Clone BO09026 Report

Search the DGRC for BO09026

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptIpod-RA
Protein status:BO09026.pep: validated full length
Sequenced Size:1081

Clone Sequence Records

BO09026.3prime Sequence

877 bp (856 high quality bases) assembled on 2006-01-10

> BO09026.3prime
ATGGTCTAGAAAGCTTGCCCAGGCCGAGGGTGGACCACCGCTGCTCCAGC
CACCGGAAGCGGCACCTCCGCCGGAGCTCCAGCCACCGGAAGCGGCACCT
CCGCCGGAGCTCCAGCCACCGGAAATGGCACCGCCACCAGAGCCCCAGCC
TCCCTTGGAGCCACCAGCGCTCTGGGATTGCTGCTGCTCCTGGACGCGCA
TCACCTTCAGGGTTCCCCGCTGCACCACGTGTCCGCTTTTGAAGAAGGCT
CCCTGCGCCTGATCGGCCTTCAAAATGATAGCCTTGCCCTTGGAGCCGAA
GGTGTTGATCAGCTGGCCATTGATGGCAGCCACATCAGCGGATCCACCAC
CGCCGCCGCCAAAGGAATCCTCCTGCAGCACCAACTGGATGATCTGCGGC
AGAATGGCATTGAACTGCTGGGTATCGAAGGAGGCGCCACCACCGTAACC
ATGTCCCGAAGCATACGACTGGCCGTAGGAGTGCGAATGGCCCTGATCAT
AGGAGTAGCCATTGGAGCCACTGGCAGCATGATAGGCAATGGGAGCAGCT
GGCGGAGCAGGGGCAGGAATCGAAATCGGAATGGGAACGGGGGCAGGAGC
TGGGACTGGAGCCGGGGCCTGTTCGATGATCTTGTATATCTGGGCCTGCT
GACCGCCATAGGATCCGTGACCACTGGCGTAGCCATGACCATGACCGTGA
CTGTAGCCATGACCTTCCGAGGACACAATGCCGCCGGCTGATCCTCCAGC
GTTGCTGTAGCCCTGACCCTCCTGCAGAATGACCTTGATGATCTGCGGTG
AGCCACCGTGTCCATGTCCGTAGCCATGTCCCTGCGCATACCCATGACCT
CCGCCGCCTCCCTGGGCATATGAATAT

BO09026.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG2961-PA 1050 Ipod-RA 189..1047 877..19 4295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
Ipod-RC 1871 CG2961-RC 831..1689 877..19 4295 100 Minus
Ipod-RB 1593 CG2961-RB 553..1411 877..19 4295 100 Minus
Ipod-RA 1328 CG2961-RA 288..1146 877..19 4295 100 Minus
Ipod-RC 1871 CG2961-RC 1558..1632 117..43 285 92 Minus
Ipod-RC 1871 CG2961-RC 1591..1665 150..76 285 92 Minus
Ipod-RB 1593 CG2961-RB 1280..1354 117..43 285 92 Minus
Ipod-RB 1593 CG2961-RB 1313..1387 150..76 285 92 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10231184..10232042 19..877 4295 100 Plus
X 23542271 X 10231208..10231282 76..150 285 92 Plus
X 23542271 X 10231241..10231315 43..117 285 92 Plus
Blast to na_te.dros performed on 2015-01-31 15:08:18 has no hits.

