Clone Sequence Records
BO09024.3prime Sequence
858 bp (818 high quality bases) assembled on 2006-01-10
> BO09024.3prime
ATGGTCTAGAAAGCTTGCGTAGGCGTGGTTGGCCACGAACAGGGATCCAG
ATCCGGCACCAGCGCTGCCGGCAACGTACTTGCCCTGAGCAGCATCACCG
TTGGCCTTGGCGCGCTTAAGCAGCTCGTTCTGGCCGGCAGCAATGTTCTC
CTTCTTGCCAGCCCAGGCACGCAGGACGGAGGCCTGCAGGGCACGACCGT
ACGAGAAGGTGAGGGCCCATGGGCGGATCAAGGGAACGTTGTTGATGGCA
CTCAGGTTGACGGTGGCCTCCTCCTCGGACTGACCTCCAGACAGGAAGGT
CACGCCAGTAACGGCGGCGGGAACGGTGCGGCGCAGAGCCTGCACGGTGG
CCAGGGCGATCTCCTCGGGGGTGTTCTTCTTGGCCGACTGACCGGCGGTG
ACCATGTTGGGCTTCAGCAGAGTACCCTCCAGGTAGACGTGGTGGTCGCT
CAGGGCCTTGTAGACGGCGGCCAGGACGGTCTCGGTGACCTTCTGGGCGC
GGTCCAGATCGTGATCGCCATCGGGCAGAACCTCGGGCTCCACAATTGGG
ACGATGCGCTGCGACTGGCAGATGGAGGCGTAGCGGGCCAGGACATTGGC
GTTCTCCAGGATCGACTGGTAGGATGGGGTGTTCTTGCCGATCTTCAGGA
CGCAACGCCACTTGGCGAAGTCGCAACCGTCCTTCTTGTACTGGGCGCAA
CGGGCGGCCAGGTCATCCAGACCCTGGGTGGTGACCTCATCCTCAGAGCC
GAACAGTGGGACAACACCCTTGTCGACCTTGATGCCCAGAATGATTCCCT
TCTTCTTCAGGATCTCGGCGAAGGGGGTGCCATCATCGGCCTTCTGGTAG
AGGGTCTC
BO09024.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6058-PB | 1086 | Ald-RB | 244..1083 | 858..19 | 4200 | 100 | Minus |
| CG6058-PC | 1086 | Ald-RC | 244..1083 | 858..19 | 4200 | 100 | Minus |
| CG6058-PF | 1185 | Ald-RF | 343..1182 | 858..19 | 4200 | 100 | Minus |
| CG6058-PD | 1086 | Ald-RD | 244..1083 | 858..19 | 4200 | 100 | Minus |
| CG6058-PH | 1092 | Ald-RH | 244..1001 | 858..101 | 3790 | 100 | Minus |
| CG6058-PA | 1191 | Ald-RA | 343..1103 | 858..98 | 3780 | 99.8 | Minus |
| CG6058-PG | 1191 | Ald-RG | 343..1103 | 858..98 | 3780 | 99.8 | Minus |
| CG6058-PE | 1092 | Ald-RE | 244..1004 | 858..98 | 3780 | 99.8 | Minus |
| CG5432-PA | 1095 | CG5432-RA | 343..389 | 759..713 | 160 | 93.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RM | 2102 | CG6058-RM | 521..1360 | 858..19 | 4200 | 100 | Minus |
| Ald-RK | 1472 | CG6058-RK | 492..1331 | 858..19 | 4200 | 100 | Minus |
| Ald-RD | 1483 | CG6058-RD | 503..1342 | 858..19 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257224..26257777 | 305..858 | 2770 | 100 | Plus |
| 3R | 32079331 | 3R | 26256932..26257137 | 105..310 | 1015 | 99.5 | Plus |
| 3R | 32079331 | 3R | 26255345..26255433 | 19..107 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 26414474..26414832 | 759..401 | 445 | 74.9 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:18:00 has no hits.
