Clone Sequence Records
BO09018.3prime Sequence
951 bp (833 high quality bases) assembled on 2006-01-10
> BO09018.3prime
ATGGTCTAGAAAGCTTGCATCAGCCTTAGAAATCGATGCACGTGAAAAGT
TTTGAGCTAGCTCCACCACTTGATTCTGCATTGTCTGCAAATGTTCGTTG
GCCAGTTTTGACTCATTGCTATCGGGAATGGCCTGCAGAACTTGCAGGAC
CAAATCGTGATACCGAAGCAACAGAGCATTCTGGTCCTCGTTTAGTGAGC
CGCGAATATGCTGCAGTATGGCAGAAACGAATTTTCCGGACGCGTGCAAA
ATGCTACCAGTGATCGTGGTGAACAAGATCAGTGCAGCCAGGTGCAGCAG
CAGTGCCGGCTCGTTGCACTCTAGTAGCTGCTTCTGCAGCTTCTTTTTGT
GGTCTGCGATGAGCAGGCGATCCTTTTTCTTGTCCACCTTCTTGATGATC
ATGCTGCAGGTCTTCAGCACCGTTTCGGTCGCCAGTTCAAAGTCGTCAAT
GCTCTTATTCAGGGCTTTGTTTTGCTCAAGCAACGCGGCACGGTATTGGG
CCTCGCACTCCTGAGCCAACTTATTGCGCTGGTCCACATTCAGGTTGGTA
TTTTTCACAGTCAGATTGCACTCGCTGGCCACGTATAGCGAAAGTTCGTT
GCAAATCTCATTTCCCAATGACTTTAGCAAGTATTTAACCAACTGGGTTT
GCGTGTCCTGCGGAAAAAGCTTTAAGCCCTTCTCATAGAGCCTTATGTCT
ATCANAAGCGTATTGATGCGATCCTGGATAGCAGCGTGTGTCTGGCGACG
ATTTGTCTGCGGTGTAGCCTCGAACAACTCCTGAGCACGTGCCAGGGCCG
TCTGATTAAATTGGTTTGTATAGAGGGAAGCAATGGATTTCGACAAATGC
TCCAGTCCCTCCTCTTCCAGACTCGCAGTAATCAGTTTGACGATGTCCGC
TGTCTTGACTAGCTCCAATGGCTTAACTGCCTTTTTGCTGGCTCCACCGC
C
BO09018.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-PA | 2349 | CG1104-RA | 1414..2346 | 951..19 | 4621 | 99.7 | Minus |
| CG1104-PB | 2220 | CG1104-RB | 1285..2217 | 951..19 | 4621 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-RC | 2482 | CG1104-RC | 1449..2381 | 951..19 | 4639 | 99.8 | Minus |
| CG1104-RA | 2574 | CG1104-RA | 1541..2473 | 951..19 | 4639 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7071916..7072574 | 156..814 | 3284 | 99.8 | Plus |
| 3R | 32079331 | 3R | 7071725..7071862 | 19..156 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 7072654..7072790 | 815..951 | 670 | 99.3 | Plus |
Blast to na_te.dros performed 2015-02-11 16:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1030..1138 | 392..289 | 127 | 62.7 | Minus |
BO09018.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:22 Download gff for
BO09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-PA | 1414..2349 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:53 Download gff for
BO09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-PB | 1285..2220 | 16..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:31 Download gff for
BO09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 1541..2473 | 19..951 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:09 Download gff for
BO09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 1541..2473 | 19..951 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:09 Download gff for
BO09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7071725..7071861 | 19..155 | 100 | <- | Plus |
| 3R | 7071916..7072574 | 156..814 | 99 | <- | Plus |
| 3R | 7072654..7072790 | 815..951 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:31 Download gff for
BO09018.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2897447..2897583 | 19..155 | 100 | <- | Plus |
