Clone Sequence Records
BO09029.3prime Sequence
911 bp (797 high quality bases) assembled on 2006-01-10
> BO09029.3prime
ATGGTCTAGAAAGCTTGCCTGATCGTCCGCGTTTGTGAGATGCAGATTTG
CCGATGGATGCAGGCCGAGTTCCTTCAGGGAGCTATCGTTATGCTCCGCC
TCCAGGAATTTTCGCGGGAAGGCGCAAATGAGCTTGTAGCCGTCCTGAGG
GATGTGCTTGTGCGTCTGGCTGATGTACAGCCGCAAAGTTTGCAGTTTGG
TGTCCGAGGGCCAGCGCAGCTGGACCATCTCATCTGTTCCGGCGGCGTTG
AGCAGGCGCAGTTTAAGGGCAGTCAATTCAGTCTTGGCCTCGCCCAAGTG
ATTCTCGAAAGAGGCGGCGGCCACACCCTTGAGCTCCTCATCATCGAACT
CCTCAAGGCTCTCATTATCGCTGGCTCCATCGGGACTATCGTTTTTCTGG
TTGCCTTCGCCTCCGCCACCACCGTTCTCGTTTATGGAATTCTTGATGGC
CAACTCAAGCTGCTCCTCTTCGGTTAGCTCCAGAACCTTGGCACGTTTCT
TGGGCATTTCCTTCGAACTGGCTGTCGAGGAGCACGAGGCCTCCGGATCG
GGCACCTCGTCATCATCGATGTACGTGGCCGAACGCTTCGAGGTGCCTGG
TGCATCCTCCTGAATAAAGTCACGGTGCTCCTTCAAGAACTGCCTCAAAT
CGGGAAGAATATTCTCCAGCTTCGGCTCTGCGCTGCGCCACACTTCCTCA
CCAGTACGGGGATCGATCACGCATATGTAAGGCAGGGTGGCGCAGTGGTA
GAAGGCCACAAAGCGGCGTCCTTCCGAGGTGTCGTTGTCCACCTGCCAGA
AGGTGAACTGGCGACGTATCAGTTTCTTAAGCTCCTTGTCCGACCAGACA
TCGCGGGTCAAAGTCTGCGACTGAAAGTTTTCGTCCTGCACGTTGACCAG
CAACCAGCGCT
BO09029.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-PC | 1491 | CG8892-RC | 596..1488 | 911..19 | 4440 | 99.8 | Minus |
| CG8892-PB | 1491 | CG8892-RB | 596..1488 | 911..19 | 4440 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1952 | CG8892-RD | 910..1802 | 911..19 | 4450 | 99.9 | Minus |
| CG8892-RE | 2075 | CG8892-RE | 1009..1901 | 911..19 | 4450 | 99.9 | Minus |
| CG8892-RB | 1775 | CG8892-RB | 733..1625 | 911..19 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4979687..4980579 | 19..911 | 4450 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:24:03 has no hits.
BO09029.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:45 Download gff for
BO09029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 596..1491 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:23 Download gff for
BO09029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 596..1491 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:51:20 Download gff for
BO09029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 733..1636 | 9..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:40 Download gff for
BO09029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 733..1636 | 9..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:40 Download gff for
BO09029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4979676..4980579 | 9..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:51:20 Download gff for
BO09029.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4979676..4980579 | 9..911 | 99 | | Plus |
BO09029.5prime Sequence
889 bp (810 high quality bases) assembled on 2006-01-10
> BO09029.5prime
GAAGTTATCAGTCGACATGTCCACTACCGAGGCGCCGGATGCGCTGGTGG
AGCAGGTCCGCGAGGTGACCGCTTGCTCCATGGACGAGGCCAAATATTAC
TTGTCTGCCTGTGCCAACGATGTGTCCGCCGCAGTGGCTCTGTTTTTCGA
ACAGGCAGCCTCCACATCCACGCCATCGGGCTCCAGTGCCGGTGCTGCGG
CTGAATCGCTACCCGTTTTGGACGACGAGGATGAGGTAAGGGCGCCAATT
GCCCCGGTCCGTGAGCAATTGATCCTGCCCGAGGACGACAATTTTTTTGC
GTCGGGGAGCAGTAGCCGGCTGTCGCGTGTGACGCAGCGCGTCAAGGTTC
ATCCCCTGCGGGACTTTGCCCGCGAGGGCGCTCTAATGGAGGAGCAGCTG
CAGGCCACTGGCGTCTATGCCGATCCCAATCGAATCCGTCGCGGACGGGC
