Clone Sequence Records
BO09030.3prime Sequence
934 bp (901 high quality bases) assembled on 2006-01-10
> BO09030.3prime
ATGGTCTAGAAAGCTTGCATAGCCAAATTCACGAGCTCCGTCAACGAACT
GAATGACCCCATAACTGCCCGAGACCATCCAGCGCGGATCCTTCACACTC
AGCGCCTGGCCAACGCCCTCGGGCAGGCCGGAGATAACTTCGCTCTTGAC
CCGCCGCAGCACACAAATGTTGCTGGGAAGGAAGCCACGGAGGCAGGTGC
TGAGTTCCTGGGTGGGGTCCCAGCAGACGTCCTGCAGCAGCTTGCGATAG
TTGAGCTCTCCCTTGAAGACCACCAGCTTGGATAGCTGCAGGGAACTATA
CAAATCTGGATCCATTTGCGCCATGCTGTAAAACGAATGTGGTGATGTCC
AGAAATGCGAGATTGGCGCCAGTTCGAACTTTCCCTCATCGATGAATTGT
AGGAACTTCTTTCCTATCAGACTTATAATGTAGTCCGCATGCTCACTCAA
GTACTCCAGCGTCCACTTGAAGTCCCGCTCCGTCACATCGGTGACAAACC
AAGGGTGGGCCTTCACATGGAACCGCACCTTGTCGGCCAGTCCCTTCTCA
ATCATGAACTCAGCCAGTATAAAGTCGCTAAAGAGTTCGTAGCCTGCATT
GTCCAGTATAAAGTCCACCTGCTTATGCTTCTTCAGTTTAGGGTTTTCCA
AGCACCTCCAAATCTCCGCTGCCTGGTTAACCAGTACGCGCTCATCGGTG
TTTGCCACTTTCTCCAGCACCTGGCGGTTCGATTGCTTTACTGTATCCGT
GTCGGTCGCCACATCATTGCAGTTGCTCCACATGTTGATCCTCAGAAGCT
CGTCGAACACCTCCACGCTGTTCTCTGATCGTCGTGTGTACTTGGTCAGG
GCCAGTATATCATCAATGCTATCCGTTAGCGCCTGCTCCTTGACTTTGGC
AAAGAAATCGTATGACTTCAGAAATACGCTGTTT
BO09030.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-PA | 1437 | CG2921-RA | 519..1434 | 934..19 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:46:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1597 | CG2921-RA | 622..1537 | 934..19 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22073967..22074575 | 326..934 | 3045 | 100 | Plus |
2R | 25286936 | 2R | 22073598..22073907 | 19..328 | 1550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:46:15 has no hits.
BO09030.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:47 Download gff for
BO09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 519..1437 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:26 Download gff for
BO09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 519..1437 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:30:10 Download gff for
BO09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 622..1547 | 7..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:01 Download gff for
BO09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 622..1547 | 7..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:01 Download gff for
BO09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22073588..22073904 | 7..325 | 98 | <- | Plus |
2R | 22073967..22074575 | 326..934 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:30:10 Download gff for
BO09030.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17961093..17961409 | 7..325 | 98 | <- | Plus |
arm_2R | 17961472..17962080 | 326..934 | 100 | | Plus |
BO09030.5prime Sequence
916 bp (818 high quality bases) assembled on 2006-01-10
> BO09030.5prime
GAAGTTATCAGTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACA
GCGTGGAGGTGTTCGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGC
AATGATGTGGCGACCGACACGGATACAGTAAAGCAATCGAACCGCCAGGT
GCTGGAGAAAGTGGCAAACACCGATGAGCGCGTACTGGTTAACCAGGCAG
CGGAGATTTGGAGGTGCTTGNAAAACCCTAAACTGAAGAAGCATAAGCAG
GTGGACTTTATACTGGACAATGCAGGCTACGAACTCTTTAGCGACTTTAT
ACTGGCTGAGTTCATG
BO09030.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-PA | 1437 | CG2921-RA | 1..900 | 17..916 | 4481 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1597 | CG2921-RA | 104..1003 | 17..916 | 4489 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22074194..22074701 | 916..409 | 2529 | 99.8 | Minus |
2R | 25286936 | 2R | 22074929..22075205 | 293..17 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 22074755..22074872 | 410..293 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:47:32 has no hits.
