Clone BO09030 Report

Search the DGRC for BO09030

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:90
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG2921-RA
Protein status:BO09030.pep: Imported from assembly
Sequenced Size:1468

Clone Sequence Records

BO09030.3prime Sequence

934 bp (901 high quality bases) assembled on 2006-01-10

> BO09030.3prime
ATGGTCTAGAAAGCTTGCATAGCCAAATTCACGAGCTCCGTCAACGAACT
GAATGACCCCATAACTGCCCGAGACCATCCAGCGCGGATCCTTCACACTC
AGCGCCTGGCCAACGCCCTCGGGCAGGCCGGAGATAACTTCGCTCTTGAC
CCGCCGCAGCACACAAATGTTGCTGGGAAGGAAGCCACGGAGGCAGGTGC
TGAGTTCCTGGGTGGGGTCCCAGCAGACGTCCTGCAGCAGCTTGCGATAG
TTGAGCTCTCCCTTGAAGACCACCAGCTTGGATAGCTGCAGGGAACTATA
CAAATCTGGATCCATTTGCGCCATGCTGTAAAACGAATGTGGTGATGTCC
AGAAATGCGAGATTGGCGCCAGTTCGAACTTTCCCTCATCGATGAATTGT
AGGAACTTCTTTCCTATCAGACTTATAATGTAGTCCGCATGCTCACTCAA
GTACTCCAGCGTCCACTTGAAGTCCCGCTCCGTCACATCGGTGACAAACC
AAGGGTGGGCCTTCACATGGAACCGCACCTTGTCGGCCAGTCCCTTCTCA
ATCATGAACTCAGCCAGTATAAAGTCGCTAAAGAGTTCGTAGCCTGCATT
GTCCAGTATAAAGTCCACCTGCTTATGCTTCTTCAGTTTAGGGTTTTCCA
AGCACCTCCAAATCTCCGCTGCCTGGTTAACCAGTACGCGCTCATCGGTG
TTTGCCACTTTCTCCAGCACCTGGCGGTTCGATTGCTTTACTGTATCCGT
GTCGGTCGCCACATCATTGCAGTTGCTCCACATGTTGATCCTCAGAAGCT
CGTCGAACACCTCCACGCTGTTCTCTGATCGTCGTGTGTACTTGGTCAGG
GCCAGTATATCATCAATGCTATCCGTTAGCGCCTGCTCCTTGACTTTGGC
AAAGAAATCGTATGACTTCAGAAATACGCTGTTT

BO09030.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 1437 CG2921-RA 519..1434 934..19 4580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1597 CG2921-RA 622..1537 934..19 4580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22073967..22074575 326..934 3045 100 Plus
2R 25286936 2R 22073598..22073907 19..328 1550 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:46:15 has no hits.

BO09030.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:47 Download gff for BO09030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 519..1437 15..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:26 Download gff for BO09030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 519..1437 15..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:30:10 Download gff for BO09030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 622..1547 7..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:01 Download gff for BO09030.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 622..1547 7..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:01 Download gff for BO09030.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22073588..22073904 7..325 98 <- Plus
2R 22073967..22074575 326..934 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:30:10 Download gff for BO09030.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17961093..17961409 7..325 98 <- Plus
arm_2R 17961472..17962080 326..934 100   Plus

BO09030.5prime Sequence

916 bp (818 high quality bases) assembled on 2006-01-10

> BO09030.5prime
GAAGTTATCAGTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACA
GCGTGGAGGTGTTCGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGC
AATGATGTGGCGACCGACACGGATACAGTAAAGCAATCGAACCGCCAGGT
GCTGGAGAAAGTGGCAAACACCGATGAGCGCGTACTGGTTAACCAGGCAG
CGGAGATTTGGAGGTGCTTGNAAAACCCTAAACTGAAGAAGCATAAGCAG
GTGGACTTTATACTGGACAATGCAGGCTACGAACTCTTTAGCGACTTTAT
ACTGGCTGAGTTCATG

BO09030.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 1437 CG2921-RA 1..900 17..916 4481 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1597 CG2921-RA 104..1003 17..916 4489 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22074194..22074701 916..409 2529 99.8 Minus
2R 25286936 2R 22074929..22075205 293..17 1385 100 Minus
2R 25286936 2R 22074755..22074872 410..293 590 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:47:32 has no hits.

