Clone Sequence Records
BO09026.3prime Sequence
877 bp (856 high quality bases) assembled on 2006-01-10
> BO09026.3prime
ATGGTCTAGAAAGCTTGCCCAGGCCGAGGGTGGACCACCGCTGCTCCAGC
CACCGGAAGCGGCACCTCCGCCGGAGCTCCAGCCACCGGAAGCGGCACCT
CCGCCGGAGCTCCAGCCACCGGAAATGGCACCGCCACCAGAGCCCCAGCC
TCCCTTGGAGCCACCAGCGCTCTGGGATTGCTGCTGCTCCTGGACGCGCA
TCACCTTCAGGGTTCCCCGCTGCACCACGTGTCCGCTTTTGAAGAAGGCT
CCCTGCGCCTGATCGGCCTTCAAAATGATAGCCTTGCCCTTGGAGCCGAA
GGTGTTGATCAGCTGGCCATTGATGGCAGCCACATCAGCGGATCCACCAC
CGCCGCCGCCAAAGGAATCCTCCTGCAGCACCAACTGGATGATCTGCGGC
AGAATGGCATTGAACTGCTGGGTATCGAAGGAGGCGCCACCACCGTAACC
ATGTCCCGAAGCATACGACTGGCCGTAGGAGTGCGAATGGCCCTGATCAT
AGGAGTAGCCATTGGAGCCACTGGCAGCATGATAGGCAATGGGAGCAGCT
GGCGGAGCAGGGGCAGGAATCGAAATCGGAATGGGAACGGGGGCAGGAGC
TGGGACTGGAGCCGGGGCCTGTTCGATGATCTTGTATATCTGGGCCTGCT
GACCGCCATAGGATCCGTGACCACTGGCGTAGCCATGACCATGACCGTGA
CTGTAGCCATGACCTTCCGAGGACACAATGCCGCCGGCTGATCCTCCAGC
GTTGCTGTAGCCCTGACCCTCCTGCAGAATGACCTTGATGATCTGCGGTG
AGCCACCGTGTCCATGTCCGTAGCCATGTCCCTGCGCATACCCATGACCT
CCGCCGCCTCCCTGGGCATATGAATAT
BO09026.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2961-PA | 1050 | Ipod-RA | 189..1047 | 877..19 | 4295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipod-RC | 1871 | CG2961-RC | 831..1689 | 877..19 | 4295 | 100 | Minus |
Ipod-RB | 1593 | CG2961-RB | 553..1411 | 877..19 | 4295 | 100 | Minus |
Ipod-RA | 1328 | CG2961-RA | 288..1146 | 877..19 | 4295 | 100 | Minus |
Ipod-RC | 1871 | CG2961-RC | 1558..1632 | 117..43 | 285 | 92 | Minus |
Ipod-RC | 1871 | CG2961-RC | 1591..1665 | 150..76 | 285 | 92 | Minus |
Ipod-RB | 1593 | CG2961-RB | 1280..1354 | 117..43 | 285 | 92 | Minus |
Ipod-RB | 1593 | CG2961-RB | 1313..1387 | 150..76 | 285 | 92 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10231184..10232042 | 19..877 | 4295 | 100 | Plus |
X | 23542271 | X | 10231208..10231282 | 76..150 | 285 | 92 | Plus |
X | 23542271 | X | 10231241..10231315 | 43..117 | 285 | 92 | Plus |
Blast to na_te.dros performed on 2015-01-31 15:08:18 has no hits.