CGCCCAGATGGTGGTGGCCGGTCAGGCCATGGCACTTAACAGACGGTCCA
CAACGGACACGGCAACCAGCACATCCCGCCTCGGAGACCTATTCCGCCCG
CCAACGGACATACTCTACTCCGGATCACTAACCGCTGCCAGGGAGTTTGC
CACCAAGCGTCAGCGCTGGTTGCTGGTCAACGTGCAGGACGAAAACTTTC
AGTCGCAGACTTTGAACCGCGATGTCTGGTCGGACAAGGAGCTTAAGAAA
CTGATACGTCGCCAGTTCACCTTCTGGCAGGTGGACAACGACACCTCGGA
AGGACGCCGCTTTGTGGCCTTCTACCACTGCGCCACCCTGCCTTACATAT
GCGTGATCGATCCCCGTACTGGTGAGGAAGTGTGGCGCAGCGCAGAGCCG
AAGCTGGAGAATATTCTTCCCGATTTGAGGCAGTTCTTG
BO09029.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-PC | 1491 | CG8892-RC | 1..873 | 17..889 | 4365 | 100 | Plus |
| CG8892-PB | 1491 | CG8892-RB | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1952 | CG8892-RD | 314..1187 | 16..889 | 4370 | 100 | Plus |
| CG8892-RE | 2075 | CG8892-RE | 413..1286 | 16..889 | 4370 | 100 | Plus |
| CG8892-RB | 1775 | CG8892-RB | 137..1010 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4980302..4981175 | 889..16 | 4370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:50:54 has no hits.
BO09029.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:46 Download gff for
BO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:25 Download gff for
BO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-PB | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:18:19 Download gff for
BO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 131..1010 | 9..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:11:59 Download gff for
BO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 131..1010 | 9..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:11:59 Download gff for
BO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4980302..4981181 | 9..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:18:19 Download gff for
BO09029.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4980302..4981181 | 9..889 | 99 | | Minus |
BO09029.complete Sequence
1522 bp (1522 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631356
> BO09029.complete
GAAGTTATCAGTCGACATGTCCACTACCGAGGCGCCGGATGCGCTGGTGG
AGCAGGTCCGCGAGGTGACCGCTTGCTCCATGGACGAGGCCAAATATTAC
TTGTCTGCCTGTGCCAACGATGTGTCCGCCGCAGTGGCTCTGTTTTTCGA
ACAGGCAGCCTCCACATCCACGCCATCGGGCTCCAGTGCCGGTGCTGCGG
CTGAATCGCTACCCGTTTTGGACGACGAGGATGAGGTAAGGGCGCCAATT
GCCCCGGTCCGTGAGCAATTGATCCTGCCCGAGGACGACAATTTTTTTGC
GTCGGGGAGCAGTAGCCGGCTGTCGCGTGTGACGCAGCGCGTCAAGGTTC
ATCCCCTGCGGGACTTTGCCCGCGAGGGCGCTCTAATGGAGGAGCAGCTG
CAGGCCACTGGCGTCTATGCCGATCCCAATCGAATCCGTCGCGGACGGGC
CGCCCAGATGGTGGTGGCCGGTCAGGCCATGGCACTTAACAGACGGTCCA
CAACGGACACGGCAACCAGCACATCCCGCCTCGGAGACCTATTCCGCCCG
CCAACGGACATACTCTACTCCGGATCACTAACCGCTGCCAGGGAGTTTGC
CACCAAGCGTCAGCGCTGGTTGCTGGTCAACGTGCAGGACGAAAACTTTC
AGTCGCAGACTTTGAACCGCGATGTCTGGTCGGACAAGGAGCTTAAGAAA
CTGATACGTCGCCAGTTCACCTTCTGGCAGGTGGACAACGACACCTCGGA
AGGACGCCGCTTTGTGGCCTTCTACCACTGCGCCACCCTGCCTTACATAT
GCGTGATCGATCCCCGTACTGGTGAGGAAGTGTGGCGCAGCGCAGAGCCG
AAGCTGGAGAATATTCTTCCCGATTTGAGGCAGTTCTTGAAGGAGCACCG
TGACTTTATTCAGGAGGATGCACCAGGCACCTCGAAGCGTTCGGCCACGT
ACATCGATGATGACGAGGTGCCCGATCCGGAGGCCTCGTGCTCCTCGACA
GCCAGTTCGAAGGAAATGCCCAAGAAACGTGCCAAGGTTCTGGAGCTAAC
CGAAGAGGAGCAGCTTGAGTTGGCCATCAAGAATTCCATAAACGAGAACG