BO09024.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:35 Download gff for
BO09024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-PD | 244..1086 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:10 Download gff for
BO09024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6058-PB | 244..1086 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:54:32 Download gff for
BO09024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 503..1351 | 10..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:35:22 Download gff for
BO09024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 503..1351 | 10..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:35:22 Download gff for
BO09024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26255335..26255431 | 10..105 | 95 | <- | Plus |
| 3R | 26256933..26257132 | 106..305 | 100 | <- | Plus |
| 3R | 26257225..26257777 | 306..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:54:32 Download gff for
BO09024.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22081057..22081153 | 10..105 | 95 | <- | Plus |
| arm_3R | 22082655..22082854 | 106..305 | 100 | <- | Plus |
| arm_3R | 22082947..22083499 | 306..858 | 100 | | Plus |
BO09024.5prime Sequence
919 bp (732 high quality bases) assembled on 2006-01-10
> BO09024.5prime
GAAGTTATCAGTCGACATGACGACCTACTTCAACTACCCCAGCAAGGAGC
TGCAGGATGAGCTGCGCGAAATCGCCCAGAAAATCGTTGCCCCCGGCAAG
GGAATCCTCGCCGCCGATGAGTCCGGCCCAACCATGGGCAAGCGTCTGCA
GGACATCGGCGTGGAGAACACCGAGGACAACCGCCGTGCCTACCGTCAGC
TGTTGTTCAGCACTGACCCCAAGCTGGCCGAGAACATCTCTGGAGTGATC
CTGTTCCACGAGACCCTCTACCAGAAGGCCGATGATGGCACCCCCTTCGC
CGAGATCCTGAAGAAGAAGGGAATCATTCTGGGCATCAAGGTCGACAAGG
GTGTTGTCCCACTGTTCGGCTCTGAGGATGAGGTCACCACCCAGGGTCTG
GATGACCTGGCCGCCCGTTGCGCCCAGTACAAGAAGGACGGTTGCGACTT
CGCCAAGTGGCGTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACC
AGTCGATCCTGGAGAACGCCAATGTCCTGGCCCGCTACGCCTCCATCTGC
CAGTCGCAGCGCATCGTCCCAATTGTGGAGCCCGAGGTTCTGCCCGATGG
CGATCACGATCTGGACCGCGCCCAGAAGGTCACCGAGACCGTCCTGGCCG
CCGTCTACAAGGCCCTGAGCGACCACCACGTCTACCTGGAGGGTACTCTG
CTGAAGCCCAACATGGTCACCGCCGGTCAGTCGGCCAAGAAGAACACCCC
CGAGGAGATCGCCCTGGCCACCGTGCAGGCTCTGCGCCGCACCGTTCCCG
CCGCCGTTACTGGCGTGACCTTCCTGTCTGGAGGTCAGTCCGAGGAGGAG
GCCACCGTCAACCTGAGTGCCATCAACACGTTCCCTTGATCCGCCCATGG
GCCCTCACCTTCTCGTACG
BO09024.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6058-PB | 1086 | Ald-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG6058-PC | 1086 | Ald-RC | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG6058-PA | 1191 | Ald-RA | 100..961 | 17..878 | 4310 | 100 | Plus |
| CG6058-PF | 1185 | Ald-RF | 100..961 | 17..878 | 4310 | 100 | Plus |
| CG6058-PG | 1191 | Ald-RG | 100..961 | 17..878 | 4310 | 100 | Plus |
| CG6058-PD | 1086 | Ald-RD | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG6058-PE | 1092 | Ald-RE | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG6058-PH | 1092 | Ald-RH | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG6058-PB | 1086 | Ald-RB | 863..904 | 878..919 | 210 | 100 | Plus |
| CG6058-PC | 1086 | Ald-RC | 863..904 | 878..919 | 210 | 100 | Plus |
| CG6058-PA | 1191 | Ald-RA | 962..1003 | 878..919 | 210 | 100 | Plus |
| CG6058-PF | 1185 | Ald-RF | 962..1003 | 878..919 | 210 | 100 | Plus |