BO09030.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:59:49 Download gff for
BO09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:59:28 Download gff for
BO09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-PA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:32 Download gff for
BO09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 97..1003 | 10..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:04 Download gff for
BO09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 97..1003 | 10..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:04 Download gff for
BO09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22074194..22074699 | 411..916 | 99 | <- | Minus |
2R | 22074755..22074871 | 294..410 | 100 | <- | Minus |
2R | 22074929..22075212 | 10..293 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:32 Download gff for
BO09030.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17961699..17962204 | 411..916 | 99 | <- | Minus |
arm_2R | 17962260..17962376 | 294..410 | 100 | <- | Minus |
arm_2R | 17962434..17962717 | 10..293 | 98 | | Minus |
BO09030.complete Sequence
1468 bp assembled on 2008-08-14
GenBank Submission: FJ631357
> BO09030.complete
GAAGTTATCAGTCGACATGGAATCCTTATCGAAGGACCCTTCCTCGGAAG
GCGAACTGCCCGAGGACGAAGGCAAAACGGACTCGGAACCCAGCAAAATA
TCGCGACTGTTGCGAACGGAATTCGATGCCAAATACCAGATCGTAAACCT
GCAGACTCCTCTCAATGCCTTTATGTCGGGCCATTACAAGCAGAGCTTTG
CCTTCTTCACACTCCGGAGTCGGCTGCCCGTGATCCTGACCAACGTGATA
GATACGCTGACACGGGACAAATCCGAGCTGGTAGCCCAATTCGCCTCAAA
TGAATTTTCACAGGCTGCCCGCGAGGAGCTAAAGATCATTATTGGATTGA
TCTCCAGGCTAAAGTACGAGCTGCAAACGGACAAATCGTTTCAAAACTTT
ACTGGCGAAGAACCCGATCGAGATGTTTGGAACAACTTTATCAGCAACCT
GCCCGATGGCGAACGCAGCTTCTACAAAGCCAGCTCCCTCCATGCCGAGT
GCTATCTGCACCGCAAACTCCACTCCTTTCTGGAAAACAGCGTATTTCTG
AAGTCATACGATTTCTTTGCCAAAGTCAAGGAGCAGGCGCTAACGGATAG
CATTGATGATATACTGGCCCTGACCAAGTACACACGACGATCAGAGAACA
GCGTGGAGGTGTTCGACGAGCTTCTGAGGATCAACATGTGGAGCAACTGC
AATGATGTGGCGACCGACACGGATACAGTAAAGCAATCGAACCGCCAGGT
GCTGGAGAAAGTGGCAAACACCGATGAGCGCGTACTGGTTAACCAGGCAG
CGGAGATTTGGAGGTGCTTGGAAAACCCTAAACTGAAGAAGCATAAGCAG
GTGGACTTTATACTGGACAATGCAGGCTACGAACTCTTTAGCGACTTTAT
ACTGGCTGAGTTCATGATTGAGAAGGGACTGGCCGACAAGGTGCGGTTCC
ATGTGAAGGCCCACCCTTGGTTTGTCACCGATGTGACGGAGCGGGACTTC
AAGTGGACGCTGGAGTACTTGAGTGAGCATGCGGACTACATTATAAGTCT
GATAGGAAAGAAGTTCCTACAATTCATCGATGAGGGAAAGTTCGAACTGG
CGCCAATCTCGCATTTCTGGACATCACCACATTCGTTTTACAGCATGGCG
CAAATGGATCCAGATTTGTATAGTTCCCTGCAGCTATCCAAGCTGGTGGT
CTTCAAGGGAGAGCTCAACTATCGCAAGCTGCTGCAGGACGTCTGCTGGG
ACCCCACCCAGGAACTCAGCACCTGCCTCCGTGGCTTCCTTCCCAGCAAC
ATTTGTGTGCTGCGGCGGGTCAAGAGCGAAGTTATCTCCGGCCTGCCCGA
GGGCGTTGGCCAGGCGCTGAGTGTGAAGGATCCGCGCTGGATGGTCTCGG
GCAGTTATGGGGTCATTCAGTTCGTTGACGGAGCTCGTGAATTTGGCTAT
GCAAGCTTTCTAGACCAT
BO09030.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1437 | CG2921-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:30:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-RA | 1597 | CG2921-RA | 104..1537 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22073967..22074701 | 1143..409 | 3675 | 100 | Minus |
2R | 25286936 | 2R | 22073598..22073907 | 1450..1141 | 1550 | 100 | Minus |
2R | 25286936 | 2R | 22074929..22075205 | 293..17 | 1385 | 100 | Minus |
2R | 25286936 | 2R | 22074755..22074872 | 410..293 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:30:16 has no hits.
