Clone BO09025 Report

Search the DGRC for BO09025

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG13089-RA
Protein status:BO09025.pep: validated full length
Sequenced Size:1312

Clone Sequence Records

BO09025.3prime Sequence

984 bp (855 high quality bases) assembled on 2006-01-10

> BO09025.3prime
ATGGTCTAGAAAGCTTGCCTTTAAGACTATCCTCGCTTCCTCGCCATCGA
TCAGAATCTTCTGACCATTGAACAAGCAGAACTCACGTTTAACGTGCGCG
AACAGCAGATCGGTGATTAGAAATATCTGCCCAGTGGAAAACGCAAGAGT
GGCACCGAAATAGAAATTGGCATTTGCCGATCCTGCATAGATCCACAAAT
GCCAAAGGGCTCCCATCATAGATAGAGTGACCAGGAAGAACGTAAAGACC
ACAAAGCCATGGGCCATGAATTTCCAACATCTTTTCCACAGCGGAAGCAA
GGCCAGATAAAAGCCGACATCGCCCAGGCTGGGATACGCCCTAAAAACGG
CCATAAGGGCCACCAATACCGTGGCTAGCAGTAGGGGCTCCTTGCGCAGC
TTAATACTTAGTGGCACCAGGTATAATACGGTGGCATTCAATTGGAATGT
GATTAGGAACATGGTGCGGAAGTGCTCAAACATTTCAGTAAAAAAGTACC
AGAAGAGACCGATATTTGGCTGTAGATCGCGGAAATAAAATATAAAACCC
AACGTTCCATCCAGGAAGTTCCAGCTGTTCAGCACAAAATAGTTCGCAAC
TGCCACGATTAGACAACTGACGATAAAGAGCGCCGCTATAGCCACACCCC
TCCTGACCGAATTCCGTGAAAAGACCAGGAGCAGTGGTGCTATAAGTACA
ATGGGATAGAAGCTGCGGACAGTTTCGAACGCGAGGACTAGAAGGCATGG
AATGAGCATTCCCTTCACGAGGCAGTAGAAAAAGAAAGCCAGGAACAGAT
TGCTTATCACGGTGGAGGTCATTCCAATGCAGCTCATAACAGTCAGTGGA
CTGAAAAGATATGCCACGATCACAAGTTCCGGAAATGTCAGCTTGTCCAG
CGGGCCCAACTGCAGCTCTTCCGTATCCTTGGCATACTCTTTTCGCTCTT
GTCCTGCTGATCCTGCTTTTGCTTGACGAATCTC

BO09025.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13089-PA 1281 CG13089-RA 413..1278 884..19 4330 100 Minus
CG13089-PA 1281 CG13089-RA 349..407 948..890 245 96.6 Minus
CG13089-PA 1281 CG13089-RA 312..348 984..948 185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1478 CG13089-RA 369..1335 984..19 4735 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515524..8515967 984..542 2065 98.2 Minus
2L 23513712 2L 8516030..8516301 541..270 1360 100 Minus
2L 23513712 2L 8516362..8516612 269..19 1255 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:45:07 has no hits.

BO09025.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:37 Download gff for BO09025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13089-PA 312..1281 15..984 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:13 Download gff for BO09025.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13089-PA 312..1281 15..984 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:30:04 Download gff for BO09025.3prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 369..1343 10..984 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:56 Download gff for BO09025.3prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 369..1343 10..984 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:56 Download gff for BO09025.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8515524..8515967 542..984 98 -> Minus
2L 8516030..8516301 270..541 100 -> Minus
2L 8516362..8516620 10..269 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:30:04 Download gff for BO09025.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8515524..8515967 542..984 98 -> Minus
arm_2L 8516030..8516301 270..541 100 -> Minus
arm_2L 8516362..8516620 10..269 98   Minus

BO09025.5prime Sequence

828 bp (792 high quality bases) assembled on 2006-01-10

> BO09025.5prime
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGA

BO09025.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13089-PA 1281 CG13089-RA 1..812 17..828 4060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1478 CG13089-RA 58..869 17..828 4060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515343..8515967 147..771 3125 100 Plus
2L 23513712 2L 8515153..8515282 17..146 650 100 Plus
2L 23513712 2L 8516030..8516086 772..828 285 100 Plus
Blast to na_te.dros performed 2015-02-02 09:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 3472..3534 278..214 122 67.7 Minus