| CG6058-PG | 1191 | Ald-RG | 962..1003 | 878..919 | 210 | 100 | Plus |
| CG6058-PD | 1086 | Ald-RD | 863..904 | 878..919 | 210 | 100 | Plus |
| CG6058-PE | 1092 | Ald-RE | 863..904 | 878..919 | 210 | 100 | Plus |
| CG6058-PH | 1092 | Ald-RH | 863..904 | 878..919 | 210 | 100 | Plus |
| CG5432-PA | 1095 | CG5432-RA | 343..389 | 359..405 | 160 | 93.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RM | 2102 | CG6058-RM | 278..1181 | 17..919 | 4495 | 99.9 | Plus |
| Ald-RJ | 1614 | CG6058-RJ | 277..1180 | 17..919 | 4495 | 99.9 | Plus |
| Ald-RL | 1615 | CG6058-RL | 278..1181 | 17..919 | 4495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257224..26258020 | 813..17 | 3985 | 100 | Minus |
| 3R | 32079331 | 3R | 26414213..26414832 | 98..717 | 505 | 72.1 | Plus |
| 3R | 32079331 | 3R | 26257025..26257137 | 919..808 | 500 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:34:39 has no hits.
BO09024.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:36 Download gff for
BO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-PE | 1..904 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:12 Download gff for
BO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6058-PF | 100..1003 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:37:59 Download gff for
BO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RL | 278..1181 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:04:46 Download gff for
BO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RL | 278..1181 | 17..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:04:46 Download gff for
BO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26257025..26257132 | 813..919 | 99 | <- | Minus |
| 3R | 26257225..26258020 | 17..812 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:37:59 Download gff for
BO09024.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22082747..22082854 | 813..919 | 99 | <- | Minus |
| arm_3R | 22082947..22083742 | 17..812 | 100 | | Minus |
BO09024.complete Sequence
1117 bp (1117 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ638665
> BO09024.complete
GAAGTTATCAGTCGACATGACGACCTACTTCAACTACCCCAGCAAGGAGC
TGCAGGATGAGCTGCGCGAAATCGCCCAGAAAATCGTTGCCCCCGGCAAG
GGAATCCTCGCCGCCGATGAGTCCGGCCCAACCATGGGCAAGCGTCTGCA
GGACATCGGCGTGGAGAACACCGAGGACAACCGCCGTGCCTACCGTCAGC
TGTTGTTCAGCACTGACCCCAAGCTGGCCGAGAACATCTCTGGAGTGATC
CTGTTCCACGAGACCCTCTACCAGAAGGCCGATGATGGCACCCCCTTCGC
CGAGATCCTGAAGAAGAAGGGAATCATTCTGGGCATCAAGGTCGACAAGG
GTGTTGTCCCACTGTTCGGCTCTGAGGATGAGGTCACCACCCAGGGTCTG
GATGACCTGGCCGCCCGTTGCGCCCAGTACAAGAAGGACGGTTGCGACTT
CGCCAAGTGGCGTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACC
AGTCGATCCTGGAGAACGCCAATGTCCTGGCCCGCTACGCCTCCATCTGC
CAGTCGCAGCGCATCGTCCCAATTGTGGAGCCCGAGGTTCTGCCCGATGG
CGATCACGATCTGGACCGCGCCCAGAAGGTCACCGAGACCGTCCTGGCCG
CCGTCTACAAGGCCCTGAGCGACCACCACGTCTACCTGGAGGGTACTCTG
CTGAAGCCCAACATGGTCACCGCCGGTCAGTCGGCCAAGAAGAACACCCC
CGAGGAGATCGCCCTGGCCACCGTGCAGGCTCTGCGCCGCACCGTTCCCG
CCGCCGTTACTGGCGTGACCTTCCTGTCTGGAGGTCAGTCCGAGGAGGAG
GCCACCGTCAACCTGAGTGCCATCAACAACGTTCCCTTGATCCGCCCATG
GGCCCTCACCTTCTCGTACGGTCGTGCCCTGCAGGCCTCCGTCCTGCGTG
CCTGGGCTGGCAAGAAGGAGAACATTGCTGCCGGCCAGAACGAGCTGCTT
AAGCGCGCCAAGGCCAACGGTGATGCTGCTCAGGGCAAGTACGTTGCCGG