| arm_3R | 2897638..2898296 | 156..814 | 99 | <- | Plus |
| arm_3R | 2898376..2898512 | 815..951 | 99 | | Plus |
BO09018.5prime Sequence
876 bp (791 high quality bases) assembled on 2006-01-10
> BO09018.5prime
GAAGTTATCAGTCGACATGGGTAGTGACTGGGACGAGATCAAGCGCTTGG
CCGCCGACTTTCAGAAGGCGCAGCTCACGTCTACGCTGCAGAAGCTCTCG
GAGCGAAACTGCGTGGAGATCGTCACGCTGCTGCTGGAGAAGCAGATGCT
GGAGGTGGTGTTCACCAACGATGGCAAGGAGTACATCACGCCGGATCATC
TGGAGCGCGAGATCCAGGACGAGTTGTACGTGAACGGAGGTCGTGCCAAC
TTGGTGGAGGTCAGCAAAACCCTAAATGTGGATTTATCACGAATCGAGCT
GCTTGCCGAACGAATATCTGCGGAGAATCAAAGCGTACACCTGGTACTGG
GACAGCTAATCGACGAGGACTACATCAGTCATATTGCGCAGGAGATCAAC
GAGAAGCTGGTTCAGCGAGGAGAGGTTTCCATTTCGGAATTGGCTTCCCA
GTTCGATCTGCCGTCGGACTTCCTGCAACACGACGTGGTCGAAAAGCATC
TAGGTAAGATTATTAAGGGTCGCCAGGATGCCTCAAATCCGCGGGTGTTC
TTCACTCAGGCCTACATCCAACGTTGCAAAGCGAAGATTCGGGGAGCCCT
GGCCGCCATTACCAGGCCCATAAATGTGGCTGTGATTCTTCAGAAGATCG
GTGTGCAGGAGAAGATCTTCTACTCGTTGCTGGACGAAATCGCGCCAGCT
GGCCAGGTTACCTCCAAGCAGGCCAACTCCCAATACGTGCCGCACATCTA
TGCCAAGACGCAGGCTGACTGGGTGAACTCGTTCTACAAGCAGAACAGCT
TCCTTGAGTATGATGCCATTCAAAAGCTGGGAATTTCGGATGCCNAGTCC
TACATTCGCAAGCAGTTCCCCAACGA
BO09018.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-PA | 2349 | CG1104-RA | 1..860 | 17..876 | 4281 | 99.8 | Plus |
| CG1104-PB | 2220 | CG1104-RB | 1..731 | 146..876 | 3636 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-RC | 2482 | CG1104-RC | 36..895 | 17..876 | 4289 | 99.9 | Plus |
| CG1104-RA | 2574 | CG1104-RA | 128..987 | 17..876 | 4289 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7073400..7074182 | 876..94 | 3904 | 99.9 | Minus |
| 3R | 32079331 | 3R | 7074248..7074325 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:39:38 has no hits.
BO09018.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:23 Download gff for
BO09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:58:54 Download gff for
BO09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:33 Download gff for
BO09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..986 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:46 Download gff for
BO09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..986 | 17..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:46 Download gff for
BO09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7073401..7074182 | 94..875 | 99 | <- | Minus |
| 3R | 7074249..7074325 | 17..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:33 Download gff for
BO09018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2899971..2900047 | 17..93 | 100 | | Minus |
| arm_3R | 2899123..2899904 | 94..875 | 99 | <- | Minus |
BO09018.complete Sequence
2380 bp (2380 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631354
> BO09018.complete
GAAGTTATCAGTCGACATGGGTAGTGACTGGGACGAGATCAAGCGCTTGG
CCGCCGACTTTCAGAAGGCGCAGCTCACGTCTACGCTGCAGAAGCTCTCG
GAGCGAAACTGCGTGGAGATCGTCACGCTGCTGCTGGAGAAGCAGATGCT