BO09025.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:38 Download gff for BO09025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13089-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:14 Download gff for BO09025.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13089-PA 1..811 17..827 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:51 Download gff for BO09025.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..868 17..827 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:26 Download gff for BO09025.5prime
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..868 17..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:26 Download gff for BO09025.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8515153..8515282 17..146 100 -> Plus
2L 8515343..8515967 147..771 100 -> Plus
2L 8516030..8516085 772..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:51 Download gff for BO09025.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8515153..8515282 17..146 100 -> Plus
arm_2L 8515343..8515967 147..771 100 -> Plus
arm_2L 8516030..8516085 772..827 100   Plus

BO09025.complete Sequence

1312 bp (1312 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ638666

> BO09025.complete
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACC
ATGTTCCTAATCACATTCCAATTGAATGCCACCGTATTATACCTGGTGCC
ACTAAGTATTAAGCTGCGCAAGGAGCCCCTACTGCTAGCCACGGTATTGG
TGGCCCTTATGGCCGTTTTTAGGGCGTATCCCAGCCTGGGCGATGTCGGC
TTTTATCTGGCCTTGCTTCCGCTGTGGAAAAGATGTTGGAAATTCATGGC
CCATGGCTTTGTGGTCTTTACGTTCTTCCTGGTCACTCTATCTATGATGG
GAGCCCTTTGGCATTTGTGGATCTATGCAGGATCGGCAAATGCCAATTTC
TATTTCGGTGCCACTCTTGCGTTTTCCACTGGGCAGATATTTCTAATCAC
CGATCTGCTGTTCGCGCACGTTAAACGTGAGTTCTGCTTGTTCAATGGTC
AGAAGATTCTGATCGATGGCGAGGAAGCGAGGATAGTCTTAAAGGCAAGC
TTTCTAGACCAT

BO09025.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1281 CG13089-PA 1..1278 17..1294 6390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-RA 1478 CG13089-RA 58..1335 17..1294 6390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8515343..8515967 147..771 3125 100 Plus
2L 23513712 2L 8516030..8516301 772..1043 1360 100 Plus
2L 23513712 2L 8516362..8516612 1044..1294 1255 100 Plus
2L 23513712 2L 8515153..8515282 17..146 650 100 Plus
Blast to na_te.dros performed 2014-11-27 06:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 3472..3534 278..214 122 67.7 Minus

BO09025.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:49 Download gff for BO09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 1..1281 17..1298 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:45 Download gff for BO09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 56..1341 17..1303 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:14 Download gff for BO09025.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..1335 17..1296 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:50 Download gff for BO09025.complete
Subject Subject Range Query Range Percent Splice Strand
CG13089-RA 56..1341 17..1303 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:53 Download gff for BO09025.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-U-RA 58..1335 17..1296 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:53 Download gff for BO09025.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8515153..8515282 17..146 100 -> Plus
2L 8515343..8515967 147..771 100 -> Plus
2L 8516030..8516301 772..1043 100 -> Plus
2L 8516362..8516612 1044..1296 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:14 Download gff for BO09025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8516362..8516612 1044..1296 99   Plus
arm_2L 8515153..8515282 17..146 100 -> Plus
arm_2L 8515343..8515967 147..771 100 -> Plus
arm_2L 8516030..8516301 772..1043 100 -> Plus

BO09025.pep Sequence

Translation from 16 to 1312

> BO09025.pep
MDSKFFKLLLLGGAVRFYFCRTPLAPMIGNRVEFATPLNSHKRMQEGIFL
LQSGIDPYLGDLVHESPLILSALSGLFQKYPQFLPIFYIILDICTAALLY
AMSLRFVKQKQDQQDKERKEYAKDTEELQFGPLDKLDIPELVIVAYLFSP
LTVMSCIGMTSTVISNLFLAFFFYCLVKGMLIPCLLVLAFETVRSFYPIV
LIAPLLLVFSRNSVRRGVAIAALFIVSCLIVAVANYFVLNSWNFLDGTLG
FIFYFRDLQPNIGLFWYFFTEMFEHFRTMFLITFQLNATVLYLVPLSIKL
RKEPLLLATVLVALMAVFRAYPSLGDVGFYLALLPLWKRCWKFMAHGFVV
FTFFLVTLSMMGALWHLWIYAGSANANFYFGATLAFSTGQIFLITDLLFA
HVKREFCLFNGQKILIDGEEARIVLKASFLDH

BO09025.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-U-PA 426 CG13089-PA 1..426 1..426 2200 100 Plus