCAACAACAACATGTCGAAGGCATTGAATGA
GTCGATGCACATCGACGTCGACTTTCTGGGTGACTACCCCGATTTTTTGT
CCTTCGGCATGGTGCTGCTCCTGGCGGCCATCCTCGCCTTTGGCGCCAAA
GAGTCAAGCTTCCTGAACAACATCTTCACCACAGTCAATCTGGTTACGAT
CGCTATCGTCCTGGTGGCTGGCGCCATGAACGCCAACGTCGACAATTGGC
GCATCCCGAAGAAAGATGTTCCCGAGGGCTTTGGCACGGGAGGCTTCATG
CCGTTCGGCATTGCTGGAGTGATGGCCGGAGCTGCCAAATGCTTCTACGG
CTTCGTGGGGTTCGACTGCATCGCCACCACGGGCGAGGAGGCCATCAACC
CAAAGCGCAACATTCCGCTCTCTATCGTGGTGTCGCTGATCATAATCTTC
CTATCCTACTTTGGAGTGTCCACGGTGCTGACTATGATGCTGCCCTACTA
CAAACAGGACAAGGATGCACCTTTTCCTCACGCTTTCGATTCCGTCGAGT
GGTACACCATCAAGTGGATTGTGACCATAGGTGCTGTGTTTGCGCTCTGC
ACTAGTTTGTTGGGCGCCATGTTCCCACTGCCTCGCATCCTCTACGCCAT
GGGCAAGGACGGCATATTGTTCAAGAGGCTGTCCACAGTGAACAGCTACA
CGAAGACCCCGCTCCTGGCCACCATTGTGTCTGGAATCTTTGCGTCCATA
ATGGCCATGCTCTTTAACCTGGACCAGCTTGTGGACATGATGTCCATCGG
AACCCTGTTAGCATACACCATCGTGGCAATTTGCGTGCTAGTGCTGCGCT
ACCAGGACGAGGAGATGACCAAGCTGGTGTCTGTCAAGGCACCGAATGTT
TTCCGGCAATTCTTCAACGGCAACTCCTTCCGGGAGCCCAATTCTATGAC
CTCGTCCATCACCAAAGTCGGCATTGTGGTGTTCGCCATCTTTTGCCTGG
TCTGGTGCTCCCTCCAGAAAGTCTTCGACCTGGACAGCACCGGCGGAATT
GTGGCGCTCAGCTTGGTGGGCGCTGTGCTAATCCTCATCTGCGTTGTGAT
CGGCATGCAGCCGGTGTCGACCATTGAGCTCACGTTCAAGGTGCCGCTAG
TGCCGTTCGTGCCGTGCCTCAGCGTCTTTGCGAATTTGTACCTGATGTTT
CAGCTGGACCTGAACACATGGATCCGCTTCCTCATCTGGATCGTGATCGG
CTACGTGATTTACTTCTGTTACGGCATGCGGAACTCCACGCAGATAAGTA
GGAGCCGCAGTCACGCCGAGGTGGCGGCAAGCGCTCTGCAGAACCAGGGA
CAGCACGTGAATCCCGGCTTCGAGCCGGACTACAAGGTCGAAAATGGGGG
TCGACCCTACGAGTTCTCCGAGAAGCTGGCAAGCTTTCTAGACCAT
BO09015.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 1815 | CG11128-PB | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| slif-RC | 1815 | CG11128-PC | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| slif-RA | 1815 | CG11128-PA | 1..1812 | 17..1828 | 9060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-RB | 2523 | CG11128-RB | 135..1947 | 16..1828 | 9065 | 100 | Plus |
| slif-RC | 2653 | CG11128-RC | 265..2077 | 16..1828 | 9065 | 100 | Plus |
| slif-RA | 2744 | CG11128-RA | 356..2168 | 16..1828 | 9065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22891366..22892495 | 16..1145 | 5650 | 100 | Plus |
| 3L | 28110227 | 3L | 22892563..22893245 | 1146..1828 | 3415 | 100 | Plus |
| 3L | 28110227 | 3L | 17853690..17853847 | 897..740 | 310 | 79.7 | Minus |
| 3L | 28110227 | 3L | 17854354..17854503 | 357..208 | 270 | 78.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:07:05 has no hits.
BO09015.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:48 Download gff for
BO09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RB | 1..1815 | 17..1832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:56 Download gff for
BO09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RB | 135..1951 | 16..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:46 Download gff for
BO09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 357..2168 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:48 Download gff for
BO09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RB | 135..1951 | 16..1833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:37:44 Download gff for
BO09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slif-RA | 357..2168 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:37:44 Download gff for
BO09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22891367..22892495 | 17..1145 | 100 | -> | Plus |
| 3L | 22892563..22893245 | 1146..1830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:46 Download gff for
BO09015.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22884467..22885595 | 17..1145 | 100 | -> | Plus |
| arm_3L | 22885663..22886345 | 1146..1830 | 99 | | Plus |
BO09015.pep Sequence
Translation from 16 to 1846
> BO09015.pep
MTNLWKALTRRKTEDVNEGESQLARVLNLFDLTALGVGSTLGLGVYVLAG
QVAFNIAGPAVTISFLIAAIASAFAGICYAEFAARVPKAGSAYVYSYVTI
GEFVAFTIGWNLILEYVIGTASVARGLSGYFDSLINNNMSKALNESMHID
VDFLGDYPDFLSFGMVLLLAAILAFGAKESSFLNNIFTTVNLVTIAIVLV
AGAMNANVDNWRIPKKDVPEGFGTGGFMPFGIAGVMAGAAKCFYGFVGFD
CIATTGEEAINPKRNIPLSIVVSLIIIFLSYFGVSTVLTMMLPYYKQDKD
APFPHAFDSVEWYTIKWIVTIGAVFALCTSLLGAMFPLPRILYAMGKDGI
LFKRLSTVNSYTKTPLLATIVSGIFASIMAMLFNLDQLVDMMSIGTLLAY
TIVAICVLVLRYQDEEMTKLVSVKAPNVFRQFFNGNSFREPNSMTSSITK
VGIVVFAIFCLVWCSLQKVFDLDSTGGIVALSLVGAVLILICVVIGMQPV
STIELTFKVPLVPFVPCLSVFANLYLMFQLDLNTWIRFLIWIVIGYVIYF
CYGMRNSTQISRSRSHAEVAASALQNQGQHVNPGFEPDYKVENGGRPYEF
SEKLASFLDH
BO09015.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slif-PB | 604 | CG11128-PB | 1..604 | 1..604 | 3085 | 100 | Plus |
| slif-PC | 604 | CG11128-PC | 1..604 | 1..604 | 3085 | 100 | Plus |
| slif-PA | 604 | CG11128-PA | 1..604 | 1..604 | 3085 | 100 | Plus |
| CG5535-PB | 621 | CG5535-PB | 6..589 | 1..570 | 1580 | 52.4 | Plus |
| CG5535-PC | 630 | CG5535-PC | 15..598 | 1..570 | 1580 | 52.4 | Plus |