CAGCGCTGGTGCCGGATCTGGATCCCTGTTCGTGGCCAACCACGCCTACG
CAAGCTTTCTAGACCAT
BO09024.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RM | 1086 | CG6058-PM | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| Ald-RK | 1086 | CG6058-PK | 1..1083 | 17..1099 | 5415 | 100 | Plus |
| Ald-RD | 1086 | CG6058-PD | 1..1083 | 17..1099 | 5415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RM | 2102 | CG6058-RM | 278..1360 | 17..1099 | 5415 | 100 | Plus |
| Ald-RK | 1472 | CG6058-RK | 249..1331 | 17..1099 | 5415 | 100 | Plus |
| Ald-RD | 1483 | CG6058-RD | 260..1342 | 17..1099 | 5415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257224..26258020 | 813..17 | 3985 | 100 | Minus |
| 3R | 32079331 | 3R | 26256932..26257137 | 1013..808 | 1015 | 99.5 | Minus |
| 3R | 32079331 | 3R | 26414213..26414832 | 98..717 | 505 | 72.1 | Plus |
| 3R | 32079331 | 3R | 26255345..26255433 | 1099..1011 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:37:25 has no hits.
BO09024.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:48 Download gff for
BO09024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 1..1086 | 17..1103 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:43 Download gff for
BO09024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 258..1349 | 17..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:18 Download gff for
BO09024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 260..1342 | 17..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:48 Download gff for
BO09024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 258..1349 | 17..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:03 Download gff for
BO09024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RD | 260..1342 | 17..1101 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:03 Download gff for
BO09024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26255343..26255431 | 1013..1101 | 97 | <- | Minus |
| 3R | 26256933..26257132 | 813..1012 | 100 | <- | Minus |
| 3R | 26257225..26258020 | 17..812 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:18 Download gff for
BO09024.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22081065..22081153 | 1013..1101 | 97 | <- | Minus |
| arm_3R | 22082655..22082854 | 813..1012 | 100 | <- | Minus |
| arm_3R | 22082947..22083742 | 17..812 | 100 | | Minus |
BO09024.pep Sequence
Translation from 16 to 1117
> BO09024.pep
MTTYFNYPSKELQDELREIAQKIVAPGKGILAADESGPTMGKRLQDIGVE
NTEDNRRAYRQLLFSTDPKLAENISGVILFHETLYQKADDGTPFAEILKK
KGIILGIKVDKGVVPLFGSEDEVTTQGLDDLAARCAQYKKDGCDFAKWRC
VLKIGKNTPSYQSILENANVLARYASICQSQRIVPIVEPEVLPDGDHDLD
RAQKVTETVLAAVYKALSDHHVYLEGTLLKPNMVTAGQSAKKNTPEEIAL
ATVQALRRTVPAAVTGVTFLSGGQSEEEATVNLSAINNVPLIRPWALTFS
YGRALQASVLRAWAGKKENIAAGQNELLKRAKANGDAAQGKYVAGSAGAG
SGSLFVANHAYASFLDH
BO09024.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-PM | 361 | CG6058-PM | 1..361 | 1..361 | 1838 | 100 | Plus |
| Ald-PK | 361 | CG6058-PK | 1..361 | 1..361 | 1838 | 100 | Plus |
| Ald-PD | 361 | CG6058-PD | 1..361 | 1..361 | 1838 | 100 | Plus |
| Ald-PC | 361 | CG6058-PC | 1..361 | 1..361 | 1838 | 100 | Plus |
| Ald-PB | 361 | CG6058-PB | 1..361 | 1..361 | 1838 | 100 | Plus |