GGAGGTGGTGTTCACCAACGATGGCAAGGAGTACATCACGCCGGATCATC
TGGAGCGCGAGATCCAGGACGAGTTGTACGTGAACGGAGGTCGTGCCAAC
TTGGTGGAGGTCAGCAAAACCCTAAATGTGGATTTATCACGAATCGAGCT
GCTTGCCGAACGAATATCTGCGGAGAATCAAAGCGTACACCTGGTACTGG
GACAGCTAATCGACGAGGACTACATCAGTCATATTGCGCAGGAGATCAAC
GAGAAGCTGGTTCAGCGAGGAGAGGTTTCCATTTCGGAATTGGCTTCCCA
GTTCGATCTGCCGTCGGACTTCCTGCAACACGACGTGGTCGAAAAGCATC
TAGGTAAGATTATTAAGGGTCGCCAGGATGCCTCAAATCCGCGGGTGTTC
TTCACTCAGGCCTACATCCAACGTTGCAAAGCGAAGATTCGGGGAGCCCT
GGCCGCCATTACCAGGCCCATAAATGTGGCTGTGATTCTTCAGAAGATCG
GTGTGCAGGAGAAGATCTTCTACTCGTTGCTGGACGAAATCGCGCCAGCT
GGCCAGGTTACCTCCAAGCAGGCCAACTCCCAATACGTGCCGCACATCTA
TGCCAAGACGCAGGCTGACTGGGTGAACTCGTTCTACAAGCAGAACAGCT
TCCTTGAGTATGATGCCATTCAAAAGCTGGGAATTTCGGATGCCAAGTCC
TACATTCGCAAGCAGTTCCCCAACGAAGAGTTTCTCTACCTCAAGCGTGT
GGCCCTTGGCGCTCGACTGGTGGAGCTCACGGTGGTCACGGCGCTAAATG
AGTGCAGTGCCACCAAGCAGTACCTGGATCTGACCACCATACTTCCATCG
AATCTGTCCGAGGAGGATATCGAGGAGGTTTTCAGCACCATCATGGCCCA
AAAGCATAGCAATCCCAGCAACTTTGTTTATCTTGATGGCATTGTATTTT
CGCAACCATACCTCGCGCAATTGGTTCAGCCGTGTCAAGCGTTGGCAGAG
TCTCAGGCCAAGGCGGCCATCGATGGCGGCGTATACCAGCAGTACATTGT
GGAGAAGACGCTAGCGCAAAAGGGAAACGTGTCGACCCAAGAGCTAGAGG
ACGAAGGCAAGGTGGACAAGCGCGACGAGCGGCGAAAGAAGGCGTCCTCT
GGCAAAGCAGGAGGAGGAGCCCAAGGGCGTGAGACCAAGACCAAGTCCAC
GAAGAAGCATCAACGCGGAAAGGCGGCAGCTCAGTTCGACAGTGATGATG
AGGACGATGCACAGCAAGGCTCTCGAGGTGGCGGTGGAGCAAGCAAAAAG
GCAGTTAAGCCATTGGAGCTAGTCAAGACAGCGGACATCGTCAAACTGAT
TACTGCGAGTCTGGAAGAGGAGGGACTGGAGCATTTGTCGAAATCCATTG
CTTCCCTCTATACAAACCAATTTAATCAGACGGCCCTGGCACGTGCTCAG
GAGTTGTTCGAGGCTACACCGCAGACAAATCGTCGCCAGACACACGCTGC
TATCCAGGATCGCATCAATACGCTTTTGATAGACATAAGGCTCTATGAGA
AGGGCTTAAAGCTTTTTCCGCAGGACACGCAAACCCAGTTGGTTAAATAC
TTGCTAAAGTCATTGGGAAATGAGATTTGCAACGAACTTTCGCTATACGT
GGCCAGCGAGTGCAATCTGACTGTGAAAAATACCAACCTGAATGTGGACC
AGCGCAATAAGTTGGCTCAGGAGTGCGAGGCCCAATACCGTGCCGCGTTG
CTTGAGCAAAACAAAGCCCTGAATAAGAGCATTGACGACTTTGAACTGGC
GACCGAAACGGTGCTGAAGACCTGCAGCATGATCATCAAGAAGGTGGACA
AGAAAAAGGATCGCCTGCTCATCGCAGACCACAAAAAGAAGCTGCAGAAG
CAGCTACTAGAGTGCAACGAGCCGGCACTGCTGCTGCACCTGGCTGCACT
GATCTTGTTCACCACGATCACTGGTAGCATTTTGCACGCGTCCGGAAAAT
TCGTTTCTGCCATACTGCAGCATATTCGCGGCTCACTAAACGAGGACCAG
AATGCTCTGTTGCTTCGGTATCACGATTTGGTCCTGCAAGTTCTGCAGGC
CATTCCCGATAGCAATGAGTCAAAACTGGCCAACGAACATTTGCAGACAA
TGCAGAATCAAGTGGTGGAGCTAGCTCAAAACTTTTCACGTGCATCGATT
TCTAAGGCTGATGCAAGCTTTCTAGACCAT
BO09018.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-RC | 2349 | CG1104-PC | 1..2346 | 17..2362 | 11730 | 100 | Plus |
| CG1104-RA | 2349 | CG1104-PA | 1..2346 | 17..2362 | 11730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-RC | 2482 | CG1104-RC | 36..2381 | 17..2362 | 11730 | 100 | Plus |
| CG1104-RA | 2574 | CG1104-RA | 128..2473 | 17..2362 | 11730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7073182..7074182 | 1094..94 | 5005 | 100 | Minus |
| 3R | 32079331 | 3R | 7071916..7072574 | 2225..1567 | 3295 | 100 | Minus |
| 3R | 32079331 | 3R | 7072654..7073126 | 1566..1094 | 2365 | 100 | Minus |
