Clone Sequence Records
BO09025.3prime Sequence
984 bp (855 high quality bases) assembled on 2006-01-10
> BO09025.3prime
ATGGTCTAGAAAGCTTGCCTTTAAGACTATCCTCGCTTCCTCGCCATCGA
TCAGAATCTTCTGACCATTGAACAAGCAGAACTCACGTTTAACGTGCGCG
AACAGCAGATCGGTGATTAGAAATATCTGCCCAGTGGAAAACGCAAGAGT
GGCACCGAAATAGAAATTGGCATTTGCCGATCCTGCATAGATCCACAAAT
GCCAAAGGGCTCCCATCATAGATAGAGTGACCAGGAAGAACGTAAAGACC
ACAAAGCCATGGGCCATGAATTTCCAACATCTTTTCCACAGCGGAAGCAA
GGCCAGATAAAAGCCGACATCGCCCAGGCTGGGATACGCCCTAAAAACGG
CCATAAGGGCCACCAATACCGTGGCTAGCAGTAGGGGCTCCTTGCGCAGC
TTAATACTTAGTGGCACCAGGTATAATACGGTGGCATTCAATTGGAATGT
GATTAGGAACATGGTGCGGAAGTGCTCAAACATTTCAGTAAAAAAGTACC
AGAAGAGACCGATATTTGGCTGTAGATCGCGGAAATAAAATATAAAACCC
AACGTTCCATCCAGGAAGTTCCAGCTGTTCAGCACAAAATAGTTCGCAAC
TGCCACGATTAGACAACTGACGATAAAGAGCGCCGCTATAGCCACACCCC
TCCTGACCGAATTCCGTGAAAAGACCAGGAGCAGTGGTGCTATAAGTACA
ATGGGATAGAAGCTGCGGACAGTTTCGAACGCGAGGACTAGAAGGCATGG
AATGAGCATTCCCTTCACGAGGCAGTAGAAAAAGAAAGCCAGGAACAGAT
TGCTTATCACGGTGGAGGTCATTCCAATGCAGCTCATAACAGTCAGTGGA
CTGAAAAGATATGCCACGATCACAAGTTCCGGAAATGTCAGCTTGTCCAG
CGGGCCCAACTGCAGCTCTTCCGTATCCTTGGCATACTCTTTTCGCTCTT
GTCCTGCTGATCCTGCTTTTGCTTGACGAATCTC
BO09025.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13089-PA | 1281 | CG13089-RA | 413..1278 | 884..19 | 4330 | 100 | Minus |
CG13089-PA | 1281 | CG13089-RA | 349..407 | 948..890 | 245 | 96.6 | Minus |
CG13089-PA | 1281 | CG13089-RA | 312..348 | 984..948 | 185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-RA | 1478 | CG13089-RA | 369..1335 | 984..19 | 4735 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8515524..8515967 | 984..542 | 2065 | 98.2 | Minus |
2L | 23513712 | 2L | 8516030..8516301 | 541..270 | 1360 | 100 | Minus |
2L | 23513712 | 2L | 8516362..8516612 | 269..19 | 1255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:45:07 has no hits.
BO09025.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:37 Download gff for
BO09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-PA | 312..1281 | 15..984 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:13 Download gff for
BO09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-PA | 312..1281 | 15..984 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:30:04 Download gff for
BO09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 369..1343 | 10..984 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:39:56 Download gff for
BO09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 369..1343 | 10..984 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:39:56 Download gff for
BO09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8515524..8515967 | 542..984 | 98 | -> | Minus |
2L | 8516030..8516301 | 270..541 | 100 | -> | Minus |
2L | 8516362..8516620 | 10..269 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:30:04 Download gff for
BO09025.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8515524..8515967 | 542..984 | 98 | -> | Minus |
arm_2L | 8516030..8516301 | 270..541 | 100 | -> | Minus |
arm_2L | 8516362..8516620 | 10..269 | 98 | | Minus |
BO09025.5prime Sequence
828 bp (792 high quality bases) assembled on 2006-01-10
> BO09025.5prime
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGA
BO09025.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13089-PA | 1281 | CG13089-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-RA | 1478 | CG13089-RA | 58..869 | 17..828 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8515343..8515967 | 147..771 | 3125 | 100 | Plus |
2L | 23513712 | 2L | 8515153..8515282 | 17..146 | 650 | 100 | Plus |
2L | 23513712 | 2L | 8516030..8516086 | 772..828 | 285 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 09:44:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 3472..3534 | 278..214 | 122 | 67.7 | Minus |
BO09025.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:38 Download gff for
BO09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:14 Download gff for
BO09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-PA | 1..811 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:51 Download gff for
BO09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..868 | 17..827 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:26 Download gff for
BO09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..868 | 17..827 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:26 Download gff for
BO09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