BO09026.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:39 Download gff for
BO09026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-PA | 189..1050 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:15 Download gff for
BO09026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2961-PA | 189..1050 | 18..877 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:12:14 Download gff for
BO09026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 288..1146 | 19..877 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:33:42 Download gff for
BO09026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 288..1146 | 19..877 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:33:42 Download gff for
BO09026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10231184..10232042 | 19..877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:12:14 Download gff for
BO09026.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10125217..10126075 | 19..877 | 100 | | Plus |
BO09026.5prime Sequence
917 bp (846 high quality bases) assembled on 2006-01-10
> BO09026.5prime
GAAGTTATCAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCT
GCGCCTGCAATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGT
GGAGGAGGAGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAG
TTCGGGAGGCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTC
ACGGATATTCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAG
GGACATGGCTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGT
CATTCTGCAGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCG
GCATTGTGTCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGGC
TACGCCAGTGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAA
GATCATCGAACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCA
TTCCGATTTCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTAT
CATGCTGCCAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCATTCGCA
CTCCTACGGCCAGTCGTATGCTTCGGGACATGGTTACGGTGGTGGCGCCT
CCTTCGATACCCAGCAGTTCAATGCCATTCTGCCGCAGATCATCCAGTTG
GTGCTGCAGGAGGATTCCTTTGGCGGCGGCGGTGGTGGATCCGCTGATGT
GGCTGCCATCAATGGCCAGCTGATCAACACCTTCGGCTCCAAGGGCAAGG
CTATCATTTTGAAGGCCGATCAGGCGCANGGAGCCTTCTTCAAAAGCGGA
CACGTGGTGCAGCGGGGAACCCTGAANGTGATGCGCGTCCAGGAGCAGCA
GCAATCCAGAGCGCTGG
BO09026.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2961-PA | 1050 | Ipod-RA | 1..891 | 17..907 | 4417 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipod-RC | 1871 | CG2961-RC | 643..1544 | 17..917 | 4463 | 99.7 | Plus |
Ipod-RB | 1593 | CG2961-RB | 365..1266 | 17..917 | 4463 | 99.7 | Plus |
Ipod-RA | 1328 | CG2961-RA | 100..1001 | 17..917 | 4463 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10231329..10232226 | 917..21 | 4418 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:43:27 has no hits.
BO09026.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:40 Download gff for
BO09026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:17 Download gff for
BO09026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2961-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:49 Download gff for
BO09026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 97..1001 | 14..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:33:19 Download gff for
BO09026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 97..1001 | 14..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:33:19 Download gff for
BO09026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10231329..10232230 | 16..917 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:49 Download gff for
BO09026.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10125362..10126263 | 16..917 | 99 | | Minus |
BO09026.complete Sequence
1081 bp (1081 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631355
> BO09026.complete
GAAGTTATCAGTCGACATGAAGGTCTTCATCTGCCTGTTGGCCACCATCT
GCGCCTGCAATGCCACCTTCCTGTCCCTTCTGGGCGGCGGCGGCGGTGGT
GGAGGAGGAGGAGGTAGCAAGACCACTTACAATGTGATAGCCACGCCCAG
TTCGGGAGGCGGCGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGAGGTC
ACGGATATTCATATGCCCAGGGAGGCGGCGGAGGTCATGGGTATGCGCAG
GGACATGGCTACGGACATGGACACGGTGGCTCACCGCAGATCATCAAGGT
CATTCTGCAGGAGGGTCAGGGCTACAGCAACGCTGGAGGATCAGCCGGCG
GCATTGTGTCCTCGGAAGGTCATGGCTACAGTCACGGTCATGGTCATGGC