BO09026.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:39 Download gff for BO09026.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipod-PA 189..1050 18..877 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:15 Download gff for BO09026.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2961-PA 189..1050 18..877 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:12:14 Download gff for BO09026.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 288..1146 19..877 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:33:42 Download gff for BO09026.3prime
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 288..1146 19..877 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:33:42 Download gff for BO09026.3prime
Subject Subject Range Query Range Percent Splice Strand
X 10231184..10232042 19..877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:12:14 Download gff for BO09026.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10125217..10126075 19..877 100   Plus

BO09026.5prime Sequence

917 bp (846 high quality bases) assembled on 2006-01-10

> BO09026.5prime
GAAGTTATCAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCT
GCGCCTGCAATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGT
GGAGGAGGAGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAG
TTCGGGAGGCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTC
ACGGATATTCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAG
GGACATGGCTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGT
CATTCTGCAGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCG
GCATTGTGTCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGGC
TACGCCAGTGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAA
GATCATCGAACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCA
TTCCGATTTCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTAT
CATGCTGCCAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCATTCGCA
CTCCTACGGCCAGTCGTATGCTTCGGGACATGGTTACGGTGGTGGCGCCT
CCTTCGATACCCAGCAGTTCAATGCCATTCTGCCGCAGATCATCCAGTTG
GTGCTGCAGGAGGATTCCTTTGGCGGCGGCGGTGGTGGATCCGCTGATGT
GGCTGCCATCAATGGCCAGCTGATCAACACCTTCGGCTCCAAGGGCAAGG
CTATCATTTTGAAGGCCGATCAGGCGCANGGAGCCTTCTTCAAAAGCGGA
CACGTGGTGCAGCGGGGAACCCTGAANGTGATGCGCGTCCAGGAGCAGCA
GCAATCCAGAGCGCTGG

BO09026.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2961-PA 1050 Ipod-RA 1..891 17..907 4417 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
Ipod-RC 1871 CG2961-RC 643..1544 17..917 4463 99.7 Plus
Ipod-RB 1593 CG2961-RB 365..1266 17..917 4463 99.7 Plus
Ipod-RA 1328 CG2961-RA 100..1001 17..917 4463 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10231329..10232226 917..21 4418 99.7 Minus
Blast to na_te.dros performed on 2015-02-02 09:43:27 has no hits.

BO09026.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:40 Download gff for BO09026.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipod-PA 1..902 17..917 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:17 Download gff for BO09026.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2961-PA 1..902 17..917 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:49 Download gff for BO09026.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 97..1001 14..917 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:19 Download gff for BO09026.5prime
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 97..1001 14..917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:19 Download gff for BO09026.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10231329..10232230 16..917 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:49 Download gff for BO09026.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10125362..10126263 16..917 99   Minus

BO09026.complete Sequence

1081 bp (1081 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631355

> BO09026.complete
GAAGTTATCAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCT
GCGCCTGCAATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGT
GGAGGAGGAGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAG
TTCGGGAGGCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTC
ACGGATATTCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAG
GGACATGGCTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGT
CATTCTGCAGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCG
GCATTGTGTCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGGC
TACGCCAGTGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAA
GATCATCGAACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCA
TTCCGATTTCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTAT
CATGCTGCCAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCATTCGCA
CTCCTACGGCCAGTCGTATGCTTCGGGACATGGTTACGGTGGTGGCGCCT
CCTTCGATACCCAGCAGTTCAATGCCATTCTGCCGCAGATCATCCAGTTG
GTGCTGCAGGAGGATTCCTTTGGCGGCGGCGGTGGTGGATCCGCTGATGT
GGCTGCCATCAATGGCCAGCTGATCAACACCTTCGGCTCCAAGGGCAAGG
CTATCATTTTGAAGGCCGATCAGGCGCAGGGAGCCTTCTTCAAAAGCGGA
CACGTGGTGCAGCGGGGAACCCTGAAGGTGATGCGCGTCCAGGAGCAGCA
GCAATCCCAGAGCGCTGGTGGCTCCAAGGGAGGCTGGGGCTCTGGTGGCG
GTGCCATTTCCGGTGGCTGGAGCTCCGGCGGAGGTGCCGCTTCCGGTGGC
TGGAGCTCCGGCGGAGGTGCCGCTTCCGGTGGCTGGAGCAGCGGTGGTCC
ACCCTCGGCCTGGGCAAGCTTTCTAGACCAT