2L | 8516030..8516085 | 772..827 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:51 Download gff for
BO09025.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
arm_2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
arm_2L | 8516030..8516085 | 772..827 | 100 | | Plus |
BO09025.complete Sequence
1312 bp (1312 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ638666
> BO09025.complete
GAAGTTATCAGTCGACATGGATTCGAAGTTCTTTAAACTGCTCCTGCTGG
GCGGCGCCGTGCGCTTCTACTTCTGTCGCACGCCGCTGGCTCCGATGATT
GGCAACCGAGTGGAGTTCGCGACACCTTTAAATTCACACAAGCGCATGCA
AGAGGGGATATTTCTTCTACAGAGTGGCATTGATCCCTATCTGGGCGACC
TGGTACACGAATCGCCGCTGATACTCAGCGCGCTCTCCGGATTGTTTCAA
AAATACCCGCAGTTTCTGCCGATATTCTACATAATCCTGGATATCTGCAC
GGCGGCCCTGCTTTATGCGATGAGTCTGAGATTCGTCAAGCAAAAGCAGG
ATCAGCAGGACAAGGAGCGAAAGGAGTATGCCAAGGATACGGAAGAGCTG
CAGTTTGGCCCGCTGGACAAGCTTGACATTCCGGAACTTGTGATCGTGGC
ATATCTTTTCAGTCCACTGACTGTTATGAGCTGCATTGGAATGACCTCCA
CCGTGATAAGCAATCTGTTCCTGGCTTTCTTTTTCTACTGCCTCGTGAAG
GGAATGCTCATTCCATGCCTTCTAGTCCTCGCGTTCGAAACTGTCCGCAG
CTTCTATCCCATTGTACTTATAGCACCACTGCTCCTGGTCTTTTCACGGA
ATTCGGTCAGGAGGGGTGTGGCTATAGCGGCGCTCTTTATCGTCAGTTGT
CTAATCGTGGCAGTTGCGAACTATTTTGTGCTGAACAGCTGGAACTTCCT
GGATGGAACGTTGGGTTTTATATTTTATTTCCGCGATCTACAGCCAAATA
TCGGTCTCTTCTGGTACTTTTTTACTGAAATGTTTGAGCACTTCCGCACC
ATGTTCCTAATCACATTCCAATTGAATGCCACCGTATTATACCTGGTGCC
ACTAAGTATTAAGCTGCGCAAGGAGCCCCTACTGCTAGCCACGGTATTGG
TGGCCCTTATGGCCGTTTTTAGGGCGTATCCCAGCCTGGGCGATGTCGGC
TTTTATCTGGCCTTGCTTCCGCTGTGGAAAAGATGTTGGAAATTCATGGC
CCATGGCTTTGTGGTCTTTACGTTCTTCCTGGTCACTCTATCTATGATGG
GAGCCCTTTGGCATTTGTGGATCTATGCAGGATCGGCAAATGCCAATTTC
TATTTCGGTGCCACTCTTGCGTTTTCCACTGGGCAGATATTTCTAATCAC
CGATCTGCTGTTCGCGCACGTTAAACGTGAGTTCTGCTTGTTCAATGGTC
AGAAGATTCTGATCGATGGCGAGGAAGCGAGGATAGTCTTAAAGGCAAGC
TTTCTAGACCAT
BO09025.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-RA | 1281 | CG13089-PA | 1..1278 | 17..1294 | 6390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-RA | 1478 | CG13089-RA | 58..1335 | 17..1294 | 6390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8515343..8515967 | 147..771 | 3125 | 100 | Plus |
2L | 23513712 | 2L | 8516030..8516301 | 772..1043 | 1360 | 100 | Plus |
2L | 23513712 | 2L | 8516362..8516612 | 1044..1294 | 1255 | 100 | Plus |
2L | 23513712 | 2L | 8515153..8515282 | 17..146 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:44:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 3472..3534 | 278..214 | 122 | 67.7 | Minus |
BO09025.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:49 Download gff for
BO09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-RA | 1..1281 | 17..1298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:45 Download gff for
BO09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-RA | 56..1341 | 17..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:14 Download gff for
BO09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..1335 | 17..1296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:50 Download gff for
BO09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13089-RA | 56..1341 | 17..1303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:53 Download gff for
BO09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PIG-U-RA | 58..1335 | 17..1296 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:53 Download gff for
BO09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
2L | 8516030..8516301 | 772..1043 | 100 | -> | Plus |
2L | 8516362..8516612 | 1044..1296 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:14 Download gff for
BO09025.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8516362..8516612 | 1044..1296 | 99 | | Plus |
arm_2L | 8515153..8515282 | 17..146 | 100 | -> | Plus |
arm_2L | 8515343..8515967 | 147..771 | 100 | -> | Plus |
arm_2L | 8516030..8516301 | 772..1043 | 100 | -> | Plus |
BO09025.pep Sequence
Translation from 16 to 1312
> BO09025.pep
MDSKFFKLLLLGGAVRFYFCRTPLAPMIGNRVEFATPLNSHKRMQEGIFL
LQSGIDPYLGDLVHESPLILSALSGLFQKYPQFLPIFYIILDICTAALLY
AMSLRFVKQKQDQQDKERKEYAKDTEELQFGPLDKLDIPELVIVAYLFSP
LTVMSCIGMTSTVISNLFLAFFFYCLVKGMLIPCLLVLAFETVRSFYPIV
LIAPLLLVFSRNSVRRGVAIAALFIVSCLIVAVANYFVLNSWNFLDGTLG
FIFYFRDLQPNIGLFWYFFTEMFEHFRTMFLITFQLNATVLYLVPLSIKL
RKEPLLLATVLVALMAVFRAYPSLGDVGFYLALLPLWKRCWKFMAHGFVV
FTFFLVTLSMMGALWHLWIYAGSANANFYFGATLAFSTGQIFLITDLLFA
HVKREFCLFNGQKILIDGEEARIVLKASFLDH
BO09025.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PIG-U-PA | 426 | CG13089-PA | 1..426 | 1..426 | 2200 | 100 | Plus |