TACGCCAGTGGTCACGGATCCTATGGCGGTCAGCAGGCCCAGATATACAA
GATCATCGAACAGGCCCCGGCTCCAGTCCCAGCTCCTGCCCCCGTTCCCA
TTCCGATTTCGATTCCTGCCCCTGCTCCGCCAGCTGCTCCCATTGCCTAT
CATGCTGCCAGTGGCTCCAATGGCTACTCCTATGATCAGGGCCATTCGCA
CTCCTACGGCCAGTCGTATGCTTCGGGACATGGTTACGGTGGTGGCGCCT
CCTTCGATACCCAGCAGTTCAATGCCATTCTGCCGCAGATCATCCAGTTG
GTGCTGCAGGAGGATTCCTTTGGCGGCGGCGGTGGTGGATCCGCTGATGT
GGCTGCCATCAATGGCCAGCTGATCAACACCTTCGGCTCCAAGGGCAAGG
CTATCATTTTGAAGGCCGATCAGGCGCAGGGAGCCTTCTTCAAAAGCGGA
CACGTGGTGCAGCGGGGAACCCTGAAGGTGATGCGCGTCCAGGAGCAGCA
GCAATCCCAGAGCGCTGGTGGCTCCAAGGGAGGCTGGGGCTCTGGTGGCG
GTGCCATTTCCGGTGGCTGGAGCTCCGGCGGAGGTGCCGCTTCCGGTGGC
TGGAGCTCCGGCGGAGGTGCCGCTTCCGGTGGCTGGAGCAGCGGTGGTCC
ACCCTCGGCCTGGGCAAGCTTTCTAGACCAT
BO09026.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipod-RC | 1050 | CG2961-PC | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Ipod-RB | 1050 | CG2961-PB | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Ipod-RA | 1050 | CG2961-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Ipod-RC | 1050 | CG2961-PC | 916..990 | 965..1039 | 285 | 92 | Plus |
Ipod-RC | 1050 | CG2961-PC | 949..1023 | 932..1006 | 285 | 92 | Plus |
Ipod-RB | 1050 | CG2961-PB | 916..990 | 965..1039 | 285 | 92 | Plus |
Ipod-RB | 1050 | CG2961-PB | 949..1023 | 932..1006 | 285 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipod-RC | 1871 | CG2961-RC | 643..1689 | 17..1063 | 5235 | 100 | Plus |
Ipod-RB | 1593 | CG2961-RB | 365..1411 | 17..1063 | 5235 | 100 | Plus |
Ipod-RA | 1328 | CG2961-RA | 100..1146 | 17..1063 | 5235 | 100 | Plus |
Ipod-RC | 1871 | CG2961-RC | 1558..1632 | 965..1039 | 285 | 92 | Plus |
Ipod-RC | 1871 | CG2961-RC | 1591..1665 | 932..1006 | 285 | 92 | Plus |
Ipod-RB | 1593 | CG2961-RB | 1280..1354 | 965..1039 | 285 | 92 | Plus |
Ipod-RB | 1593 | CG2961-RB | 1313..1387 | 932..1006 | 285 | 92 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10231184..10232226 | 1063..21 | 5215 | 100 | Minus |
X | 23542271 | X | 10231208..10231282 | 1006..932 | 285 | 92 | Minus |
X | 23542271 | X | 10231241..10231315 | 1039..965 | 285 | 92 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:15:42 has no hits.
BO09026.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:51 Download gff for
BO09026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 1..1050 | 17..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:46 Download gff for
BO09026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 94..1143 | 14..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:16 Download gff for
BO09026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 100..1146 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:51 Download gff for
BO09026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 94..1143 | 14..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:52 Download gff for
BO09026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ipod-RA | 100..1146 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:52 Download gff for
BO09026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10231182..10232229 | 17..1065 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:16 Download gff for
BO09026.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10125215..10126262 | 17..1065 | 99 | | Minus |
BO09026.pep Sequence
Translation from 16 to 1081
> BO09026.pep
MKVFICLLATICACNATFLSLLGGGGGGGGGGGSKTTYNVIATPSSGGGG
GGGGGGGGGGGHGYSYAQGGGGGHGYAQGHGYGHGHGGSPQIIKVILQEG
QGYSNAGGSAGGIVSSEGHGYSHGHGHGYASGHGSYGGQQAQIYKIIEQA
PAPVPAPAPVPIPISIPAPAPPAAPIAYHAASGSNGYSYDQGHSHSYGQS
YASGHGYGGGASFDTQQFNAILPQIIQLVLQEDSFGGGGGGSADVAAING
QLINTFGSKGKAIILKADQAQGAFFKSGHVVQRGTLKVMRVQEQQQSQSA
GGSKGGWGSGGGAISGGWSSGGGAASGGWSSGGGAASGGWSSGGPPSAWA
SFLDH
BO09026.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ipod-PC | 349 | CG2961-PC | 1..349 | 1..349 | 1891 | 100 | Plus |
Ipod-PB | 349 | CG2961-PB | 1..349 | 1..349 | 1891 | 100 | Plus |
Ipod-PA | 349 | CG2961-PA | 1..349 | 1..349 | 1891 | 100 | Plus |
CG12523-PB | 250 | CG12523-PB | 12..246 | 42..344 | 280 | 31.4 | Plus |
CG15731-PA | 319 | CG15731-PA | 1..236 | 1..210 | 268 | 33.6 | Plus |
CG12523-PB | 250 | CG12523-PB | 1..244 | 1..212 | 249 | 36.5 | Plus |
CG12523-PB | 250 | CG12523-PB | 2..244 | 35..351 | 230 | 28.9 | Plus |