BO09026.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
Ipod-RC 1050 CG2961-PC 1..1047 17..1063 5235 100 Plus
Ipod-RB 1050 CG2961-PB 1..1047 17..1063 5235 100 Plus
Ipod-RA 1050 CG2961-PA 1..1047 17..1063 5235 100 Plus
Ipod-RC 1050 CG2961-PC 916..990 965..1039 285 92 Plus
Ipod-RC 1050 CG2961-PC 949..1023 932..1006 285 92 Plus
Ipod-RB 1050 CG2961-PB 916..990 965..1039 285 92 Plus
Ipod-RB 1050 CG2961-PB 949..1023 932..1006 285 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Ipod-RC 1871 CG2961-RC 643..1689 17..1063 5235 100 Plus
Ipod-RB 1593 CG2961-RB 365..1411 17..1063 5235 100 Plus
Ipod-RA 1328 CG2961-RA 100..1146 17..1063 5235 100 Plus
Ipod-RC 1871 CG2961-RC 1558..1632 965..1039 285 92 Plus
Ipod-RC 1871 CG2961-RC 1591..1665 932..1006 285 92 Plus
Ipod-RB 1593 CG2961-RB 1280..1354 965..1039 285 92 Plus
Ipod-RB 1593 CG2961-RB 1313..1387 932..1006 285 92 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10231184..10232226 1063..21 5215 100 Minus
X 23542271 X 10231208..10231282 1006..932 285 92 Minus
X 23542271 X 10231241..10231315 1039..965 285 92 Minus
Blast to na_te.dros performed on 2014-11-27 07:15:42 has no hits.

BO09026.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:51 Download gff for BO09026.complete
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 1..1050 17..1064 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:46 Download gff for BO09026.complete
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 94..1143 14..1063 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:16 Download gff for BO09026.complete
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 100..1146 17..1065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:51 Download gff for BO09026.complete
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 94..1143 14..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:52 Download gff for BO09026.complete
Subject Subject Range Query Range Percent Splice Strand
Ipod-RA 100..1146 17..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:52 Download gff for BO09026.complete
Subject Subject Range Query Range Percent Splice Strand
X 10231182..10232229 17..1065 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:16 Download gff for BO09026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10125215..10126262 17..1065 99   Minus

BO09026.pep Sequence

Translation from 16 to 1081

> BO09026.pep
MKVFICLLATICACNATFLSLLGGGGGGGGGGGSKTTYNVIATPSSGGGG
GGGGGGGGGGGHGYSYAQGGGGGHGYAQGHGYGHGHGGSPQIIKVILQEG
QGYSNAGGSAGGIVSSEGHGYSHGHGHGYASGHGSYGGQQAQIYKIIEQA
PAPVPAPAPVPIPISIPAPAPPAAPIAYHAASGSNGYSYDQGHSHSYGQS
YASGHGYGGGASFDTQQFNAILPQIIQLVLQEDSFGGGGGGSADVAAING
QLINTFGSKGKAIILKADQAQGAFFKSGHVVQRGTLKVMRVQEQQQSQSA
GGSKGGWGSGGGAISGGWSSGGGAASGGWSSGGGAASGGWSSGGPPSAWA
SFLDH

BO09026.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ipod-PC 349 CG2961-PC 1..349 1..349 1891 100 Plus
Ipod-PB 349 CG2961-PB 1..349 1..349 1891 100 Plus
Ipod-PA 349 CG2961-PA 1..349 1..349 1891 100 Plus
CG12523-PB 250 CG12523-PB 12..246 42..344 280 31.4 Plus
CG15731-PA 319 CG15731-PA 1..236 1..210 268 33.6 Plus
CG12523-PB 250 CG12523-PB 1..244 1..212 249 36.5 Plus
CG12523-PB 250 CG12523-PB 2..244 35..351 230 28.9 Plus