| 3R | 32079331 | 3R | 7071725..7071862 | 2362..2225 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 7074248..7074325 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:08:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1030..1138 | 1989..2092 | 127 | 62.7 | Plus |
BO09018.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:49 Download gff for
BO09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 1..2349 | 17..2365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:58 Download gff for
BO09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 126..2471 | 17..2362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:15 Download gff for
BO09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..2473 | 17..2364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:49 Download gff for
BO09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 126..2471 | 17..2362 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:13 Download gff for
BO09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..2473 | 17..2364 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:13 Download gff for
BO09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7071722..7071861 | 2226..2364 | 98 | <- | Minus |
| 3R | 7071916..7072574 | 1567..2225 | 100 | <- | Minus |
| 3R | 7072654..7073125 | 1095..1566 | 100 | <- | Minus |
| 3R | 7073182..7074182 | 94..1094 | 100 | <- | Minus |
| 3R | 7074249..7074325 | 17..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:15 Download gff for
BO09018.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2897444..2897583 | 2226..2364 | 98 | <- | Minus |
| arm_3R | 2897638..2898296 | 1567..2225 | 100 | <- | Minus |
| arm_3R | 2898376..2898847 | 1095..1566 | 100 | <- | Minus |
| arm_3R | 2898904..2899904 | 94..1094 | 100 | <- | Minus |
| arm_3R | 2899971..2900047 | 17..93 | 100 | | Minus |
BO09018.pep Sequence
Translation from 16 to 2380
> BO09018.pep
MGSDWDEIKRLAADFQKAQLTSTLQKLSERNCVEIVTLLLEKQMLEVVFT
NDGKEYITPDHLEREIQDELYVNGGRANLVEVSKTLNVDLSRIELLAERI
SAENQSVHLVLGQLIDEDYISHIAQEINEKLVQRGEVSISELASQFDLPS
DFLQHDVVEKHLGKIIKGRQDASNPRVFFTQAYIQRCKAKIRGALAAITR
PINVAVILQKIGVQEKIFYSLLDEIAPAGQVTSKQANSQYVPHIYAKTQA
DWVNSFYKQNSFLEYDAIQKLGISDAKSYIRKQFPNEEFLYLKRVALGAR
LVELTVVTALNECSATKQYLDLTTILPSNLSEEDIEEVFSTIMAQKHSNP
SNFVYLDGIVFSQPYLAQLVQPCQALAESQAKAAIDGGVYQQYIVEKTLA
QKGNVSTQELEDEGKVDKRDERRKKASSGKAGGGAQGRETKTKSTKKHQR
GKAAAQFDSDDEDDAQQGSRGGGGASKKAVKPLELVKTADIVKLITASLE
EEGLEHLSKSIASLYTNQFNQTALARAQELFEATPQTNRRQTHAAIQDRI
NTLLIDIRLYEKGLKLFPQDTQTQLVKYLLKSLGNEICNELSLYVASECN
LTVKNTNLNVDQRNKLAQECEAQYRAALLEQNKALNKSIDDFELATETVL
KTCSMIIKKVDKKKDRLLIADHKKKLQKQLLECNEPALLLHLAALILFTT
ITGSILHASGKFVSAILQHIRGSLNEDQNALLLRYHDLVLQVLQAIPDSN
ESKLANEHLQTMQNQVVELAQNFSRASISKADASFLDH
BO09018.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-PC | 782 | CG1104-PC | 1..782 | 1..782 | 3903 | 100 | Plus |
| CG1104-PA | 782 | CG1104-PA | 1..782 | 1..782 | 3903 | 100 | Plus |