GTGGTGGCGGAGGCGAAGGCAACCAGAAAAACGATAGTCCCGATGGAGCC
AGCGATAATGAGAGCCTTGAGGAGTTCGATGATGAGGAGCTCAAGGGTGT
GGCCGCCGCCTCTTTCGAGAATCACTTGGGCGAGGCCAAGACTGAATTGA
CTGCCCTTAAACTGCGCCTGCTCAACGCCGCCGGAACAGATGAGATGGTC
CAGCTGCGCTGGCCCTCGGACACCAAACTGCAAACTTTGCGGCTGTACAT
CAGCCAGACGCACAAGCACATCCCTCAGGACGGCTACAAGCTCATTTGCG
CCTTCCCGCGAAAATTCCTGGAGGCGGAGCATAACGATAGCTCCCTGAAG
GAACTCGGCCTGCATCCATCGGCAAATCTGCATCTCACAAACGCGGACGA
TCAGGCAAGCTTTCTAGACCAT
BO09029.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1491 | CG8892-PD | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| CG8892-RE | 1491 | CG8892-PE | 1..1488 | 17..1504 | 7440 | 100 | Plus |
| CG8892-RB | 1491 | CG8892-PB | 1..1488 | 17..1504 | 7440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-RD | 1952 | CG8892-RD | 314..1802 | 16..1504 | 7445 | 100 | Plus |
| CG8892-RE | 2075 | CG8892-RE | 413..1901 | 16..1504 | 7445 | 100 | Plus |
| CG8892-RB | 1775 | CG8892-RB | 137..1625 | 16..1504 | 7445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4979687..4981175 | 1504..16 | 7445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:34:39 has no hits.
BO09029.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:52 Download gff for
BO09029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 1..1491 | 17..1505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:48 Download gff for
BO09029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 195..1700 | 9..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:28 Download gff for
BO09029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 138..1625 | 17..1506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:52 Download gff for
BO09029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 195..1700 | 9..1514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:42 Download gff for
BO09029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8892-RB | 138..1625 | 17..1506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:42 Download gff for
BO09029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4979685..4981174 | 17..1506 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:28 Download gff for
BO09029.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4979685..4981174 | 17..1506 | 99 | | Minus |
BO09029.pep Sequence
Translation from 16 to 1522
> BO09029.pep
MSTTEAPDALVEQVREVTACSMDEAKYYLSACANDVSAAVALFFEQAAST
STPSGSSAGAAAESLPVLDDEDEVRAPIAPVREQLILPEDDNFFASGSSS
RLSRVTQRVKVHPLRDFAREGALMEEQLQATGVYADPNRIRRGRAAQMVV
AGQAMALNRRSTTDTATSTSRLGDLFRPPTDILYSGSLTAAREFATKRQR
WLLVNVQDENFQSQTLNRDVWSDKELKKLIRRQFTFWQVDNDTSEGRRFV
AFYHCATLPYICVIDPRTGEEVWRSAEPKLENILPDLRQFLKEHRDFIQE
DAPGTSKRSATYIDDDEVPDPEASCSSTASSKEMPKKRAKVLELTEEEQL
ELAIKNSINENGGGGGEGNQKNDSPDGASDNESLEEFDDEELKGVAAASF
ENHLGEAKTELTALKLRLLNAAGTDEMVQLRWPSDTKLQTLRLYISQTHK
HIPQDGYKLICAFPRKFLEAEHNDSSLKELGLHPSANLHLTNADDQASFL
DH
BO09029.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8892-PD | 496 | CG8892-PD | 1..496 | 1..496 | 2542 | 100 | Plus |
| CG8892-PE | 496 | CG8892-PE | 1..496 | 1..496 | 2542 | 100 | Plus |
| CG8892-PB | 496 | CG8892-PB | 1..496 | 1..496 | 2542 | 100 | Plus |
| CG8892-PC | 496 | CG8892-PC | 1..496 | 1..496 | 2542 | 100 | Plus |