BO09030.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:49 Download gff for BO09030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 1..900 17..916 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:28 Download gff for BO09030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-PA 1..900 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:32 Download gff for BO09030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 97..1003 10..916 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:04 Download gff for BO09030.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 97..1003 10..916 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:04 Download gff for BO09030.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22074194..22074699 411..916 99 <- Minus
2R 22074755..22074871 294..410 100 <- Minus
2R 22074929..22075212 10..293 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:32 Download gff for BO09030.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17961699..17962204 411..916 99 <- Minus
arm_2R 17962260..17962376 294..410 100 <- Minus
arm_2R 17962434..17962717 10..293 98   Minus

BO09030.complete Sequence

1468 bp assembled on 2008-08-14

GenBank Submission: FJ631357

> BO09030.complete
GAAGTTATCAGTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACA
GCGTGGAGGTGTTCGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGC
AATGATGTGGCGACCGACACGGATACAGTAAAGCAATCGAACCGCCAGGT
GCTGGAGAAAGTGGCAAACACCGATGAGCGCGTACTGGTTAACCAGGCAG
CGGAGATTTGGAGGTGCTTGGAAAACCCTAAACTGAAGAAGCATAAGCAG
GTGGACTTTATACTGGACAATGCAGGCTACGAACTCTTTAGCGACTTTAT
ACTGGCTGAGTTCATGATTGAGAAGGGACTGGCCGACAAGGTGCGGTTCC
ATGTGAAGGCCCACCCTTGGTTTGTCACCGATGTGACGGAGCGGGACTTC
AAGTGGACGCTGGAGTACTTGAGTGAGCATGCGGACTACATTATAAGTCT
GATAGGAAAGAAGTTCCTACAATTCATCGATGAGGGAAAGTTCGAACTGG
CGCCAATCTCGCATTTCTGGACATCACCACATTCGTTTTACAGCATGGCG
CAAATGGATCCAGATTTGTATAGTTCCCTGCAGCTATCCAAGCTGGTGGT
CTTCAAGGGAGAGCTCAACTATCGCAAGCTGCTGCAGGACGTCTGCTGGG
ACCCCACCCAGGAACTCAGCACCTGCCTCCGTGGCTTCCTTCCCAGCAAC
ATTTGTGTGCTGCGGCGGGTCAAGAGCGAAGTTATCTCCGGCCTGCCCGA
GGGCGTTGGCCAGGCGCTGAGTGTGAAGGATCCGCGCTGGATGGTCTCGG
GCAGTTATGGGGTCATTCAGTTCGTTGACGGAGCTCGTGAATTTGGCTAT
GCAAGCTTTCTAGACCAT

BO09030.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1437 CG2921-PA 1..1434 17..1450 7170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-RA 1597 CG2921-RA 104..1537 17..1450 7170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22073967..22074701 1143..409 3675 100 Minus
2R 25286936 2R 22073598..22073907 1450..1141 1550 100 Minus
2R 25286936 2R 22074929..22075205 293..17 1385 100 Minus
2R 25286936 2R 22074755..22074872 410..293 590 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:30:16 has no hits.

BO09030.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:22 Download gff for BO09030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 126..1576 10..1462 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:55 Download gff for BO09030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 104..1537 17..1452 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:32 Download gff for BO09030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 133..1566 17..1452 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:57 Download gff for BO09030.complete
Subject Subject Range Query Range Percent Splice Strand
CG2921-RA 104..1537 17..1452 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:57 Download gff for BO09030.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22073596..22073904 1144..1452 99 <- Minus
2R 22073967..22074699 411..1143 100 <- Minus
2R 22074755..22074871 294..410 100 <- Minus
2R 22074929..22075205 17..293 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:55 Download gff for BO09030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17961101..17961409 1144..1452 99 <- Minus
arm_2R 17961472..17962204 411..1143 100 <- Minus
arm_2R 17962260..17962376 294..410 100 <- Minus
arm_2R 17962434..17962710 17..293 100   Minus

BO09030.pep Sequence

Translation from 16 to 1468

> BO09030.pep
MESLSKDPSSEGELPEDEGKTDSEPSKISRLLRTEFDAKYQIVNLQTPLN
AFMSGHYKQSFAFFTLRSRLPVILTNVIDTLTRDKSELVAQFASNEFSQA
AREELKIIIGLISRLKYELQTDKSFQNFTGEEPDRDVWNNFISNLPDGER
SFYKASSLHAECYLHRKLHSFLENSVFLKSYDFFAKVKEQALTDSIDDIL
ALTKYTRRSENSVEVFDELLRINMWSNCNDVATDTDTVKQSNRQVLEKVA
NTDERVLVNQAAEIWRCLENPKLKKHKQVDFILDNAGYELFSDFILAEFM
IEKGLADKVRFHVKAHPWFVTDVTERDFKWTLEYLSEHADYIISLIGKKF
LQFIDEGKFELAPISHFWTSPHSFYSMAQMDPDLYSSLQLSKLVVFKGEL
NYRKLLQDVCWDPTQELSTCLRGFLPSNICVLRRVKSEVISGLPEGVGQA
LSVKDPRWMVSGSYGVIQFVDGAREFGYASFLDH

BO09030.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG2921-PA 478 CG2921-PA 1..478 1..478 2482 100 Plus
CG11474-PC 436 CG11474-PC 5..433 34..469 989 42 Plus
CG11474-PA 436 CG11474-PA 5..433 34..469 989 42 Plus
CG4161-PB 484 CG4161-PB 22..449 47..474 978 44.3 Plus
CG4161-PA 484 CG4161-PA 22..449 47..474 978 44.3 Plus