BO09030.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:39:22 Download gff for
BO09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 126..1576 | 10..1462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:55 Download gff for
BO09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 104..1537 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:32 Download gff for
BO09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 133..1566 | 17..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:57 Download gff for
BO09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2921-RA | 104..1537 | 17..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:57 Download gff for
BO09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22073596..22073904 | 1144..1452 | 99 | <- | Minus |
2R | 22073967..22074699 | 411..1143 | 100 | <- | Minus |
2R | 22074755..22074871 | 294..410 | 100 | <- | Minus |
2R | 22074929..22075205 | 17..293 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:55 Download gff for
BO09030.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17961101..17961409 | 1144..1452 | 99 | <- | Minus |
arm_2R | 17961472..17962204 | 411..1143 | 100 | <- | Minus |
arm_2R | 17962260..17962376 | 294..410 | 100 | <- | Minus |
arm_2R | 17962434..17962710 | 17..293 | 100 | | Minus |
BO09030.pep Sequence
Translation from 16 to 1468
> BO09030.pep
MESLSKDPSSEGELPEDEGKTDSEPSKISRLLRTEFDAKYQIVNLQTPLN
AFMSGHYKQSFAFFTLRSRLPVILTNVIDTLTRDKSELVAQFASNEFSQA
AREELKIIIGLISRLKYELQTDKSFQNFTGEEPDRDVWNNFISNLPDGER
SFYKASSLHAECYLHRKLHSFLENSVFLKSYDFFAKVKEQALTDSIDDIL
ALTKYTRRSENSVEVFDELLRINMWSNCNDVATDTDTVKQSNRQVLEKVA
NTDERVLVNQAAEIWRCLENPKLKKHKQVDFILDNAGYELFSDFILAEFM
IEKGLADKVRFHVKAHPWFVTDVTERDFKWTLEYLSEHADYIISLIGKKF
LQFIDEGKFELAPISHFWTSPHSFYSMAQMDPDLYSSLQLSKLVVFKGEL
NYRKLLQDVCWDPTQELSTCLRGFLPSNICVLRRVKSEVISGLPEGVGQA
LSVKDPRWMVSGSYGVIQFVDGAREFGYASFLDH
BO09030.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2921-PA | 478 | CG2921-PA | 1..478 | 1..478 | 2482 | 100 | Plus |
CG11474-PC | 436 | CG11474-PC | 5..433 | 34..469 | 989 | 42 | Plus |
CG11474-PA | 436 | CG11474-PA | 5..433 | 34..469 | 989 | 42 | Plus |
CG4161-PB | 484 | CG4161-PB | 22..449 | 47..474 | 978 | 44.3 | Plus |
CG4161-PA | 484 | CG4161-PA | 22..449 | 47..474 | 978 | 44.3 | Plus |